Wall clock time and date at job start Mon Mar 30 2020 07:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47024 * 2 1 4 4 C 1.52998 * 109.47126 * 119.99681 * 2 1 3 5 5 H 1.08999 * 109.63087 * 300.40224 * 4 2 1 6 6 C 1.54307 * 109.63586 * 180.02562 * 4 2 1 7 7 C 1.45872 * 112.19491 * 161.74945 * 6 4 2 8 8 C 1.54316 * 112.18080 * 61.11948 * 7 6 4 9 9 C 1.50449 * 108.66768 * 281.38074 * 8 7 6 10 10 N 1.48206 * 112.71373 * 93.49208 * 9 8 7 11 11 C 1.46897 * 111.00167 * 191.53081 * 10 9 8 12 12 C 1.53004 * 109.47428 * 298.91476 * 11 10 9 13 13 C 1.53000 * 109.47012 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47012 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47126 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00297 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99800 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47000 * 60.00204 * 19 17 15 21 21 H 1.48494 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47118 * 300.00532 * 19 17 15 23 23 C 1.47994 * 114.77139 * 318.40054 * 10 9 8 24 24 H 1.09001 * 109.47269 * 300.00378 * 1 2 3 25 25 H 1.08999 * 109.46967 * 60.00210 * 1 2 3 26 26 H 1.08999 * 109.47004 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47269 * 239.99622 * 2 1 3 28 28 H 1.09004 * 109.46933 * 59.99562 * 3 2 1 29 29 H 1.08997 * 109.46878 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46732 * 300.00100 * 3 2 1 31 31 H 1.09008 * 108.93307 * 41.05142 * 6 4 2 32 32 H 1.08994 * 108.93751 * 282.45342 * 6 4 2 33 33 H 1.09001 * 108.93971 * 300.42848 * 7 6 4 34 34 H 1.09003 * 108.87149 * 181.76761 * 7 6 4 35 35 H 1.09002 * 109.63095 * 41.18535 * 8 7 6 36 36 H 1.08995 * 109.63369 * 161.57812 * 8 7 6 37 37 H 1.08998 * 108.81234 * 214.68616 * 9 8 7 38 38 H 1.09003 * 108.80860 * 332.96144 * 9 8 7 39 39 H 1.09000 * 109.47137 * 58.91289 * 11 10 9 40 40 H 1.09005 * 109.47474 * 178.91255 * 11 10 9 41 41 H 1.09000 * 109.46809 * 300.00014 * 12 11 10 42 42 H 1.08999 * 109.46784 * 59.99836 * 12 11 10 43 43 H 1.09000 * 109.47625 * 299.99857 * 13 12 11 44 44 H 1.08999 * 109.47200 * 60.00433 * 13 12 11 45 45 H 1.09000 * 109.46809 * 300.00356 * 14 13 12 46 46 H 1.09005 * 109.46973 * 59.99815 * 14 13 12 47 47 H 0.97000 * 120.00180 * 179.97438 * 18 17 15 48 48 H 1.09007 * 108.81084 * 197.10968 * 23 10 9 49 49 H 1.09002 * 108.81490 * 78.83863 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6722 -0.2135 2.1409 6 6 3.5831 -0.7228 1.2534 7 6 4.1302 -0.9986 2.5772 8 6 3.7084 -2.3861 3.1045 9 6 2.2976 -2.2970 3.6196 10 7 1.2908 -2.6706 2.5981 11 6 -0.0642 -2.3141 3.0394 12 6 -0.3980 -3.0729 4.3254 13 6 -1.8091 -2.7010 4.7853 14 6 -2.1427 -3.4593 6.0716 15 6 -3.5327 -3.0935 6.5243 16 1 -4.1197 -2.3909 5.9515 17 6 -4.0555 -3.6568 7.6691 18 7 -3.3409 -4.5129 8.3662 19 14 -5.7783 -3.2029 8.2305 20 1 -6.7555 -3.5668 7.1732 21 1 -6.1021 -3.9389 9.4789 22 1 -5.8468 -1.7416 8.4861 23 6 1.5614 -2.1474 1.2404 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 3.9387 0.2521 0.9197 32 1 3.9378 -1.4838 0.5584 33 1 3.7794 -0.2348 3.2712 34 1 5.2182 -0.9558 2.5250 35 1 3.7577 -3.1156 2.2961 36 1 4.3746 -2.6890 3.9122 37 1 2.1953 -2.9578 4.4804 38 1 2.1045 -1.2733 3.9401 39 1 -0.1148 -1.2415 3.2269 40 1 -0.7813 -2.5815 2.2632 41 1 -0.3474 -4.1454 4.1379 42 1 0.3190 -2.8054 5.1015 43 1 -1.8593 -1.6284 4.9729 44 1 -2.5264 -2.9681 4.0093 45 1 -2.0923 -4.5319 5.8845 46 1 -1.4253 -3.1918 6.8475 47 1 -3.7085 -4.9088 9.1718 48 1 0.6459 -2.2073 0.6518 49 1 2.3213 -2.7704 0.7686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703686219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:04 Heat of formation + Delta-G solvation = -55.439571 kcal Electronic energy + Delta-G solvation = -21329.246666 eV Core-core repulsion = 18481.805135 eV Total energy + Delta-G solvation = -2847.441531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86871 -37.49371 -36.24018 -35.31978 -33.83907 -31.56002 -30.51163 -28.41309 -27.49327 -25.90647 -25.33166 -23.29352 -21.82386 -21.58712 -21.22649 -20.11537 -18.43187 -17.16501 -16.73581 -16.51553 -16.17646 -15.81562 -15.41440 -15.12489 -14.65537 -14.62452 -14.44791 -14.13397 -13.73045 -13.54400 -13.36700 -13.13332 -13.06391 -12.82589 -12.73974 -12.50395 -12.40906 -12.27131 -12.20709 -12.03207 -11.88942 -11.76255 -11.58676 -11.40333 -11.34150 -11.26154 -11.15562 -10.95604 -10.75951 -10.55482 -9.03473 -8.20034 -6.31931 1.38884 1.42651 1.50639 2.40652 2.92215 3.12355 3.66190 3.73861 3.89129 4.02931 4.07859 4.14172 4.21859 4.28623 4.36712 4.46581 4.55730 4.58743 4.63674 4.66442 4.73964 4.76541 4.80730 4.84733 4.88841 4.91694 4.98070 5.03372 5.09845 5.10886 5.18721 5.23163 5.24978 5.27462 5.29114 5.34590 5.36045 5.41405 5.45117 5.54201 5.56829 5.61235 5.76803 5.85942 6.19707 6.24908 6.33735 6.85220 7.37318 8.91768 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.003409 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.959390 B = 8212.582595 C = 8918.893617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.105 4.105 5 H 0.050 0.950 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.063 3.937 10 N -0.558 5.558 11 C 0.075 3.925 12 C -0.104 4.104 13 C -0.096 4.096 14 C 0.025 3.975 15 C -0.547 4.547 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.060 3.940 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.051 0.949 45 H -0.011 1.011 46 H -0.013 1.013 47 H 0.264 0.736 48 H 0.074 0.926 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 9.847 -18.646 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.125 4.125 5 H 0.069 0.931 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.064 4.064 10 N -0.283 5.283 11 C -0.053 4.053 12 C -0.142 4.142 13 C -0.134 4.134 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.066 4.066 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.007 0.993 46 H 0.006 0.994 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.326 9.260 -18.534 25.771 hybrid contribution -1.016 0.743 1.026 1.624 sum 14.310 10.003 -17.508 24.725 Atomic orbital electron populations 1.21947 0.95701 1.01715 1.01573 1.21061 0.95214 0.96423 0.97574 1.21898 1.01513 0.95471 1.01514 1.21488 0.96392 0.96541 0.98116 0.93110 1.20678 0.94029 1.02719 0.97604 1.20569 1.01234 0.96230 0.97401 1.21414 0.94343 0.98051 1.01584 1.21816 0.92160 0.98192 0.94257 1.61845 1.01718 1.61916 1.02791 1.21959 0.90004 0.96646 0.96649 1.21509 0.96058 1.00101 0.96503 1.21397 0.95683 0.99102 0.97211 1.18999 0.94945 0.94350 0.92932 1.21714 1.01508 1.25846 1.09375 0.92194 1.26034 1.02422 0.94856 0.96708 1.70101 1.39337 1.30743 1.17306 0.85477 0.79083 0.78664 0.77691 1.19035 1.20710 1.19120 1.22112 1.01894 0.93599 0.89032 0.93966 0.91814 0.92569 0.90230 0.93791 0.91558 0.92120 0.90780 0.91437 0.93241 0.90777 0.90805 0.90625 0.92439 0.95840 0.95608 0.90701 0.92724 0.93314 0.93466 0.92977 0.99270 0.99430 0.92742 0.90729 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.94 71.98 0.64 -1.91 16 2 C -0.08 -1.26 2.47 -10.79 -0.03 -1.29 16 3 C -0.15 -2.00 8.90 71.98 0.64 -1.36 16 4 C -0.11 -1.87 1.42 -11.18 -0.02 -1.88 16 5 H 0.05 1.13 6.78 -2.39 -0.02 1.12 16 6 C -0.11 -1.68 4.64 28.85 0.13 -1.55 16 7 C -0.12 -1.89 5.30 28.86 0.15 -1.73 16 8 C -0.12 -2.23 5.61 30.22 0.17 -2.06 16 9 C 0.06 1.57 4.34 85.23 0.37 1.94 16 10 N -0.56 -14.49 4.71 -899.67 -4.24 -18.73 16 11 C 0.08 2.22 4.86 86.31 0.42 2.64 16 12 C -0.10 -3.78 5.02 30.60 0.15 -3.63 16 13 C -0.10 -4.14 5.15 30.60 0.16 -3.99 16 14 C 0.02 1.38 4.97 29.85 0.15 1.53 16 15 C -0.55 -32.34 9.11 25.60 0.23 -32.11 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 18 N -0.93 -58.64 13.29 21.45 0.28 -58.35 16 19 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.06 1.23 4.59 85.27 0.39 1.63 16 24 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.98 6.05 -2.39 -0.01 0.97 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.79 6.08 -2.39 -0.01 0.77 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.96 5.67 -2.38 -0.01 0.95 16 32 H 0.07 0.93 7.52 -2.39 -0.02 0.91 16 33 H 0.05 0.89 7.53 -2.39 -0.02 0.88 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.42 7.08 -2.39 -0.02 1.40 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.62 6.93 -2.39 -0.02 1.60 16 38 H 0.02 0.62 6.46 -2.39 -0.02 0.60 16 39 H 0.03 0.77 7.82 -2.39 -0.02 0.75 16 40 H 0.07 2.12 7.80 -2.38 -0.02 2.10 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.82 6.67 -2.39 -0.02 1.80 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 45 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 47 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.07 1.51 5.00 -2.38 -0.01 1.50 16 49 H 0.08 1.44 6.59 -2.39 -0.02 1.43 16 Total: -1.00 -64.78 357.38 2.98 -61.80 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.87 Total: 11.46 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 4.03 Total: -43.46 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -3.95 Total: -77.09 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.78 2.98 -61.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703686219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.363 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds