Wall clock time and date at job start Mon Mar 30 2020 07:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47024 * 2 1 4 4 C 1.52998 * 109.47126 * 119.99681 * 2 1 3 5 5 H 1.08999 * 109.63087 * 300.40224 * 4 2 1 6 6 C 1.54307 * 109.63586 * 180.02562 * 4 2 1 7 7 C 1.45872 * 112.19491 * 161.74945 * 6 4 2 8 8 C 1.54316 * 112.18080 * 61.11948 * 7 6 4 9 9 C 1.50449 * 108.66768 * 281.38074 * 8 7 6 10 10 N 1.48206 * 112.71373 * 93.49208 * 9 8 7 11 11 C 1.46897 * 111.00167 * 191.53081 * 10 9 8 12 12 C 1.53004 * 109.47428 * 298.91476 * 11 10 9 13 13 C 1.53000 * 109.47012 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47012 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47126 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00297 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99800 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47000 * 60.00204 * 19 17 15 21 21 H 1.48494 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47118 * 300.00532 * 19 17 15 23 23 C 1.47994 * 114.77139 * 318.40054 * 10 9 8 24 24 H 1.09001 * 109.47269 * 300.00378 * 1 2 3 25 25 H 1.08999 * 109.46967 * 60.00210 * 1 2 3 26 26 H 1.08999 * 109.47004 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47269 * 239.99622 * 2 1 3 28 28 H 1.09004 * 109.46933 * 59.99562 * 3 2 1 29 29 H 1.08997 * 109.46878 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46732 * 300.00100 * 3 2 1 31 31 H 1.09008 * 108.93307 * 41.05142 * 6 4 2 32 32 H 1.08994 * 108.93751 * 282.45342 * 6 4 2 33 33 H 1.09001 * 108.93971 * 300.42848 * 7 6 4 34 34 H 1.09003 * 108.87149 * 181.76761 * 7 6 4 35 35 H 1.09002 * 109.63095 * 41.18535 * 8 7 6 36 36 H 1.08995 * 109.63369 * 161.57812 * 8 7 6 37 37 H 1.08998 * 108.81234 * 214.68616 * 9 8 7 38 38 H 1.09003 * 108.80860 * 332.96144 * 9 8 7 39 39 H 1.09000 * 109.47137 * 58.91289 * 11 10 9 40 40 H 1.09005 * 109.47474 * 178.91255 * 11 10 9 41 41 H 1.09000 * 109.46809 * 300.00014 * 12 11 10 42 42 H 1.08999 * 109.46784 * 59.99836 * 12 11 10 43 43 H 1.09000 * 109.47625 * 299.99857 * 13 12 11 44 44 H 1.08999 * 109.47200 * 60.00433 * 13 12 11 45 45 H 1.09000 * 109.46809 * 300.00356 * 14 13 12 46 46 H 1.09005 * 109.46973 * 59.99815 * 14 13 12 47 47 H 0.97000 * 120.00180 * 179.97438 * 18 17 15 48 48 H 1.09007 * 108.81084 * 197.10968 * 23 10 9 49 49 H 1.09002 * 108.81490 * 78.83863 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6722 -0.2135 2.1409 6 6 3.5831 -0.7228 1.2534 7 6 4.1302 -0.9986 2.5772 8 6 3.7084 -2.3861 3.1045 9 6 2.2976 -2.2970 3.6196 10 7 1.2908 -2.6706 2.5981 11 6 -0.0642 -2.3141 3.0394 12 6 -0.3980 -3.0729 4.3254 13 6 -1.8091 -2.7010 4.7853 14 6 -2.1427 -3.4593 6.0716 15 6 -3.5327 -3.0935 6.5243 16 1 -4.1197 -2.3909 5.9515 17 6 -4.0555 -3.6568 7.6691 18 7 -3.3409 -4.5129 8.3662 19 14 -5.7783 -3.2029 8.2305 20 1 -6.7555 -3.5668 7.1732 21 1 -6.1021 -3.9389 9.4789 22 1 -5.8468 -1.7416 8.4861 23 6 1.5614 -2.1474 1.2404 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 3.9387 0.2521 0.9197 32 1 3.9378 -1.4838 0.5584 33 1 3.7794 -0.2348 3.2712 34 1 5.2182 -0.9558 2.5250 35 1 3.7577 -3.1156 2.2961 36 1 4.3746 -2.6890 3.9122 37 1 2.1953 -2.9578 4.4804 38 1 2.1045 -1.2733 3.9401 39 1 -0.1148 -1.2415 3.2269 40 1 -0.7813 -2.5815 2.2632 41 1 -0.3474 -4.1454 4.1379 42 1 0.3190 -2.8054 5.1015 43 1 -1.8593 -1.6284 4.9729 44 1 -2.5264 -2.9681 4.0093 45 1 -2.0923 -4.5319 5.8845 46 1 -1.4253 -3.1918 6.8475 47 1 -3.7085 -4.9088 9.1718 48 1 0.6459 -2.2073 0.6518 49 1 2.3213 -2.7704 0.7686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703686219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:05 Heat of formation + Delta-G solvation = -39.865730 kcal Electronic energy + Delta-G solvation = -21328.571333 eV Core-core repulsion = 18481.805135 eV Total energy + Delta-G solvation = -2846.766198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00376 -36.36649 -35.09088 -33.76099 -32.00912 -30.74953 -28.92349 -27.58052 -26.20154 -24.77539 -23.98952 -21.87529 -20.75996 -20.42472 -19.98363 -19.20634 -16.29516 -16.16214 -15.71906 -15.04460 -14.78325 -14.59311 -14.34601 -14.14019 -13.86521 -13.69592 -12.91708 -12.84807 -12.48689 -12.40304 -12.13871 -12.02072 -11.75075 -11.68532 -11.53370 -11.34676 -11.18742 -10.98487 -10.90719 -10.75250 -10.67289 -10.55308 -10.41941 -10.38148 -10.20775 -10.02172 -9.54851 -9.20152 -8.96083 -8.28989 -7.98189 -5.94202 -3.96324 3.36375 3.40433 3.43097 3.95752 4.40585 4.49357 4.50926 4.66110 4.76343 4.91619 5.05542 5.08769 5.29333 5.34265 5.40011 5.41100 5.42775 5.46422 5.48394 5.62027 5.64604 5.67520 5.71985 5.75690 5.82569 5.91583 5.92852 5.98373 5.99080 6.01317 6.09105 6.15230 6.21400 6.26255 6.27402 6.35123 6.37903 6.60704 6.89525 7.04466 7.17942 7.31528 7.37326 7.75078 7.92000 8.07320 8.50245 9.11087 9.67206 11.17142 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.003409 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.959390 B = 8212.582595 C = 8918.893617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.111 4.111 5 H 0.071 0.929 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.121 4.121 9 C 0.062 3.938 10 N -0.549 5.549 11 C 0.063 3.937 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.059 3.941 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.014 0.986 47 H 0.260 0.740 48 H 0.073 0.927 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.156 8.749 -17.101 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.131 4.131 5 H 0.089 0.911 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.159 4.159 9 C -0.065 4.065 10 N -0.273 5.273 11 C -0.065 4.065 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.071 0.929 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.068 4.068 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.032 0.968 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.184 8.152 -16.969 24.186 hybrid contribution -1.005 1.121 0.529 1.596 sum 14.179 9.274 -16.440 23.608 Atomic orbital electron populations 1.21947 0.95145 1.02105 1.01737 1.21079 0.95719 0.95949 0.97889 1.21917 1.00998 0.96115 1.01586 1.21574 0.95484 0.97678 0.98382 0.91059 1.20688 0.95086 1.01797 0.97695 1.20597 1.00253 0.97508 0.97437 1.21441 0.95965 0.97092 1.01353 1.21814 0.90778 0.99246 0.94706 1.61896 1.02502 1.61312 1.01638 1.22200 0.88605 0.97390 0.98281 1.21687 0.98343 1.00303 0.94950 1.21594 0.93480 0.99841 0.99789 1.19079 0.96055 0.95325 0.91045 1.21263 1.00413 1.25444 1.08730 0.92857 1.25031 0.97584 0.95190 0.96707 1.69957 1.37107 1.29726 1.16809 0.86678 0.84954 0.78512 0.77968 1.20256 1.21309 1.20304 1.22057 1.01467 0.92628 0.90655 0.92643 0.92811 0.92088 0.91302 0.92818 0.92412 0.92928 0.91905 0.92254 0.92372 0.92377 0.90856 0.91345 0.90613 0.95064 0.95527 0.91297 0.91783 0.92703 0.93826 0.93540 0.96643 0.96804 0.93016 0.90859 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.94 37.16 0.33 -1.04 16 2 C -0.09 -0.74 2.47 -90.62 -0.22 -0.97 16 3 C -0.15 -1.16 8.90 37.16 0.33 -0.83 16 4 C -0.11 -1.07 1.42 -91.21 -0.13 -1.20 16 5 H 0.07 0.82 6.78 -51.93 -0.35 0.47 16 6 C -0.12 -0.99 4.64 -29.42 -0.14 -1.13 16 7 C -0.12 -1.08 5.30 -29.42 -0.16 -1.24 16 8 C -0.12 -1.23 5.61 -27.32 -0.15 -1.38 16 9 C 0.06 0.77 4.34 -4.38 -0.02 0.75 16 10 N -0.55 -7.26 4.71 -235.72 -1.11 -8.37 16 11 C 0.06 0.93 4.86 -3.82 -0.02 0.91 16 12 C -0.11 -2.05 5.02 -26.73 -0.13 -2.18 16 13 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.06 0.65 4.59 -4.50 -0.02 0.63 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.57 6.05 -51.93 -0.31 0.26 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 6.08 -51.93 -0.32 0.10 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.50 5.67 -51.92 -0.29 0.20 16 32 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 33 H 0.06 0.56 7.53 -51.93 -0.39 0.17 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.77 7.08 -51.93 -0.37 0.40 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.03 6.93 -51.93 -0.36 0.67 16 38 H 0.03 0.41 6.46 -51.93 -0.34 0.07 16 39 H 0.03 0.40 7.82 -51.93 -0.41 -0.01 16 40 H 0.07 1.00 7.80 -51.93 -0.40 0.60 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.98 6.67 -51.93 -0.35 0.64 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.07 0.80 5.00 -51.93 -0.26 0.54 16 49 H 0.07 0.71 6.59 -51.93 -0.34 0.37 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -30.00 357.38 -10.52 -40.52 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -9.49 Total: -4.10 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.02 Total: -23.64 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.37 Total: -35.23 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.00 -10.52 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703686219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.654 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds