Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99996 * 2 1 4 4 C 1.52999 * 109.47372 * 66.04287 * 3 2 1 5 5 C 1.53001 * 109.47390 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47022 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.46956 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00428 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00003 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99806 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99961 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47088 * 90.00420 * 11 9 7 13 13 H 1.48506 * 109.46945 * 209.99819 * 11 9 7 14 14 H 1.48492 * 109.47156 * 330.00237 * 11 9 7 15 15 C 1.46899 * 111.00032 * 236.04896 * 2 1 3 16 16 C 1.53006 * 109.46860 * 293.94889 * 15 2 1 17 17 H 1.08996 * 115.55031 * 330.72935 * 16 15 2 18 18 C 1.53000 * 117.49497 * 116.39041 * 16 15 2 19 19 C 1.53001 * 117.49866 * 185.01449 * 16 15 2 20 20 H 1.08996 * 117.49555 * 359.97438 * 19 16 15 21 21 C 1.52990 * 117.49958 * 145.02228 * 19 16 15 22 22 C 1.53011 * 109.47130 * 59.99935 * 21 19 16 23 23 C 1.52995 * 109.47440 * 180.02562 * 21 19 16 24 24 C 1.53004 * 109.47123 * 300.00449 * 21 19 16 25 25 H 1.08996 * 109.46832 * 183.95426 * 1 2 3 26 26 H 1.09000 * 109.47143 * 303.95570 * 1 2 3 27 27 H 1.09003 * 109.47097 * 63.95307 * 1 2 3 28 28 H 1.08993 * 109.47789 * 186.04966 * 3 2 1 29 29 H 1.09003 * 109.47289 * 306.04778 * 3 2 1 30 30 H 1.09004 * 109.47306 * 300.00289 * 4 3 2 31 31 H 1.09003 * 109.46952 * 59.99710 * 4 3 2 32 32 H 1.08996 * 109.47165 * 300.00075 * 5 4 3 33 33 H 1.08998 * 109.46915 * 60.00401 * 5 4 3 34 34 H 1.09004 * 109.47171 * 299.99860 * 6 5 4 35 35 H 1.09003 * 109.47456 * 59.99506 * 6 5 4 36 36 H 0.96998 * 119.99720 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.47075 * 173.95465 * 15 2 1 38 38 H 1.09001 * 109.47376 * 53.95184 * 15 2 1 39 39 H 1.08998 * 117.49694 * 214.97781 * 18 16 15 40 40 H 1.08998 * 117.50118 * 359.97438 * 18 16 15 41 41 H 1.09001 * 109.46858 * 59.99946 * 22 21 19 42 42 H 1.08997 * 109.46999 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.46809 * 300.00252 * 22 21 19 44 44 H 1.08993 * 109.47281 * 59.99579 * 23 21 19 45 45 H 1.09005 * 109.47527 * 180.02562 * 23 21 19 46 46 H 1.09003 * 109.47065 * 299.99748 * 23 21 19 47 47 H 1.08998 * 109.47461 * 59.99852 * 24 21 19 48 48 H 1.09005 * 109.46955 * 180.02562 * 24 21 19 49 49 H 1.09001 * 109.46902 * 299.99319 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4861 1.3179 6 6 1.8157 4.1719 2.6365 7 6 2.3546 5.5792 2.6359 8 1 2.9014 5.9478 1.7806 9 6 2.1489 6.3966 3.7271 10 7 1.4818 5.9483 4.7680 11 14 2.8176 8.1409 3.7267 12 1 1.8000 9.0610 3.1583 13 1 3.1326 8.5505 5.1189 14 1 4.0516 8.1977 2.9027 15 6 1.9955 -0.7659 -1.1376 16 6 1.6316 -2.2426 -0.9703 17 1 1.5318 -2.5886 0.0585 18 6 0.7063 -2.8651 -2.0178 19 6 2.1923 -3.2291 -1.9967 20 1 2.8201 -2.8260 -2.7913 21 6 2.5706 -4.6260 -1.5005 22 6 1.3343 -5.3112 -0.9146 23 6 3.1076 -5.4543 -2.6693 24 6 3.6485 -4.5092 -0.4210 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0797 1.3445 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 0.5472 2.0845 1.4265 31 1 2.0657 1.5016 2.1492 32 1 3.2634 3.4595 1.2095 33 1 1.7445 4.0417 0.4871 34 1 0.7314 4.1985 2.7453 35 1 2.2506 3.6161 3.4672 36 1 1.3367 6.5235 5.5354 37 1 3.0797 -0.6610 -1.1756 38 1 1.5612 -0.3872 -2.0628 39 1 -0.0018 -3.6210 -1.6782 40 1 0.3565 -2.2226 -2.8258 41 1 0.5663 -5.3944 -1.6837 42 1 1.6039 -6.3063 -0.5607 43 1 0.9521 -4.7209 -0.0818 44 1 3.9883 -4.9661 -3.0863 45 1 3.3767 -6.4498 -2.3159 46 1 2.3399 -5.5376 -3.4387 47 1 3.2664 -3.9190 0.4118 48 1 3.9183 -5.5046 -0.0678 49 1 4.5293 -4.0211 -0.8383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704132509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = -26.608905 kcal Electronic energy + Delta-G solvation = -20298.252616 eV Core-core repulsion = 17452.061277 eV Total energy + Delta-G solvation = -2846.191339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38990 -38.58356 -36.27610 -34.97495 -33.90069 -30.47924 -28.72572 -28.09015 -28.02329 -27.12269 -24.80030 -23.68906 -22.31588 -21.57967 -21.19696 -19.24037 -18.42486 -17.11391 -16.60519 -16.53423 -16.25354 -15.79027 -15.41587 -15.00226 -14.73509 -14.44633 -14.26972 -14.07578 -13.67398 -13.46797 -13.22337 -13.13499 -12.97863 -12.85906 -12.80246 -12.57855 -12.49563 -12.33540 -12.20079 -12.15366 -11.94788 -11.83434 -11.74399 -11.42040 -11.32644 -11.27285 -11.02753 -10.70941 -10.55462 -10.50336 -9.26671 -8.19815 -6.31375 1.39259 1.41198 1.52439 2.40811 2.79181 3.03524 3.12690 3.69277 3.93084 3.98042 4.03089 4.14372 4.20003 4.23907 4.32027 4.39096 4.51319 4.54933 4.57520 4.67014 4.68577 4.77128 4.82160 4.84468 4.86841 4.87892 4.92333 4.93827 4.96671 5.09825 5.10665 5.13731 5.21826 5.23353 5.27126 5.27898 5.36138 5.38850 5.43947 5.52555 5.55375 5.59421 5.77696 5.86848 6.12675 6.20118 6.26465 6.86104 7.37801 8.92141 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043752 B = 0.002427 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.811051 B =11535.498162 C =11629.935921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.066 3.934 4 C -0.103 4.103 5 C -0.096 4.096 6 C 0.023 3.977 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.004 4.004 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.263 1.263 15 C 0.088 3.912 16 C -0.141 4.141 17 H 0.101 0.899 18 C -0.176 4.176 19 C -0.130 4.130 20 H 0.102 0.898 21 C -0.039 4.039 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.049 0.951 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -23.376 -16.347 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.062 4.062 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.014 4.014 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.202 4.202 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.039 4.039 16 C -0.159 4.159 17 H 0.119 0.881 18 C -0.213 4.213 19 C -0.149 4.149 20 H 0.120 0.880 21 C -0.039 4.039 22 C -0.200 4.200 23 C -0.193 4.193 24 C -0.196 4.196 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.721 -23.564 -15.759 28.357 hybrid contribution -0.175 1.502 -0.179 1.523 sum 0.546 -22.062 -15.938 27.222 Atomic orbital electron populations 1.22397 0.87107 1.02458 1.00226 1.61952 1.08514 1.13494 1.43473 1.22031 1.00106 0.87718 0.96324 1.21489 1.00271 0.94858 0.97432 1.21400 0.99748 0.94606 0.97685 1.19016 0.94671 0.94426 0.93270 1.21740 1.35100 0.99196 1.02171 0.92176 1.26045 0.95533 1.03462 0.95128 1.70109 1.42241 1.38283 1.06862 0.85417 0.79030 0.78903 0.77510 1.19690 1.20666 1.18675 1.21681 0.99708 0.91776 0.90772 1.22190 1.05174 0.92500 0.96086 0.88142 1.23358 0.93284 1.03469 1.01174 1.22476 0.96435 0.95231 1.00733 0.87998 1.20071 0.95633 0.92564 0.95614 1.21987 0.97233 1.00179 1.00613 1.21815 1.00823 0.99466 0.97202 1.21837 0.98182 1.01528 0.98066 0.90333 0.92201 0.95643 0.90559 0.94865 0.92936 0.92782 0.93011 0.93215 0.99325 0.99277 0.92773 0.90781 0.94751 0.87696 0.89170 0.91896 0.92281 0.93191 0.92627 0.92161 0.92409 0.93396 0.92256 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.18 127.69 1.17 1.80 16 2 N -0.55 -14.18 4.76 -922.44 -4.39 -18.58 16 3 C 0.07 1.89 4.96 86.30 0.43 2.32 16 4 C -0.10 -3.66 5.15 30.59 0.16 -3.50 16 5 C -0.10 -4.09 5.15 30.60 0.16 -3.94 16 6 C 0.02 1.28 4.97 29.85 0.15 1.43 16 7 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 10 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 11 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 C 0.09 1.86 5.24 86.31 0.45 2.31 16 16 C -0.14 -2.54 3.65 -10.79 -0.04 -2.58 16 17 H 0.10 2.09 7.07 -2.39 -0.02 2.07 16 18 C -0.18 -2.64 9.21 30.60 0.28 -2.35 16 19 C -0.13 -1.95 4.87 -10.79 -0.05 -2.00 16 20 H 0.10 1.51 8.11 -2.39 -0.02 1.50 16 21 C -0.04 -0.52 0.88 -52.18 -0.05 -0.57 16 22 C -0.14 -1.82 7.07 71.99 0.51 -1.31 16 23 C -0.14 -1.55 8.46 71.98 0.61 -0.94 16 24 C -0.14 -2.05 8.31 71.98 0.60 -1.45 16 25 H 0.08 1.65 7.28 -2.39 -0.02 1.64 16 26 H 0.06 1.58 6.30 -2.39 -0.02 1.57 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 2.10 7.93 -2.39 -0.02 2.09 16 29 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 30 H 0.05 1.90 6.47 -2.38 -0.02 1.88 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.07 1.56 7.93 -2.39 -0.02 1.54 16 38 H 0.03 0.70 7.85 -2.39 -0.02 0.68 16 39 H 0.10 1.44 5.85 -2.39 -0.01 1.43 16 40 H 0.09 1.33 8.03 -2.39 -0.02 1.31 16 41 H 0.06 0.73 6.98 -2.39 -0.02 0.72 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.05 0.72 7.07 -2.39 -0.02 0.70 16 44 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.05 0.82 7.29 -2.39 -0.02 0.80 16 48 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -64.13 376.62 3.84 -60.29 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.85 Total: 11.59 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 5.07 Total: -42.34 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -4.11 Total: -76.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.13 3.84 -60.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.683 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds