Wall clock time and date at job start Mon Mar 30 2020 06:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99865 * 2 1 4 4 C 1.52992 * 109.47859 * 293.95839 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99776 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00001 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00114 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99955 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46999 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46979 * 120.00420 * 11 9 7 14 14 H 1.48498 * 109.46942 * 240.00334 * 11 9 7 15 15 C 1.46893 * 110.99979 * 123.95933 * 2 1 3 16 16 C 1.53003 * 109.47070 * 66.04550 * 15 2 1 17 17 H 1.09004 * 115.55051 * 29.41700 * 16 15 2 18 18 C 1.52993 * 117.49993 * 243.74436 * 16 15 2 19 19 C 1.52998 * 117.49538 * 175.08441 * 16 15 2 20 20 H 1.09000 * 117.50479 * 359.97438 * 19 16 15 21 21 C 1.53003 * 117.49624 * 214.97739 * 19 16 15 22 22 C 1.53002 * 109.47388 * 60.00505 * 21 19 16 23 23 C 1.53005 * 109.47045 * 180.02562 * 21 19 16 24 24 C 1.52995 * 109.47331 * 300.00445 * 21 19 16 25 25 H 1.09007 * 109.47285 * 59.99255 * 1 2 3 26 26 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46896 * 299.99735 * 1 2 3 28 28 H 1.09002 * 109.46980 * 173.95497 * 3 2 1 29 29 H 1.09001 * 109.46628 * 53.95919 * 3 2 1 30 30 H 1.09002 * 109.47103 * 59.99734 * 4 3 2 31 31 H 1.08998 * 109.46862 * 300.00546 * 4 3 2 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 34 34 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 35 35 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 36 36 H 0.97000 * 120.00354 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47081 * 186.04503 * 15 2 1 38 38 H 1.08993 * 109.47389 * 306.04375 * 15 2 1 39 39 H 1.09009 * 117.49890 * 0.02562 * 18 16 15 40 40 H 1.08996 * 117.50048 * 145.01909 * 18 16 15 41 41 H 1.08999 * 109.46851 * 59.99043 * 22 21 19 42 42 H 1.08997 * 109.47434 * 179.97438 * 22 21 19 43 43 H 1.09009 * 109.46901 * 300.00113 * 22 21 19 44 44 H 1.08995 * 109.47254 * 60.00267 * 23 21 19 45 45 H 1.09008 * 109.46925 * 180.02562 * 23 21 19 46 46 H 1.09002 * 109.46512 * 299.99774 * 23 21 19 47 47 H 1.09000 * 109.47278 * 59.99904 * 24 21 19 48 48 H 1.09003 * 109.47293 * 180.02562 * 24 21 19 49 49 H 1.09012 * 109.47202 * 299.99777 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0576 -1.3181 5 6 2.1792 3.4862 -1.3177 6 6 1.8146 4.1725 -2.6357 7 6 2.3536 5.5798 -2.6350 8 1 2.9018 5.9477 -1.7803 9 6 2.1478 6.3974 -3.7260 10 7 1.4808 5.9492 -4.7671 11 14 2.8153 8.1421 -3.7249 12 1 3.5229 8.4005 -2.4451 13 1 3.7623 8.3104 -4.8564 14 1 1.6919 9.1019 -3.8726 15 6 1.9954 -0.7661 1.1375 16 6 1.6314 -2.2427 0.9701 17 1 1.5340 -2.5892 -0.0588 18 6 0.7037 -2.8645 2.0157 19 6 2.1903 -3.2289 1.9977 20 1 2.8176 -2.8258 2.7927 21 6 2.5690 -4.6261 1.5025 22 6 3.6489 -4.5101 0.4249 23 6 3.1028 -5.4546 2.6729 24 6 1.3337 -5.3112 0.9149 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3444 0.1082 29 1 1.5611 1.9273 0.8310 30 1 0.5472 2.0847 -1.4263 31 1 2.0657 1.5017 -2.1490 32 1 3.2635 3.4596 -1.2093 33 1 1.7445 4.0417 -0.4868 34 1 2.2490 3.6171 -3.4669 35 1 0.7304 4.1991 -2.7437 36 1 1.3363 6.5242 -5.5348 37 1 3.0797 -0.6612 1.1755 38 1 1.5612 -0.3874 2.0627 39 1 0.3522 -2.2215 2.8227 40 1 -0.0039 -3.6203 1.6748 41 1 4.5289 -4.0219 0.8435 42 1 3.9190 -5.5055 0.0724 43 1 3.2682 -3.9199 -0.4089 44 1 2.3333 -5.5374 3.4403 45 1 3.3731 -6.4500 2.3200 46 1 3.9829 -4.9666 3.0918 47 1 0.9530 -4.7211 0.0812 48 1 1.6034 -6.3068 0.5625 49 1 0.5643 -5.3940 1.6827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704132510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:49 Heat of formation + Delta-G solvation = -26.868484 kcal Electronic energy + Delta-G solvation = -20298.218737 eV Core-core repulsion = 17452.016141 eV Total energy + Delta-G solvation = -2846.202595 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38936 -38.58064 -36.27815 -34.97433 -33.90110 -30.47946 -28.72611 -28.08889 -28.02301 -27.12398 -24.79973 -23.69043 -22.31687 -21.58370 -21.19202 -19.24122 -18.42957 -17.11205 -16.60385 -16.53638 -16.25066 -15.78393 -15.41463 -15.00247 -14.73650 -14.45266 -14.27220 -14.07438 -13.67176 -13.46885 -13.22334 -13.13554 -12.98522 -12.86994 -12.81182 -12.57399 -12.49465 -12.31483 -12.20269 -12.15673 -11.94713 -11.83532 -11.74232 -11.42001 -11.33041 -11.26974 -11.02274 -10.70710 -10.56208 -10.50539 -9.26710 -8.20038 -6.31542 1.39262 1.39907 1.53452 2.40673 2.79062 3.03533 3.12537 3.69238 3.92935 3.98056 4.03267 4.14131 4.19972 4.24316 4.31990 4.38831 4.51414 4.55279 4.57614 4.66662 4.68348 4.77149 4.82222 4.84754 4.86764 4.87935 4.92381 4.93863 4.96662 5.09780 5.10661 5.13747 5.21857 5.23204 5.27126 5.27861 5.36169 5.38780 5.43945 5.52585 5.55460 5.59411 5.77630 5.86824 6.12676 6.20025 6.26369 6.86135 7.37723 8.92125 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043792 B = 0.002426 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.231567 B =11537.127115 C =11631.306740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.066 3.934 4 C -0.102 4.102 5 C -0.096 4.096 6 C 0.023 3.977 7 C -0.543 4.543 8 H 0.060 0.940 9 C -0.005 4.005 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.088 3.912 16 C -0.141 4.141 17 H 0.101 0.899 18 C -0.176 4.176 19 C -0.130 4.130 20 H 0.102 0.898 21 C -0.039 4.039 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.143 4.143 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.024 0.976 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.049 0.951 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.058 0.942 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -23.408 16.360 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.062 4.062 4 C -0.140 4.140 5 C -0.134 4.134 6 C -0.014 4.014 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.202 4.202 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.039 4.039 16 C -0.160 4.160 17 H 0.119 0.881 18 C -0.213 4.213 19 C -0.149 4.149 20 H 0.120 0.880 21 C -0.039 4.039 22 C -0.196 4.196 23 C -0.193 4.193 24 C -0.200 4.200 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.721 -23.595 15.778 28.393 hybrid contribution -0.170 1.502 0.163 1.521 sum 0.551 -22.092 15.941 27.249 Atomic orbital electron populations 1.22394 0.87111 1.02348 1.00332 1.61948 1.08511 1.13503 1.43476 1.22038 1.00109 0.87696 0.96328 1.21478 1.00261 0.94855 0.97432 1.21400 0.99751 0.94603 0.97688 1.19020 0.94684 0.94437 0.93273 1.21767 1.34939 0.99195 1.02190 0.92185 1.26042 0.95533 1.03468 0.95146 1.70113 1.42267 1.38283 1.06857 0.85366 0.78197 0.78778 0.78498 1.18527 1.20284 1.20292 1.21674 0.99711 0.91762 0.90798 1.22191 1.05161 0.92506 0.96096 0.88140 1.23370 0.93250 1.03473 1.01197 1.22488 0.96439 0.95222 1.00727 0.87989 1.20073 0.95634 0.92565 0.95614 1.21836 0.98171 1.01528 0.98077 1.21818 1.00832 0.99467 0.97190 1.21988 0.97244 1.00174 1.00612 0.92231 0.90244 0.95705 0.90557 0.94864 0.92976 0.92780 0.92995 0.93235 0.99273 0.99305 0.92772 0.90779 0.94753 0.89156 0.87685 0.92855 0.92256 0.93394 0.92397 0.92164 0.92636 0.93185 0.92285 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.15 127.69 1.17 1.80 16 2 N -0.55 -14.19 4.76 -922.47 -4.39 -18.58 16 3 C 0.07 1.90 4.96 86.30 0.43 2.32 16 4 C -0.10 -3.65 5.14 30.59 0.16 -3.49 16 5 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 6 C 0.02 1.26 4.97 29.85 0.15 1.41 16 7 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 10 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 11 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.09 1.85 5.24 86.31 0.45 2.30 16 16 C -0.14 -2.54 3.59 -10.80 -0.04 -2.58 16 17 H 0.10 2.09 7.07 -2.39 -0.02 2.07 16 18 C -0.18 -2.63 9.22 30.62 0.28 -2.35 16 19 C -0.13 -1.94 4.87 -10.77 -0.05 -2.00 16 20 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 21 C -0.04 -0.52 0.88 -52.18 -0.05 -0.57 16 22 C -0.14 -2.05 8.32 71.98 0.60 -1.45 16 23 C -0.14 -1.55 8.46 71.98 0.61 -0.94 16 24 C -0.14 -1.82 7.07 71.98 0.51 -1.31 16 25 H 0.06 1.57 6.47 -2.38 -0.02 1.56 16 26 H 0.08 1.66 7.16 -2.39 -0.02 1.64 16 27 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 2.10 7.93 -2.39 -0.02 2.09 16 29 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 30 H 0.05 1.89 6.55 -2.39 -0.02 1.87 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 37 H 0.07 1.56 7.93 -2.39 -0.02 1.54 16 38 H 0.03 0.70 7.85 -2.39 -0.02 0.68 16 39 H 0.09 1.33 8.03 -2.38 -0.02 1.31 16 40 H 0.10 1.44 5.85 -2.39 -0.01 1.42 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 0.82 7.29 -2.38 -0.02 0.80 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 47 H 0.05 0.72 7.07 -2.39 -0.02 0.70 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.06 0.73 6.98 -2.38 -0.02 0.72 16 Total: -1.00 -64.19 376.67 3.84 -60.35 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.85 Total: 11.44 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 5.07 Total: -42.29 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -4.11 Total: -76.72 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.19 3.84 -60.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.484 kcal (2) G-P(sol) polarization free energy of solvation -64.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds