Wall clock time and date at job start Mon Mar 30 2020 06:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99865 * 2 1 4 4 C 1.52992 * 109.47859 * 293.95839 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99776 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00001 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00114 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99955 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46999 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46979 * 120.00420 * 11 9 7 14 14 H 1.48498 * 109.46942 * 240.00334 * 11 9 7 15 15 C 1.46893 * 110.99979 * 123.95933 * 2 1 3 16 16 C 1.53003 * 109.47070 * 66.04550 * 15 2 1 17 17 H 1.09004 * 115.55051 * 29.41700 * 16 15 2 18 18 C 1.52993 * 117.49993 * 243.74436 * 16 15 2 19 19 C 1.52998 * 117.49538 * 175.08441 * 16 15 2 20 20 H 1.09000 * 117.50479 * 359.97438 * 19 16 15 21 21 C 1.53003 * 117.49624 * 214.97739 * 19 16 15 22 22 C 1.53002 * 109.47388 * 60.00505 * 21 19 16 23 23 C 1.53005 * 109.47045 * 180.02562 * 21 19 16 24 24 C 1.52995 * 109.47331 * 300.00445 * 21 19 16 25 25 H 1.09007 * 109.47285 * 59.99255 * 1 2 3 26 26 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46896 * 299.99735 * 1 2 3 28 28 H 1.09002 * 109.46980 * 173.95497 * 3 2 1 29 29 H 1.09001 * 109.46628 * 53.95919 * 3 2 1 30 30 H 1.09002 * 109.47103 * 59.99734 * 4 3 2 31 31 H 1.08998 * 109.46862 * 300.00546 * 4 3 2 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 34 34 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 35 35 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 36 36 H 0.97000 * 120.00354 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47081 * 186.04503 * 15 2 1 38 38 H 1.08993 * 109.47389 * 306.04375 * 15 2 1 39 39 H 1.09009 * 117.49890 * 0.02562 * 18 16 15 40 40 H 1.08996 * 117.50048 * 145.01909 * 18 16 15 41 41 H 1.08999 * 109.46851 * 59.99043 * 22 21 19 42 42 H 1.08997 * 109.47434 * 179.97438 * 22 21 19 43 43 H 1.09009 * 109.46901 * 300.00113 * 22 21 19 44 44 H 1.08995 * 109.47254 * 60.00267 * 23 21 19 45 45 H 1.09008 * 109.46925 * 180.02562 * 23 21 19 46 46 H 1.09002 * 109.46512 * 299.99774 * 23 21 19 47 47 H 1.09000 * 109.47278 * 59.99904 * 24 21 19 48 48 H 1.09003 * 109.47293 * 180.02562 * 24 21 19 49 49 H 1.09012 * 109.47202 * 299.99777 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0576 -1.3181 5 6 2.1792 3.4862 -1.3177 6 6 1.8146 4.1725 -2.6357 7 6 2.3536 5.5798 -2.6350 8 1 2.9018 5.9477 -1.7803 9 6 2.1478 6.3974 -3.7260 10 7 1.4808 5.9492 -4.7671 11 14 2.8153 8.1421 -3.7249 12 1 3.5229 8.4005 -2.4451 13 1 3.7623 8.3104 -4.8564 14 1 1.6919 9.1019 -3.8726 15 6 1.9954 -0.7661 1.1375 16 6 1.6314 -2.2427 0.9701 17 1 1.5340 -2.5892 -0.0588 18 6 0.7037 -2.8645 2.0157 19 6 2.1903 -3.2289 1.9977 20 1 2.8176 -2.8258 2.7927 21 6 2.5690 -4.6261 1.5025 22 6 3.6489 -4.5101 0.4249 23 6 3.1028 -5.4546 2.6729 24 6 1.3337 -5.3112 0.9149 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3444 0.1082 29 1 1.5611 1.9273 0.8310 30 1 0.5472 2.0847 -1.4263 31 1 2.0657 1.5017 -2.1490 32 1 3.2635 3.4596 -1.2093 33 1 1.7445 4.0417 -0.4868 34 1 2.2490 3.6171 -3.4669 35 1 0.7304 4.1991 -2.7437 36 1 1.3363 6.5242 -5.5348 37 1 3.0797 -0.6612 1.1755 38 1 1.5612 -0.3874 2.0627 39 1 0.3522 -2.2215 2.8227 40 1 -0.0039 -3.6203 1.6748 41 1 4.5289 -4.0219 0.8435 42 1 3.9190 -5.5055 0.0724 43 1 3.2682 -3.9199 -0.4089 44 1 2.3333 -5.5374 3.4403 45 1 3.3731 -6.4500 2.3200 46 1 3.9829 -4.9666 3.0918 47 1 0.9530 -4.7211 0.0812 48 1 1.6034 -6.3068 0.5625 49 1 0.5643 -5.3940 1.6827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:49 Heat of formation + Delta-G solvation = -11.988339 kcal Electronic energy + Delta-G solvation = -20297.573485 eV Core-core repulsion = 17452.016141 eV Total energy + Delta-G solvation = -2845.557344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.67174 -37.52066 -34.77274 -33.77321 -32.07011 -28.79488 -27.89418 -27.53659 -27.27796 -25.49423 -23.30156 -22.97140 -20.80632 -20.42941 -19.89130 -18.61121 -16.34931 -16.15478 -15.41146 -15.34107 -14.85040 -14.42157 -14.34563 -14.15567 -13.97533 -13.46291 -12.98715 -12.63976 -12.49625 -12.31838 -12.28919 -12.09282 -11.91946 -11.63524 -11.54018 -11.51770 -11.49121 -11.19995 -11.01617 -10.95005 -10.78475 -10.46361 -10.43383 -10.31404 -10.04363 -9.82018 -9.56401 -9.21272 -8.95367 -8.30361 -8.21977 -5.95083 -3.97058 3.33533 3.40696 3.45112 3.55243 3.95485 4.38578 4.50004 4.54441 4.65772 4.82429 4.92051 4.97145 5.21314 5.27269 5.29945 5.37885 5.39451 5.40527 5.42247 5.50004 5.53870 5.56557 5.59468 5.65647 5.70378 5.74013 5.80086 5.83769 5.86494 5.95497 6.02396 6.05062 6.08206 6.12825 6.21200 6.23166 6.31909 6.58475 6.87163 7.02826 7.14271 7.19808 7.31555 7.74860 7.91027 8.06517 8.49452 9.10756 9.66627 11.16323 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043792 B = 0.002426 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.231567 B =11537.127115 C =11631.306740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.054 3.946 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.085 3.915 16 C -0.133 4.133 17 H 0.112 0.888 18 C -0.184 4.184 19 C -0.138 4.138 20 H 0.100 0.900 21 C -0.038 4.038 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.259 0.741 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 -23.090 14.760 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.043 4.043 16 C -0.152 4.152 17 H 0.130 0.870 18 C -0.221 4.221 19 C -0.157 4.157 20 H 0.118 0.882 21 C -0.038 4.038 22 C -0.197 4.197 23 C -0.195 4.195 24 C -0.202 4.202 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.198 -23.261 14.163 27.234 hybrid contribution 0.013 1.451 0.691 1.608 sum 0.211 -21.810 14.854 26.388 Atomic orbital electron populations 1.22411 0.87614 1.01574 1.00829 1.61996 1.07943 1.14421 1.42016 1.22246 0.99661 0.86857 0.98355 1.21659 1.00828 0.96795 0.95813 1.21598 0.99329 0.93005 1.00796 1.19093 0.96683 0.94644 0.91204 1.21334 1.34599 0.97984 1.01745 0.92743 1.25041 0.95415 0.98479 0.95685 1.69979 1.41182 1.36332 1.06084 0.86559 0.78718 0.84912 0.77946 1.19785 1.21032 1.21061 1.21669 0.99838 0.91213 0.91598 1.22366 1.03385 0.93215 0.96219 0.86979 1.23339 0.93107 1.03700 1.01971 1.22442 0.96385 0.95269 1.01565 0.88171 1.20048 0.95588 0.92810 0.95387 1.21850 0.98150 1.01377 0.98342 1.21841 1.00755 0.99363 0.97577 1.22006 0.97321 1.00088 1.00775 0.90898 0.91629 0.96110 0.91157 0.95286 0.92586 0.91716 0.93505 0.93767 0.96601 0.96757 0.93129 0.90699 0.95154 0.89417 0.88352 0.92649 0.92948 0.92149 0.92719 0.92754 0.92705 0.92373 0.92827 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.15 60.07 0.55 0.85 16 2 N -0.54 -7.20 4.76 -242.92 -1.16 -8.36 16 3 C 0.06 0.83 4.96 -3.83 -0.02 0.82 16 4 C -0.11 -2.01 5.14 -26.74 -0.14 -2.15 16 5 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 11 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.08 0.95 5.24 -3.83 -0.02 0.93 16 16 C -0.13 -1.28 3.59 -90.62 -0.33 -1.60 16 17 H 0.11 1.20 7.07 -51.93 -0.37 0.83 16 18 C -0.18 -1.54 9.22 -26.70 -0.25 -1.79 16 19 C -0.14 -1.14 4.87 -90.58 -0.44 -1.58 16 20 H 0.10 0.84 8.11 -51.93 -0.42 0.41 16 21 C -0.04 -0.29 0.88 -154.51 -0.14 -0.42 16 22 C -0.14 -1.10 8.32 37.16 0.31 -0.79 16 23 C -0.14 -0.92 8.46 37.16 0.31 -0.60 16 24 C -0.14 -1.03 7.07 37.16 0.26 -0.77 16 25 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 26 H 0.06 0.72 7.16 -51.93 -0.37 0.35 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 29 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 0.84 7.93 -51.93 -0.41 0.42 16 38 H 0.03 0.34 7.85 -51.93 -0.41 -0.07 16 39 H 0.09 0.74 8.03 -51.92 -0.42 0.32 16 40 H 0.10 0.77 5.85 -51.93 -0.30 0.46 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.53 7.29 -51.92 -0.38 0.15 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.45 7.07 -51.93 -0.37 0.08 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.39 6.98 -51.92 -0.36 0.03 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -30.06 376.67 -10.27 -40.34 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -9.93 Total: -4.83 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -0.58 Total: -23.05 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.42 Total: -35.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.06 -10.27 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.349 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds