Wall clock time and date at job start Mon Mar 30 2020 08:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47077 * 2 1 4 4 C 1.52997 * 109.47412 * 120.00541 * 2 1 3 5 5 H 1.08997 * 109.47355 * 185.04624 * 4 2 1 6 6 C 1.53004 * 109.46842 * 305.03942 * 4 2 1 7 7 C 1.53005 * 109.46788 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47462 * 300.00091 * 7 6 4 9 9 H 1.08996 * 109.46955 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47209 * 300.00368 * 8 7 6 11 11 C 1.53004 * 109.46694 * 60.00344 * 8 7 6 12 12 C 1.52997 * 109.47252 * 65.03938 * 4 2 1 13 13 H 1.09001 * 109.47200 * 300.00201 * 12 4 2 14 14 N 1.46899 * 109.47040 * 60.00266 * 12 4 2 15 15 C 1.46891 * 111.00194 * 204.99917 * 14 12 4 16 16 H 1.09006 * 109.47505 * 324.99957 * 15 14 12 17 17 C 1.53004 * 109.47159 * 84.99733 * 15 14 12 18 18 C 1.53004 * 109.47475 * 204.99739 * 15 14 12 19 19 C 1.50700 * 109.46739 * 64.99958 * 18 15 14 20 20 H 1.08003 * 120.00449 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99864 * 180.02562 * 19 18 15 22 22 N 1.31521 * 120.00044 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00054 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47024 * 89.99978 * 23 21 19 25 25 H 1.48499 * 109.47096 * 210.00151 * 23 21 19 26 26 H 1.48501 * 109.46886 * 330.00273 * 23 21 19 27 27 H 1.09001 * 109.46756 * 299.99596 * 1 2 3 28 28 H 1.08996 * 109.47554 * 59.99737 * 1 2 3 29 29 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46756 * 240.00404 * 2 1 3 31 31 H 1.09000 * 109.46692 * 54.43252 * 3 2 1 32 32 H 1.08994 * 109.46972 * 174.43064 * 3 2 1 33 33 H 1.08993 * 109.47016 * 294.43327 * 3 2 1 34 34 H 1.09002 * 109.47116 * 60.00685 * 6 4 2 35 35 H 1.08996 * 109.47770 * 300.00286 * 6 4 2 36 36 H 1.09006 * 109.46974 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.46723 * 60.01037 * 7 6 4 38 38 H 1.08996 * 109.47529 * 59.99902 * 10 8 7 39 39 H 1.08999 * 109.46935 * 180.02562 * 10 8 7 40 40 H 1.09007 * 109.47294 * 299.99332 * 10 8 7 41 41 H 1.09001 * 109.47465 * 59.99957 * 11 8 7 42 42 H 1.09004 * 109.46543 * 180.02562 * 11 8 7 43 43 H 1.00902 * 111.00436 * 81.04354 * 14 12 4 44 44 H 1.08992 * 109.46950 * 299.99964 * 17 15 14 45 45 H 1.09002 * 109.46941 * 60.00657 * 17 15 14 46 46 H 1.09005 * 109.47139 * 179.97438 * 17 15 14 47 47 H 1.08996 * 109.47337 * 184.99999 * 18 15 14 48 48 H 1.08999 * 109.46883 * 305.00462 * 18 15 14 49 49 H 0.96997 * 119.99679 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1263 -0.6437 1.2955 6 6 1.4292 -0.0770 2.4952 7 6 1.9388 -0.7988 3.7444 8 6 1.5345 -2.2731 3.6822 9 1 1.8980 -2.7873 4.5719 10 6 0.0098 -2.3814 3.6169 11 6 2.1454 -2.9173 2.4361 12 6 1.6362 -2.1957 1.1873 13 1 0.5500 -2.2733 1.1410 14 7 2.2227 -2.8143 -0.0091 15 6 1.4375 -3.9793 -0.4381 16 1 1.0407 -4.4926 0.4378 17 6 0.2804 -3.5157 -1.3253 18 6 2.3337 -4.9359 -1.2273 19 6 3.4021 -5.4877 -0.3190 20 1 3.4380 -5.1867 0.7177 21 6 4.3337 -6.3770 -0.8112 22 7 5.2658 -6.8590 -0.0184 23 14 4.2711 -6.8983 -2.6039 24 1 5.0941 -5.9688 -3.4187 25 1 4.8042 -8.2779 -2.7372 26 1 2.8653 -6.8625 -3.0810 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.5975 1.9843 0.8360 32 1 3.1254 1.4441 0.0997 33 1 1.7604 1.9267 -0.9356 34 1 0.3430 -0.1547 2.4490 35 1 1.7169 0.9734 2.5393 36 1 1.5040 -0.3395 4.6322 37 1 3.0251 -0.7215 3.7908 38 1 -0.3533 -1.8673 2.7271 39 1 -0.2782 -3.4318 3.5731 40 1 -0.4254 -1.9225 4.5047 41 1 3.2317 -2.8401 2.4826 42 1 1.8570 -3.9675 2.3916 43 1 3.1867 -3.0666 0.1498 44 1 -0.3581 -2.8344 -0.7631 45 1 0.6772 -3.0026 -2.2013 46 1 -0.3020 -4.3803 -1.6440 47 1 1.7326 -5.7554 -1.6210 48 1 2.8006 -4.3985 -2.0527 49 1 5.9214 -7.4843 -0.3649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705953643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:04 Heat of formation + Delta-G solvation = -61.277111 kcal Electronic energy + Delta-G solvation = -22643.361615 eV Core-core repulsion = 19795.666949 eV Total energy + Delta-G solvation = -2847.694666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01731 -37.61232 -36.34403 -34.69105 -32.67719 -31.12674 -29.79328 -28.39887 -27.97601 -27.29449 -24.70670 -24.08097 -22.53764 -21.00082 -20.32942 -19.28309 -18.88278 -17.03063 -16.55805 -16.26667 -15.82998 -15.26253 -15.15983 -15.01361 -14.85024 -14.47271 -14.27149 -13.93590 -13.55349 -13.48626 -13.46251 -13.22000 -13.07855 -12.70823 -12.65539 -12.55608 -12.41503 -12.23052 -12.11736 -11.94135 -11.78001 -11.67701 -11.54740 -11.43564 -11.28933 -11.19854 -10.86833 -10.80967 -10.75091 -10.61986 -9.00601 -8.27865 -6.30089 1.35531 1.36289 1.48050 2.36311 3.06193 3.46563 3.72732 3.85596 4.06447 4.18674 4.21391 4.27290 4.31633 4.48426 4.51632 4.56903 4.61170 4.62692 4.64930 4.71786 4.80856 4.82645 4.95367 4.98458 4.99584 5.07047 5.09527 5.12302 5.13973 5.16279 5.19720 5.22313 5.27087 5.31933 5.35214 5.41076 5.44116 5.47551 5.53369 5.57625 5.65578 5.71356 5.76578 5.84652 6.26847 6.52489 6.67718 6.77214 7.34032 8.88210 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.005820 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.432483 B = 4809.846469 C = 5359.695595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.062 4.062 5 H 0.046 0.954 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.085 4.085 9 H 0.059 0.941 10 C -0.145 4.145 11 C -0.139 4.139 12 C 0.099 3.901 13 H 0.081 0.919 14 N -0.674 5.674 15 C 0.102 3.898 16 H 0.015 0.985 17 C -0.129 4.129 18 C -0.012 4.012 19 C -0.518 4.518 20 H 0.035 0.965 21 C 0.007 3.993 22 N -0.950 5.950 23 Si 0.947 3.053 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.250 1.250 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.030 0.970 43 H 0.336 0.664 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.784 16.053 3.446 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.199 4.199 4 C -0.081 4.081 5 H 0.065 0.935 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.105 4.105 9 H 0.077 0.923 10 C -0.202 4.202 11 C -0.178 4.178 12 C -0.011 4.011 13 H 0.099 0.901 14 N -0.304 5.304 15 C -0.008 4.008 16 H 0.034 0.966 17 C -0.186 4.186 18 C -0.050 4.050 19 C -0.556 4.556 20 H 0.053 0.947 21 C -0.189 4.189 22 N -0.591 5.591 23 Si 0.771 3.229 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.173 1.173 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.155 0.845 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.961 16.365 2.987 20.489 hybrid contribution 1.138 -1.787 0.177 2.126 sum -10.823 14.577 3.164 18.430 Atomic orbital electron populations 1.21905 0.95086 1.01287 1.01723 1.20941 0.95986 0.95422 0.97780 1.21843 1.00400 0.95888 1.01813 1.21044 0.98949 0.92788 0.95312 0.93518 1.21699 1.01178 0.99276 0.92685 1.21553 1.00408 0.93974 0.98855 1.21027 0.96491 0.96702 0.96249 0.92273 1.21891 0.94483 1.01131 1.02672 1.22216 0.99344 0.98618 0.97644 1.21658 0.98907 0.93995 0.86538 0.90093 1.60778 1.06212 1.29315 1.34088 1.21254 0.93835 0.89782 0.95899 0.96648 1.21779 0.96700 1.00598 0.99553 1.19709 0.94573 0.94813 0.95919 1.21359 1.12050 1.25377 0.96810 0.94654 1.25918 0.94729 0.96023 1.02278 1.70071 1.17920 1.33159 1.37937 0.85705 0.79644 0.77320 0.80203 1.19497 1.21378 1.17336 0.91688 0.92854 0.93432 0.91910 0.91727 0.93721 0.92735 0.90456 0.90610 0.90347 0.93108 0.91708 0.94106 0.91096 0.94355 0.95091 0.84519 0.92033 0.92526 0.92720 0.96309 0.96126 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.46 71.98 0.61 -2.31 16 2 C -0.08 -1.95 2.61 -10.79 -0.03 -1.98 16 3 C -0.14 -2.82 8.81 71.98 0.63 -2.19 16 4 C -0.06 -1.58 1.68 -10.79 -0.02 -1.60 16 5 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 6 C -0.11 -2.23 4.20 30.60 0.13 -2.10 16 7 C -0.11 -2.35 5.45 30.59 0.17 -2.19 16 8 C -0.09 -2.18 3.19 -10.80 -0.03 -2.22 16 9 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 10 C -0.14 -3.20 8.50 71.98 0.61 -2.58 16 11 C -0.14 -4.64 4.68 30.58 0.14 -4.49 16 12 C 0.10 3.02 1.20 44.90 0.05 3.07 16 13 H 0.08 2.38 3.86 -2.39 -0.01 2.37 16 14 N -0.67 -24.97 5.20 -469.55 -2.44 -27.41 16 15 C 0.10 4.02 2.40 44.92 0.11 4.13 16 16 H 0.02 0.66 7.11 -2.38 -0.02 0.64 16 17 C -0.13 -4.07 9.40 71.98 0.68 -3.39 16 18 C -0.01 -0.59 3.64 29.85 0.11 -0.48 16 19 C -0.52 -29.42 8.67 25.60 0.22 -29.20 16 20 H 0.04 2.20 7.73 -2.91 -0.02 2.18 16 21 C 0.01 0.43 5.47 84.65 0.46 0.89 16 22 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 23 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 27 H 0.06 1.12 6.34 -2.39 -0.02 1.11 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.07 4.94 -2.39 -0.01 1.06 16 30 H 0.06 1.82 7.45 -2.39 -0.02 1.81 16 31 H 0.06 1.08 6.84 -2.39 -0.02 1.07 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.42 4.63 -2.39 -0.01 1.41 16 35 H 0.08 1.32 6.69 -2.39 -0.02 1.31 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.38 4.81 -2.39 -0.01 1.37 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 42 H 0.03 1.21 7.42 -2.38 -0.02 1.19 16 43 H 0.34 14.72 6.95 -89.69 -0.62 14.09 16 44 H 0.06 1.70 5.81 -2.39 -0.01 1.69 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 48 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 49 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -62.24 347.11 3.81 -58.43 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.22 Total: 28.11 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 3.84 Total: -46.64 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.14 Total: -86.88 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -62.24 3.81 -58.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.848 kcal (2) G-P(sol) polarization free energy of solvation -62.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds