Wall clock time and date at job start Mon Mar 30 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99982 * 2 1 4 4 C 1.52995 * 109.47185 * 66.04159 * 3 2 1 5 5 C 1.53006 * 109.46929 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.46929 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46915 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00041 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99659 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99443 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00281 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47047 * 90.00341 * 11 9 7 13 13 H 1.48501 * 109.47168 * 210.00421 * 11 9 7 14 14 H 1.48503 * 109.47029 * 329.99979 * 11 9 7 15 15 C 1.46900 * 111.00325 * 236.04355 * 2 1 3 16 16 C 1.53001 * 109.46826 * 293.95566 * 15 2 1 17 17 H 1.09006 * 115.56376 * 332.71358 * 16 15 2 18 18 C 1.52996 * 117.50067 * 118.40614 * 16 15 2 19 19 C 1.53002 * 60.00153 * 107.48947 * 18 16 15 20 20 H 1.08996 * 117.49634 * 107.49282 * 19 18 16 21 21 C 1.53005 * 117.49623 * 252.48717 * 19 18 16 22 22 C 1.53003 * 109.47092 * 34.69647 * 21 19 18 23 23 C 1.53005 * 109.46838 * 154.69299 * 21 19 18 24 24 C 1.52991 * 109.47256 * 274.69732 * 21 19 18 25 25 H 1.09003 * 109.47211 * 183.95873 * 1 2 3 26 26 H 1.08997 * 109.47674 * 303.95726 * 1 2 3 27 27 H 1.09005 * 109.46908 * 63.95676 * 1 2 3 28 28 H 1.08997 * 109.46937 * 186.04362 * 3 2 1 29 29 H 1.09001 * 109.46824 * 306.03878 * 3 2 1 30 30 H 1.08997 * 109.47348 * 299.99951 * 4 3 2 31 31 H 1.09001 * 109.47153 * 60.00559 * 4 3 2 32 32 H 1.08997 * 109.47095 * 300.00142 * 5 4 3 33 33 H 1.09001 * 109.46718 * 60.00328 * 5 4 3 34 34 H 1.08997 * 109.47348 * 299.99987 * 6 5 4 35 35 H 1.09001 * 109.47469 * 60.00149 * 6 5 4 36 36 H 0.97005 * 119.99616 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.47111 * 173.95928 * 15 2 1 38 38 H 1.08995 * 109.47248 * 53.95075 * 15 2 1 39 39 H 1.09004 * 117.49727 * 359.97438 * 18 16 15 40 40 H 1.09001 * 117.52053 * 214.96776 * 18 16 15 41 41 H 1.09005 * 109.46962 * 84.57746 * 22 21 19 42 42 H 1.08999 * 109.47185 * 204.57953 * 22 21 19 43 43 H 1.09003 * 109.47274 * 324.58342 * 22 21 19 44 44 H 1.08997 * 109.46427 * 55.21112 * 23 21 19 45 45 H 1.08997 * 109.46718 * 175.21106 * 23 21 19 46 46 H 1.08997 * 109.47104 * 295.21375 * 23 21 19 47 47 H 1.09005 * 109.47519 * 60.00146 * 24 21 19 48 48 H 1.08997 * 109.47378 * 180.02562 * 24 21 19 49 49 H 1.09003 * 109.47104 * 300.00117 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4857 1.3184 6 6 1.8156 4.1720 2.6363 7 6 2.3557 5.5789 2.6362 8 1 2.9038 5.9469 1.7815 9 6 2.1501 6.3963 3.7274 10 7 2.6210 7.6243 3.7271 11 14 1.2015 5.7600 5.2055 12 1 2.1443 5.1326 6.1660 13 1 0.4997 6.8894 5.8668 14 1 0.2063 4.7525 4.7586 15 6 1.9955 -0.7660 -1.1375 16 6 1.6315 -2.2426 -0.9702 17 1 1.4984 -2.5807 0.0575 18 6 0.7447 -2.8776 -2.0431 19 6 2.2304 -3.2354 -1.9685 20 1 2.4913 -4.2266 -1.5976 21 6 3.1474 -2.6760 -3.0581 22 6 2.6623 -1.2840 -3.4678 23 6 4.5772 -2.5805 -2.5219 24 6 3.1196 -3.6041 -4.2741 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3634 0.5740 0.8523 27 1 -0.3633 0.4512 -0.9234 28 1 3.0797 1.3444 -0.1082 29 1 1.5612 1.9273 -0.8310 30 1 0.5471 2.0846 1.4264 31 1 2.0657 1.5017 2.1491 32 1 3.2645 3.4583 1.2104 33 1 1.7463 4.0418 0.4874 34 1 0.7313 4.1995 2.7438 35 1 2.2492 3.6160 3.4676 36 1 2.4761 8.1995 4.4946 37 1 3.0798 -0.6612 -1.1755 38 1 1.5612 -0.3874 -2.0627 39 1 0.4203 -2.2433 -2.8681 40 1 0.0282 -3.6336 -1.7218 41 1 3.0714 -0.5407 -2.7834 42 1 2.9965 -1.0667 -4.4823 43 1 1.5734 -1.2527 -3.4294 44 1 4.8921 -3.5560 -2.1514 45 1 5.2450 -2.2630 -3.3226 46 1 4.6129 -1.8545 -1.7096 47 1 2.1009 -3.6721 -4.6561 48 1 3.7731 -3.2058 -5.0501 49 1 3.4652 -4.5958 -3.9822 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:51 Heat of formation + Delta-G solvation = 19.845822 kcal Electronic energy + Delta-G solvation = -20820.519020 eV Core-core repulsion = 17976.342109 eV Total energy + Delta-G solvation = -2844.176911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29486 -37.34743 -34.63713 -33.87178 -32.14488 -29.49844 -28.63349 -27.58876 -26.81282 -25.63955 -23.24822 -22.97828 -20.68476 -20.38803 -19.93738 -18.66493 -16.65818 -16.39173 -15.63643 -15.38691 -14.91160 -14.47701 -14.34137 -14.13739 -13.77896 -13.55246 -13.01601 -12.73955 -12.64096 -12.53141 -12.38787 -12.12484 -11.86682 -11.78689 -11.67051 -11.64151 -11.34081 -11.16003 -11.07157 -10.85418 -10.76899 -10.61123 -10.37493 -10.12247 -9.84307 -9.78768 -9.61141 -9.41784 -9.10568 -8.48918 -8.17805 -5.99807 -3.97102 3.34672 3.41505 3.46362 3.52759 3.94315 4.31220 4.49910 4.52247 4.56849 4.75682 4.90296 4.95796 5.17436 5.22065 5.25358 5.33755 5.34845 5.38026 5.40282 5.45885 5.48505 5.50424 5.57986 5.63730 5.68043 5.71221 5.76993 5.79505 5.85685 5.87528 5.97107 6.00611 6.09150 6.11293 6.14887 6.17012 6.19759 6.45649 6.71769 6.82918 6.97298 7.15580 7.22459 7.39441 7.52329 7.85839 8.59839 9.05678 9.63404 11.13858 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037307 B = 0.002880 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.355409 B = 9719.911785 C =10100.639136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.014 4.014 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.906 5.906 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.070 3.930 16 C -0.134 4.134 17 H 0.110 0.890 18 C -0.184 4.184 19 C -0.137 4.137 20 H 0.101 0.899 21 C -0.037 4.037 22 C -0.173 4.173 23 C -0.140 4.140 24 C -0.137 4.137 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.014 0.986 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 -24.368 -14.782 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.051 4.051 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.137 4.137 10 N -0.546 5.546 11 Si 0.709 3.291 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.057 4.057 16 C -0.153 4.153 17 H 0.128 0.872 18 C -0.221 4.221 19 C -0.156 4.156 20 H 0.120 0.880 21 C -0.037 4.037 22 C -0.229 4.229 23 C -0.198 4.198 24 C -0.195 4.195 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.556 -24.429 -14.251 28.325 hybrid contribution -0.783 0.127 0.136 0.805 sum -2.339 -24.302 -14.115 28.201 Atomic orbital electron populations 1.22397 0.87779 1.01719 1.00517 1.61979 1.07803 1.14280 1.42982 1.22196 0.99741 0.86995 0.98126 1.21705 1.00761 0.96781 0.96184 1.21424 0.99914 0.92771 0.99852 1.19565 0.96343 0.96142 0.93062 1.21200 1.35090 0.95769 1.03624 0.91147 1.25056 0.95408 0.94745 0.98480 1.69929 1.46569 1.07200 1.30868 0.86754 0.80773 0.78577 0.83045 1.20313 1.21488 1.18997 1.22633 0.99846 0.91320 0.91865 1.22344 1.03393 0.93666 0.95875 0.87212 1.23209 0.93266 1.03840 1.01795 1.22431 0.94274 0.99282 0.99591 0.88041 1.20027 0.94719 0.95088 0.93867 1.22932 1.01727 0.96700 1.01547 1.21876 0.95012 1.01934 1.00947 1.21836 1.01612 0.99076 0.96930 0.91705 0.91063 0.96133 0.91089 0.95143 0.92576 0.91742 0.92898 0.93123 0.96814 0.97093 0.92834 0.90071 0.92984 0.88598 0.89157 0.90633 0.93114 0.91537 0.92724 0.92694 0.92222 0.92732 0.92738 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.18 60.06 0.55 0.83 16 2 N -0.55 -6.87 4.76 -242.92 -1.16 -8.03 16 3 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 4 C -0.12 -1.93 5.15 -26.73 -0.14 -2.07 16 5 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 6 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 11 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 14 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 15 C 0.07 0.73 2.98 -3.82 -0.01 0.72 16 16 C -0.13 -1.24 4.80 -90.62 -0.43 -1.68 16 17 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.18 -1.48 9.59 -26.73 -0.26 -1.74 16 19 C -0.14 -1.10 4.97 -90.62 -0.45 -1.55 16 20 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 21 C -0.04 -0.28 0.74 -154.51 -0.11 -0.39 16 22 C -0.17 -1.38 6.75 37.16 0.25 -1.13 16 23 C -0.14 -1.08 8.36 37.16 0.31 -0.77 16 24 C -0.14 -0.93 8.35 37.15 0.31 -0.62 16 25 H 0.06 0.68 7.28 -51.93 -0.38 0.30 16 26 H 0.07 0.88 6.30 -51.93 -0.33 0.56 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 29 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.08 0.86 5.08 -51.93 -0.26 0.60 16 38 H 0.05 0.53 4.86 -51.93 -0.25 0.28 16 39 H 0.10 0.77 6.01 -51.93 -0.31 0.46 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.65 4.59 -51.93 -0.24 0.42 16 42 H 0.05 0.38 7.90 -51.93 -0.41 -0.03 16 43 H 0.07 0.54 3.99 -51.93 -0.21 0.34 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.50 6.65 -51.93 -0.35 0.16 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -30.51 361.01 -9.62 -40.13 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -9.33 Total: -3.39 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -0.68 Total: -23.99 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.38 Total: -35.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.51 -9.62 -40.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.973 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds