Wall clock time and date at job start Mon Mar 30 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47291 * 2 1 4 4 C 1.53000 * 109.47021 * 120.00250 * 2 1 3 5 5 H 1.08998 * 108.81498 * 294.58310 * 4 2 1 6 6 C 1.45877 * 108.84407 * 52.96405 * 4 2 1 7 7 C 1.54525 * 111.67222 * 182.32213 * 6 4 2 8 8 C 1.50544 * 108.85754 * 282.75018 * 7 6 4 9 9 C 1.53917 * 112.93702 * 91.75599 * 8 7 6 10 10 N 1.47982 * 113.35810 * 317.73229 * 9 8 7 11 11 C 1.46900 * 111.06190 * 192.20705 * 10 9 8 12 12 C 1.52999 * 109.47199 * 297.44155 * 11 10 9 13 13 C 1.53006 * 109.46868 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46868 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47147 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00167 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00163 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00025 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99840 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47243 * 89.99599 * 19 17 15 21 21 H 1.48499 * 109.47118 * 209.99910 * 19 17 15 22 22 H 1.48498 * 109.47146 * 329.99896 * 19 17 15 23 23 C 1.44307 * 113.63198 * 318.20145 * 10 9 8 24 24 H 1.09000 * 109.46733 * 300.00284 * 1 2 3 25 25 H 1.09007 * 109.46855 * 59.99592 * 1 2 3 26 26 H 1.08994 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47416 * 239.99977 * 2 1 3 28 28 H 1.09000 * 109.46649 * 186.62309 * 3 2 1 29 29 H 1.08998 * 109.46975 * 306.62132 * 3 2 1 30 30 H 1.08994 * 109.46827 * 66.62205 * 3 2 1 31 31 H 1.08994 * 109.03943 * 302.88164 * 6 4 2 32 32 H 1.08992 * 109.04090 * 61.83139 * 6 4 2 33 33 H 1.08996 * 109.57524 * 42.56377 * 7 6 4 34 34 H 1.08998 * 109.57249 * 162.81548 * 7 6 4 35 35 H 1.08999 * 108.78823 * 212.65022 * 8 7 6 36 36 H 1.09005 * 108.79045 * 330.86516 * 8 7 6 37 37 H 1.08999 * 108.70942 * 78.74738 * 9 8 7 38 38 H 1.08998 * 108.71347 * 196.88799 * 9 8 7 39 39 H 1.09002 * 109.47066 * 57.43964 * 11 10 9 40 40 H 1.09004 * 109.47113 * 177.43775 * 11 10 9 41 41 H 1.08998 * 109.47427 * 299.99782 * 12 11 10 42 42 H 1.08997 * 109.47237 * 60.00176 * 12 11 10 43 43 H 1.08993 * 109.46965 * 299.99883 * 13 12 11 44 44 H 1.08997 * 109.46737 * 60.00250 * 13 12 11 45 45 H 1.09010 * 109.47083 * 299.99931 * 14 13 12 46 46 H 1.09000 * 109.47081 * 59.99797 * 14 13 12 47 47 H 0.96999 * 119.99758 * 179.97438 * 18 17 15 48 48 H 1.09002 * 109.68911 * 335.61867 * 23 10 9 49 49 H 1.08998 * 109.69144 * 215.06815 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7525 -0.1461 2.1293 6 6 1.4130 -2.0364 1.3229 7 6 1.8398 -2.8016 2.5958 8 6 3.2271 -3.3495 2.3920 9 6 4.3281 -2.3927 2.8832 10 7 4.0780 -0.9783 2.5273 11 6 5.2741 -0.1568 2.7563 12 6 5.6294 -0.1769 4.2443 13 6 6.8756 0.6783 4.4826 14 6 7.2312 0.6577 5.9706 15 6 8.4583 1.5004 6.2054 16 1 8.9369 2.0003 5.3763 17 6 8.9700 1.6333 7.4788 18 7 10.0411 2.3684 7.6837 19 14 8.1427 0.7682 8.9128 20 1 8.7345 -0.5830 9.0839 21 1 8.3475 1.5590 10.1529 22 1 6.6882 0.6407 8.6416 23 6 3.5766 -0.7993 1.1861 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1236 1.4447 -0.1185 29 1 1.5832 1.9894 -0.8248 30 1 1.7767 1.9209 0.9433 31 1 0.3300 -1.9142 1.3279 32 1 1.7012 -2.6173 0.4468 33 1 1.8371 -2.1224 3.4483 34 1 1.1449 -3.6210 2.7795 35 1 3.3148 -4.2925 2.9316 36 1 3.3765 -3.5406 1.3292 37 1 4.4024 -2.4726 3.9677 38 1 5.2781 -2.6983 2.4449 39 1 6.1066 -0.5583 2.1785 40 1 5.0760 0.8685 2.4437 41 1 4.7969 0.2246 4.8221 42 1 5.8275 -1.2021 4.5568 43 1 7.7079 0.2764 3.9049 44 1 6.6778 1.7036 4.1700 45 1 6.3989 1.0594 6.5487 46 1 7.4290 -0.3677 6.2827 47 1 10.4009 2.4621 8.5796 48 1 3.8763 -1.6442 0.5661 49 1 3.9742 0.1244 0.7656 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703686218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:02 Heat of formation + Delta-G solvation = -53.466043 kcal Electronic energy + Delta-G solvation = -21201.071081 eV Core-core repulsion = 18353.715129 eV Total energy + Delta-G solvation = -2847.355952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71043 -37.81014 -36.25160 -35.09001 -33.95345 -31.58888 -30.82116 -28.48691 -27.34112 -25.96426 -25.20738 -22.96461 -21.96601 -21.70778 -20.54393 -20.42332 -18.85451 -17.17383 -16.67331 -16.37344 -16.26929 -15.80762 -15.32124 -15.02270 -14.81654 -14.65304 -14.41224 -14.09158 -14.02820 -13.68643 -13.39592 -13.24345 -12.95480 -12.88928 -12.65294 -12.55031 -12.37142 -12.22177 -12.00396 -11.80665 -11.72354 -11.67285 -11.60261 -11.34961 -11.28174 -11.27739 -11.12736 -10.89276 -10.84892 -10.76803 -9.05786 -8.30268 -6.34307 1.35057 1.37291 1.50064 2.36131 2.92570 3.05047 3.74412 3.90233 3.94971 4.04999 4.09705 4.15192 4.20616 4.29696 4.39164 4.48381 4.55394 4.59594 4.61398 4.73107 4.76507 4.78515 4.84320 4.85606 4.87095 4.95029 4.98796 5.05256 5.11390 5.14316 5.16950 5.20008 5.21183 5.26547 5.32970 5.37667 5.37897 5.47779 5.55116 5.57524 5.62634 5.65168 5.68123 5.71698 6.20981 6.28651 6.44239 6.73910 7.30530 8.86834 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.003414 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.406482 B = 8198.688013 C = 8726.582440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.070 4.070 5 H 0.061 0.939 6 C -0.111 4.111 7 C -0.111 4.111 8 C -0.114 4.114 9 C 0.059 3.941 10 N -0.552 5.552 11 C 0.069 3.931 12 C -0.103 4.103 13 C -0.094 4.094 14 C -0.011 4.011 15 C -0.535 4.535 16 H 0.030 0.970 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.247 1.247 23 C 0.066 3.934 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.266 0.734 48 H 0.040 0.960 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.992 -11.305 -16.304 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.089 4.089 5 H 0.079 0.921 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.068 4.068 10 N -0.277 5.277 11 C -0.058 4.058 12 C -0.141 4.141 13 C -0.133 4.133 14 C -0.048 4.048 15 C -0.573 4.573 16 H 0.048 0.952 17 C -0.195 4.195 18 N -0.594 5.594 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.171 1.171 23 C -0.063 4.063 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.229 -11.101 -15.899 29.498 hybrid contribution 1.209 -0.092 0.319 1.254 sum -21.020 -11.192 -15.580 28.457 Atomic orbital electron populations 1.21915 0.94644 1.02194 1.01671 1.21174 0.96215 0.95851 0.97752 1.21894 1.00776 0.96284 1.01593 1.20060 0.93838 0.97085 0.97900 0.92088 1.20711 1.00853 0.95729 0.97513 1.21274 0.95525 0.99641 0.98399 1.21360 0.94585 0.97883 1.01308 1.22459 0.96912 0.86796 1.00672 1.60651 1.31757 1.08806 1.26446 1.22090 0.90360 0.97464 0.95890 1.21515 0.96905 0.99686 0.96010 1.21295 0.96652 0.99009 0.96316 1.19525 0.94652 0.95522 0.95127 1.21569 1.11830 1.29886 0.94001 0.95204 1.26077 0.95344 0.95798 1.02321 1.70078 1.24408 1.41960 1.22991 0.85605 0.80416 0.78675 0.77645 1.19066 1.20811 1.17051 1.21944 0.95584 1.00586 0.88140 0.93132 0.92406 0.91635 0.91204 0.93045 0.92236 0.93356 0.90886 0.92264 0.92444 0.91287 0.90796 0.92152 0.91688 0.95699 0.95438 0.90824 0.91944 0.92326 0.93710 0.93428 0.96382 0.96568 0.92481 0.94154 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.57 71.98 0.62 -1.23 16 2 C -0.09 -1.33 2.48 -10.79 -0.03 -1.35 16 3 C -0.15 -2.33 8.82 71.98 0.64 -1.70 16 4 C -0.07 -1.20 1.46 -12.65 -0.02 -1.22 16 5 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 6 C -0.11 -1.66 4.17 28.93 0.12 -1.54 16 7 C -0.11 -1.82 5.63 30.32 0.17 -1.65 16 8 C -0.11 -1.95 5.28 30.11 0.16 -1.79 16 9 C 0.06 1.29 4.79 86.40 0.41 1.71 16 10 N -0.55 -13.01 4.02 -896.13 -3.61 -16.61 16 11 C 0.07 1.87 4.80 86.30 0.41 2.29 16 12 C -0.10 -3.29 5.06 30.60 0.15 -3.14 16 13 C -0.09 -3.80 5.15 30.60 0.16 -3.64 16 14 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 15 C -0.53 -32.06 9.66 25.60 0.25 -31.81 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 17 C 0.00 0.06 5.47 84.66 0.46 0.52 16 18 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 19 Si 0.95 45.51 27.47 68.60 1.88 47.39 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 23 C 0.07 1.30 4.72 87.12 0.41 1.72 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.06 0.73 6.24 -2.39 -0.01 0.72 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.85 6.42 -2.39 -0.02 0.83 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.07 0.97 5.90 -2.39 -0.01 0.96 16 32 H 0.06 0.83 7.58 -2.39 -0.02 0.81 16 33 H 0.06 1.16 7.78 -2.39 -0.02 1.14 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 0.98 6.66 -2.38 -0.02 0.97 16 37 H 0.06 1.55 6.97 -2.39 -0.02 1.53 16 38 H 0.02 0.57 7.95 -2.39 -0.02 0.55 16 39 H 0.03 0.75 8.05 -2.39 -0.02 0.73 16 40 H 0.07 1.96 7.79 -2.38 -0.02 1.94 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.83 6.72 -2.39 -0.02 1.81 16 43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 46 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 47 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 48 H 0.04 0.78 6.79 -2.39 -0.02 0.77 16 49 H 0.07 1.39 5.18 -2.39 -0.01 1.38 16 Total: -1.00 -65.44 356.87 3.42 -62.02 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.81 Total: 11.55 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 4.04 Total: -43.25 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -3.31 Total: -77.71 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -65.44 3.42 -62.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703686218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.554 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds