Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99996 * 2 1 4 4 C 1.52999 * 109.47372 * 66.04287 * 3 2 1 5 5 C 1.53001 * 109.47390 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47022 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.46956 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00428 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00003 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99806 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99961 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47088 * 90.00420 * 11 9 7 13 13 H 1.48506 * 109.46945 * 209.99819 * 11 9 7 14 14 H 1.48492 * 109.47156 * 330.00237 * 11 9 7 15 15 C 1.46899 * 111.00032 * 236.04896 * 2 1 3 16 16 C 1.53006 * 109.46860 * 293.94889 * 15 2 1 17 17 H 1.08996 * 115.55031 * 330.72935 * 16 15 2 18 18 C 1.53000 * 117.49497 * 116.39041 * 16 15 2 19 19 C 1.53001 * 117.49866 * 185.01449 * 16 15 2 20 20 H 1.08996 * 117.49555 * 359.97438 * 19 16 15 21 21 C 1.52990 * 117.49958 * 145.02228 * 19 16 15 22 22 C 1.53011 * 109.47130 * 59.99935 * 21 19 16 23 23 C 1.52995 * 109.47440 * 180.02562 * 21 19 16 24 24 C 1.53004 * 109.47123 * 300.00449 * 21 19 16 25 25 H 1.08996 * 109.46832 * 183.95426 * 1 2 3 26 26 H 1.09000 * 109.47143 * 303.95570 * 1 2 3 27 27 H 1.09003 * 109.47097 * 63.95307 * 1 2 3 28 28 H 1.08993 * 109.47789 * 186.04966 * 3 2 1 29 29 H 1.09003 * 109.47289 * 306.04778 * 3 2 1 30 30 H 1.09004 * 109.47306 * 300.00289 * 4 3 2 31 31 H 1.09003 * 109.46952 * 59.99710 * 4 3 2 32 32 H 1.08996 * 109.47165 * 300.00075 * 5 4 3 33 33 H 1.08998 * 109.46915 * 60.00401 * 5 4 3 34 34 H 1.09004 * 109.47171 * 299.99860 * 6 5 4 35 35 H 1.09003 * 109.47456 * 59.99506 * 6 5 4 36 36 H 0.96998 * 119.99720 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.47075 * 173.95465 * 15 2 1 38 38 H 1.09001 * 109.47376 * 53.95184 * 15 2 1 39 39 H 1.08998 * 117.49694 * 214.97781 * 18 16 15 40 40 H 1.08998 * 117.50118 * 359.97438 * 18 16 15 41 41 H 1.09001 * 109.46858 * 59.99946 * 22 21 19 42 42 H 1.08997 * 109.46999 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.46809 * 300.00252 * 22 21 19 44 44 H 1.08993 * 109.47281 * 59.99579 * 23 21 19 45 45 H 1.09005 * 109.47527 * 180.02562 * 23 21 19 46 46 H 1.09003 * 109.47065 * 299.99748 * 23 21 19 47 47 H 1.08998 * 109.47461 * 59.99852 * 24 21 19 48 48 H 1.09005 * 109.46955 * 180.02562 * 24 21 19 49 49 H 1.09001 * 109.46902 * 299.99319 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4861 1.3179 6 6 1.8157 4.1719 2.6365 7 6 2.3546 5.5792 2.6359 8 1 2.9014 5.9478 1.7806 9 6 2.1489 6.3966 3.7271 10 7 1.4818 5.9483 4.7680 11 14 2.8176 8.1409 3.7267 12 1 1.8000 9.0610 3.1583 13 1 3.1326 8.5505 5.1189 14 1 4.0516 8.1977 2.9027 15 6 1.9955 -0.7659 -1.1376 16 6 1.6316 -2.2426 -0.9703 17 1 1.5318 -2.5886 0.0585 18 6 0.7063 -2.8651 -2.0178 19 6 2.1923 -3.2291 -1.9967 20 1 2.8201 -2.8260 -2.7913 21 6 2.5706 -4.6260 -1.5005 22 6 1.3343 -5.3112 -0.9146 23 6 3.1076 -5.4543 -2.6693 24 6 3.6485 -4.5092 -0.4210 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0797 1.3445 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 0.5472 2.0845 1.4265 31 1 2.0657 1.5016 2.1492 32 1 3.2634 3.4595 1.2095 33 1 1.7445 4.0417 0.4871 34 1 0.7314 4.1985 2.7453 35 1 2.2506 3.6161 3.4672 36 1 1.3367 6.5235 5.5354 37 1 3.0797 -0.6610 -1.1756 38 1 1.5612 -0.3872 -2.0628 39 1 -0.0018 -3.6210 -1.6782 40 1 0.3565 -2.2226 -2.8258 41 1 0.5663 -5.3944 -1.6837 42 1 1.6039 -6.3063 -0.5607 43 1 0.9521 -4.7209 -0.0818 44 1 3.9883 -4.9661 -3.0863 45 1 3.3767 -6.4498 -2.3159 46 1 2.3399 -5.5376 -3.4387 47 1 3.2664 -3.9190 0.4118 48 1 3.9183 -5.5046 -0.0678 49 1 4.5293 -4.0211 -0.8383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = -11.759792 kcal Electronic energy + Delta-G solvation = -20297.608710 eV Core-core repulsion = 17452.061277 eV Total energy + Delta-G solvation = -2845.547433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.67160 -37.52291 -34.77208 -33.77382 -32.06948 -28.79563 -27.89313 -27.53612 -27.27794 -25.49421 -23.30004 -22.97127 -20.80359 -20.43065 -19.89251 -18.60944 -16.34938 -16.15169 -15.41288 -15.33707 -14.85796 -14.42397 -14.34611 -14.15850 -13.97618 -13.46376 -12.97962 -12.63852 -12.49411 -12.31863 -12.28380 -12.09752 -11.91906 -11.63175 -11.54256 -11.51951 -11.48817 -11.19868 -11.01808 -10.93475 -10.78533 -10.46604 -10.44920 -10.30970 -10.04481 -9.81676 -9.56058 -9.21190 -8.96449 -8.29931 -8.22015 -5.94907 -3.96925 3.34523 3.40478 3.44163 3.55492 3.95480 4.38672 4.50038 4.54596 4.65878 4.82768 4.92126 4.97220 5.21582 5.27410 5.29553 5.37916 5.39642 5.40607 5.42304 5.50030 5.53814 5.56534 5.59563 5.65721 5.70289 5.73745 5.80182 5.84266 5.86577 5.95222 6.02506 6.04822 6.08268 6.12900 6.21492 6.23199 6.31817 6.58407 6.87134 7.02694 7.14356 7.19833 7.31560 7.74622 7.91048 8.06619 8.49508 9.10644 9.66652 11.16467 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043752 B = 0.002427 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.811051 B =11535.498162 C =11629.935921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.085 3.915 16 C -0.133 4.133 17 H 0.112 0.888 18 C -0.184 4.184 19 C -0.138 4.138 20 H 0.100 0.900 21 C -0.038 4.038 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.140 4.140 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -23.064 -14.735 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.043 4.043 16 C -0.152 4.152 17 H 0.130 0.870 18 C -0.221 4.221 19 C -0.157 4.157 20 H 0.118 0.882 21 C -0.038 4.038 22 C -0.202 4.202 23 C -0.195 4.195 24 C -0.197 4.197 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.199 -23.236 -14.130 27.196 hybrid contribution 0.008 1.454 -0.711 1.618 sum 0.207 -21.783 -14.840 26.358 Atomic orbital electron populations 1.22415 0.87613 1.01797 1.00613 1.61998 1.07944 1.14407 1.42018 1.22240 0.99665 0.86883 0.98346 1.21669 1.00819 0.96803 0.95820 1.21598 0.99336 0.93003 1.00793 1.19088 0.96673 0.94628 0.91195 1.21295 1.34760 0.97986 1.01705 0.92799 1.25041 0.95418 0.98467 0.95671 1.69971 1.41141 1.36356 1.06104 0.86611 0.79323 0.85003 0.77157 1.20727 1.21239 1.19916 1.21676 0.99835 0.91229 0.91570 1.22365 1.03403 0.93204 0.96209 0.86981 1.23327 0.93137 1.03697 1.01947 1.22430 0.96385 0.95276 1.01571 0.88179 1.20047 0.95585 0.92811 0.95388 1.22006 0.97312 1.00092 1.00775 1.21839 1.00748 0.99361 0.97587 1.21851 0.98165 1.01376 0.98329 0.91645 0.90854 0.96141 0.91150 0.95293 0.92570 0.91709 0.93504 0.93765 0.96774 0.96599 0.93075 0.90701 0.95148 0.88358 0.89425 0.92411 0.92826 0.92377 0.92697 0.92754 0.92729 0.92150 0.92952 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.18 60.07 0.55 0.85 16 2 N -0.54 -7.20 4.76 -242.91 -1.16 -8.36 16 3 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 4 C -0.11 -2.01 5.15 -26.73 -0.14 -2.15 16 5 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 6 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 11 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.08 0.95 5.24 -3.82 -0.02 0.93 16 16 C -0.13 -1.28 3.65 -90.62 -0.33 -1.61 16 17 H 0.11 1.20 7.07 -51.93 -0.37 0.83 16 18 C -0.18 -1.55 9.21 -26.73 -0.25 -1.79 16 19 C -0.14 -1.14 4.87 -90.62 -0.44 -1.58 16 20 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 21 C -0.04 -0.29 0.88 -154.51 -0.14 -0.42 16 22 C -0.14 -1.03 7.07 37.16 0.26 -0.77 16 23 C -0.14 -0.92 8.46 37.15 0.31 -0.60 16 24 C -0.14 -1.10 8.31 37.16 0.31 -0.79 16 25 H 0.06 0.73 7.28 -51.93 -0.38 0.35 16 26 H 0.07 0.97 6.30 -51.93 -0.33 0.65 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 29 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.84 7.93 -51.93 -0.41 0.42 16 38 H 0.03 0.34 7.85 -51.93 -0.41 -0.07 16 39 H 0.10 0.77 5.85 -51.93 -0.30 0.47 16 40 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 41 H 0.06 0.39 6.98 -51.93 -0.36 0.03 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.45 7.07 -51.93 -0.37 0.08 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.53 7.29 -51.93 -0.38 0.15 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -30.03 376.62 -10.27 -40.30 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -9.93 Total: -4.77 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -0.58 Total: -23.07 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.42 Total: -35.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.03 -10.27 -40.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.541 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds