Wall clock time and date at job start Mon Mar 30 2020 08:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47077 * 2 1 4 4 C 1.52997 * 109.47412 * 120.00541 * 2 1 3 5 5 H 1.08997 * 109.47355 * 185.04624 * 4 2 1 6 6 C 1.53004 * 109.46842 * 305.03942 * 4 2 1 7 7 C 1.53005 * 109.46788 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47462 * 300.00091 * 7 6 4 9 9 H 1.08996 * 109.46955 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47209 * 300.00368 * 8 7 6 11 11 C 1.53004 * 109.46694 * 60.00344 * 8 7 6 12 12 C 1.52997 * 109.47252 * 65.03938 * 4 2 1 13 13 H 1.09001 * 109.47200 * 300.00201 * 12 4 2 14 14 N 1.46899 * 109.47040 * 60.00266 * 12 4 2 15 15 C 1.46891 * 111.00194 * 204.99917 * 14 12 4 16 16 H 1.09006 * 109.47505 * 324.99957 * 15 14 12 17 17 C 1.53004 * 109.47159 * 84.99733 * 15 14 12 18 18 C 1.53004 * 109.47475 * 204.99739 * 15 14 12 19 19 C 1.50700 * 109.46739 * 64.99958 * 18 15 14 20 20 H 1.08003 * 120.00449 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99864 * 180.02562 * 19 18 15 22 22 N 1.31521 * 120.00044 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00054 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47024 * 89.99978 * 23 21 19 25 25 H 1.48499 * 109.47096 * 210.00151 * 23 21 19 26 26 H 1.48501 * 109.46886 * 330.00273 * 23 21 19 27 27 H 1.09001 * 109.46756 * 299.99596 * 1 2 3 28 28 H 1.08996 * 109.47554 * 59.99737 * 1 2 3 29 29 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46756 * 240.00404 * 2 1 3 31 31 H 1.09000 * 109.46692 * 54.43252 * 3 2 1 32 32 H 1.08994 * 109.46972 * 174.43064 * 3 2 1 33 33 H 1.08993 * 109.47016 * 294.43327 * 3 2 1 34 34 H 1.09002 * 109.47116 * 60.00685 * 6 4 2 35 35 H 1.08996 * 109.47770 * 300.00286 * 6 4 2 36 36 H 1.09006 * 109.46974 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.46723 * 60.01037 * 7 6 4 38 38 H 1.08996 * 109.47529 * 59.99902 * 10 8 7 39 39 H 1.08999 * 109.46935 * 180.02562 * 10 8 7 40 40 H 1.09007 * 109.47294 * 299.99332 * 10 8 7 41 41 H 1.09001 * 109.47465 * 59.99957 * 11 8 7 42 42 H 1.09004 * 109.46543 * 180.02562 * 11 8 7 43 43 H 1.00902 * 111.00436 * 81.04354 * 14 12 4 44 44 H 1.08992 * 109.46950 * 299.99964 * 17 15 14 45 45 H 1.09002 * 109.46941 * 60.00657 * 17 15 14 46 46 H 1.09005 * 109.47139 * 179.97438 * 17 15 14 47 47 H 1.08996 * 109.47337 * 184.99999 * 18 15 14 48 48 H 1.08999 * 109.46883 * 305.00462 * 18 15 14 49 49 H 0.96997 * 119.99679 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1263 -0.6437 1.2955 6 6 1.4292 -0.0770 2.4952 7 6 1.9388 -0.7988 3.7444 8 6 1.5345 -2.2731 3.6822 9 1 1.8980 -2.7873 4.5719 10 6 0.0098 -2.3814 3.6169 11 6 2.1454 -2.9173 2.4361 12 6 1.6362 -2.1957 1.1873 13 1 0.5500 -2.2733 1.1410 14 7 2.2227 -2.8143 -0.0091 15 6 1.4375 -3.9793 -0.4381 16 1 1.0407 -4.4926 0.4378 17 6 0.2804 -3.5157 -1.3253 18 6 2.3337 -4.9359 -1.2273 19 6 3.4021 -5.4877 -0.3190 20 1 3.4380 -5.1867 0.7177 21 6 4.3337 -6.3770 -0.8112 22 7 5.2658 -6.8590 -0.0184 23 14 4.2711 -6.8983 -2.6039 24 1 5.0941 -5.9688 -3.4187 25 1 4.8042 -8.2779 -2.7372 26 1 2.8653 -6.8625 -3.0810 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.5975 1.9843 0.8360 32 1 3.1254 1.4441 0.0997 33 1 1.7604 1.9267 -0.9356 34 1 0.3430 -0.1547 2.4490 35 1 1.7169 0.9734 2.5393 36 1 1.5040 -0.3395 4.6322 37 1 3.0251 -0.7215 3.7908 38 1 -0.3533 -1.8673 2.7271 39 1 -0.2782 -3.4318 3.5731 40 1 -0.4254 -1.9225 4.5047 41 1 3.2317 -2.8401 2.4826 42 1 1.8570 -3.9675 2.3916 43 1 3.1867 -3.0666 0.1498 44 1 -0.3581 -2.8344 -0.7631 45 1 0.6772 -3.0026 -2.2013 46 1 -0.3020 -4.3803 -1.6440 47 1 1.7326 -5.7554 -1.6210 48 1 2.8006 -4.3985 -2.0527 49 1 5.9214 -7.4843 -0.3649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705953643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:05 Heat of formation + Delta-G solvation = -46.547968 kcal Electronic energy + Delta-G solvation = -22642.722911 eV Core-core repulsion = 19795.666949 eV Total energy + Delta-G solvation = -2847.055962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85227 -36.07533 -35.31979 -32.64240 -31.14364 -30.13193 -27.95572 -27.18717 -26.90907 -26.27710 -23.09820 -22.78540 -21.21514 -19.43340 -19.22757 -18.12349 -16.74157 -15.79326 -15.09558 -14.82024 -14.33691 -14.20839 -13.89670 -13.72485 -13.55318 -12.99658 -12.84971 -12.61077 -12.44508 -12.16361 -12.01663 -11.76413 -11.73975 -11.55699 -11.41710 -11.20787 -11.05638 -10.98667 -10.79937 -10.68567 -10.48168 -10.40919 -10.28549 -9.86370 -9.82476 -9.67949 -9.57840 -9.32110 -9.16997 -8.53947 -7.51840 -6.05239 -4.03018 3.31938 3.39272 3.43441 4.45639 4.75947 4.83651 4.92243 5.16449 5.24231 5.25698 5.29010 5.37077 5.55400 5.56858 5.60001 5.70009 5.77001 5.79938 5.82043 5.89617 5.91394 5.93685 6.02252 6.05970 6.09952 6.14072 6.15396 6.18664 6.23200 6.29739 6.35040 6.40959 6.43748 6.54848 6.57837 6.61225 6.72649 6.76679 6.84217 6.84998 6.87951 7.25558 7.34121 7.78631 8.02490 8.33947 8.51321 8.97818 9.58089 11.07697 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.005820 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.432483 B = 4809.846469 C = 5359.695595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.067 4.067 5 H 0.065 0.935 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.087 4.087 9 H 0.062 0.938 10 C -0.149 4.149 11 C -0.143 4.143 12 C 0.093 3.907 13 H 0.074 0.926 14 N -0.677 5.677 15 C 0.098 3.902 16 H 0.033 0.967 17 C -0.138 4.138 18 C -0.017 4.017 19 C -0.520 4.520 20 H 0.071 0.929 21 C 0.069 3.931 22 N -0.903 5.903 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.266 1.266 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.356 0.644 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.018 0.982 48 H 0.020 0.980 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 13.972 4.138 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.086 4.086 5 H 0.084 0.916 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.107 4.107 9 H 0.081 0.919 10 C -0.206 4.206 11 C -0.182 4.182 12 C -0.017 4.017 13 H 0.092 0.908 14 N -0.310 5.310 15 C -0.011 4.011 16 H 0.051 0.949 17 C -0.196 4.196 18 C -0.055 4.055 19 C -0.558 4.558 20 H 0.089 0.911 21 C -0.133 4.133 22 N -0.541 5.541 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.191 1.191 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.177 0.823 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.038 0.962 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.781 14.265 3.678 17.683 hybrid contribution 0.432 -1.131 -0.134 1.218 sum -9.350 13.133 3.544 16.506 Atomic orbital electron populations 1.21945 0.96345 1.01658 1.00472 1.21005 0.94989 0.94732 0.99563 1.21892 1.00763 0.97017 1.00724 1.21093 0.99851 0.94206 0.93423 0.91648 1.21722 1.00765 0.98702 0.94313 1.21565 1.00692 0.95256 0.97599 1.21036 0.95578 0.95741 0.98313 0.91928 1.21926 0.95775 1.01492 1.01410 1.22294 1.00726 1.00105 0.95107 1.21597 0.98905 0.92942 0.88280 0.90826 1.60653 1.07479 1.30374 1.32456 1.21337 0.93463 0.89910 0.96433 0.94857 1.21885 0.97859 0.99834 1.00057 1.19765 0.95197 0.94122 0.96371 1.21103 1.11132 1.25906 0.97670 0.91092 1.25007 0.95049 0.95738 0.97488 1.69920 1.16687 1.31902 1.35630 0.86772 0.78759 0.77732 0.85957 1.20310 1.21625 1.19099 0.93314 0.93687 0.92336 0.89309 0.93295 0.93048 0.93467 0.91610 0.92357 0.92735 0.92249 0.92074 0.92987 0.93387 0.91849 0.91694 0.82264 0.94003 0.92764 0.93631 0.96367 0.96209 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.46 37.16 0.31 -1.41 16 2 C -0.08 -1.07 2.61 -90.62 -0.24 -1.31 16 3 C -0.15 -1.63 8.81 37.16 0.33 -1.30 16 4 C -0.07 -0.88 1.68 -90.62 -0.15 -1.03 16 5 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.12 -1.34 4.20 -26.73 -0.11 -1.45 16 7 C -0.11 -1.32 5.45 -26.73 -0.15 -1.46 16 8 C -0.09 -1.13 3.19 -90.62 -0.29 -1.42 16 9 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 10 C -0.15 -1.77 8.50 37.15 0.32 -1.46 16 11 C -0.14 -2.26 4.68 -26.75 -0.13 -2.38 16 12 C 0.09 1.41 1.20 -67.74 -0.08 1.32 16 13 H 0.07 1.11 3.86 -51.93 -0.20 0.91 16 14 N -0.68 -12.18 5.20 -99.77 -0.52 -12.70 16 15 C 0.10 1.91 2.40 -67.71 -0.16 1.75 16 16 H 0.03 0.69 7.11 -51.93 -0.37 0.32 16 17 C -0.14 -2.31 9.40 37.16 0.35 -1.96 16 18 C -0.02 -0.40 3.64 -27.88 -0.10 -0.50 16 19 C -0.52 -14.21 8.67 -34.44 -0.30 -14.51 16 20 H 0.07 2.07 7.73 -52.48 -0.41 1.66 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 23 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 27 H 0.05 0.52 6.34 -51.93 -0.33 0.19 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.74 4.94 -51.93 -0.26 0.49 16 30 H 0.09 1.33 7.45 -51.93 -0.39 0.94 16 31 H 0.05 0.50 6.84 -51.93 -0.36 0.14 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.73 4.63 -51.93 -0.24 0.49 16 35 H 0.06 0.62 6.69 -51.93 -0.35 0.27 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 42 H 0.06 1.17 7.42 -51.93 -0.39 0.79 16 43 H 0.36 7.33 6.95 -39.29 -0.27 7.05 16 44 H 0.04 0.63 5.81 -51.93 -0.30 0.32 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 48 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -27.84 347.11 -8.79 -36.63 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -9.11 Total: 5.65 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -0.50 Total: -25.26 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.25 Total: -39.32 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.84 -8.79 -36.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.919 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds