Wall clock time and date at job start Mon Mar 30 2020 08:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47087 * 2 1 4 4 C 1.53001 * 109.46791 * 120.00343 * 2 1 3 5 5 H 1.08995 * 109.47161 * 299.99194 * 4 2 1 6 6 C 1.52995 * 109.47585 * 59.99962 * 4 2 1 7 7 C 1.52991 * 109.47211 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47000 * 299.99518 * 7 6 4 9 9 H 1.09002 * 109.47149 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47111 * 299.99976 * 8 7 6 11 11 C 1.52998 * 109.47100 * 60.00239 * 8 7 6 12 12 C 1.52997 * 109.47149 * 300.00257 * 11 8 7 13 13 H 1.09000 * 109.47468 * 180.02562 * 12 11 8 14 14 N 1.46902 * 109.46945 * 299.99674 * 12 11 8 15 15 C 1.46900 * 111.00270 * 256.74773 * 14 12 11 16 16 H 1.08995 * 109.46726 * 14.02962 * 15 14 12 17 17 C 1.52997 * 109.47171 * 254.02730 * 15 14 12 18 18 C 1.53004 * 109.47046 * 134.02637 * 15 14 12 19 19 C 1.50706 * 109.47145 * 272.84564 * 18 15 14 20 20 H 1.07996 * 119.99780 * 359.25510 * 19 18 15 21 21 C 1.37870 * 119.99673 * 179.25407 * 19 18 15 22 22 N 1.31516 * 119.99690 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00502 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47043 * 89.99962 * 23 21 19 25 25 H 1.48503 * 109.47340 * 209.99975 * 23 21 19 26 26 H 1.48503 * 109.47004 * 330.00155 * 23 21 19 27 27 H 1.09011 * 109.46932 * 300.00047 * 1 2 3 28 28 H 1.09002 * 109.47111 * 59.99866 * 1 2 3 29 29 H 1.08993 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46610 * 239.99875 * 2 1 3 31 31 H 1.09002 * 109.47255 * 300.00046 * 3 2 1 32 32 H 1.09001 * 109.47155 * 60.00687 * 3 2 1 33 33 H 1.09000 * 109.47162 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46682 * 299.99511 * 6 4 2 35 35 H 1.09001 * 109.47155 * 59.99170 * 6 4 2 36 36 H 1.09001 * 109.47757 * 59.99517 * 7 6 4 37 37 H 1.09002 * 109.47090 * 180.02562 * 7 6 4 38 38 H 1.08998 * 109.46779 * 50.41877 * 10 8 7 39 39 H 1.09006 * 109.46862 * 170.41321 * 10 8 7 40 40 H 1.08996 * 109.47611 * 290.41320 * 10 8 7 41 41 H 1.09000 * 109.47517 * 179.97438 * 11 8 7 42 42 H 1.09003 * 109.46795 * 59.99909 * 11 8 7 43 43 H 1.00899 * 111.00227 * 132.79675 * 14 12 11 44 44 H 1.09005 * 109.46981 * 60.00068 * 17 15 14 45 45 H 1.09005 * 109.47076 * 179.97438 * 17 15 14 46 46 H 1.08995 * 109.47485 * 299.99767 * 17 15 14 47 47 H 1.08998 * 109.47005 * 32.84559 * 18 15 14 48 48 H 1.09002 * 109.46855 * 152.84380 * 18 15 14 49 49 H 0.97003 * 119.99899 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 2.0394 -2.8848 2.4987 8 6 3.5694 -2.8849 2.4993 9 1 3.9324 -3.3990 3.3893 10 6 4.0799 -3.6064 1.2504 11 6 4.0795 -1.4425 2.4993 12 6 3.5700 -0.7213 1.2499 13 1 3.9337 0.3062 1.2496 14 7 4.0601 -1.4140 0.0507 15 6 5.1776 -0.6820 -0.5603 16 1 5.5497 0.0646 0.1412 17 6 4.6959 0.0120 -1.8360 18 6 6.3009 -1.6617 -0.9058 19 6 7.2013 -1.8355 0.2901 20 1 7.0002 -1.2915 1.2011 21 6 8.2819 -2.6891 0.2211 22 7 9.0680 -2.8403 1.2646 23 14 8.6302 -3.6295 -1.3548 24 1 9.5262 -2.8249 -2.2237 25 1 9.2875 -4.9200 -1.0262 26 1 7.3539 -3.8914 -2.0674 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 0.4400 -2.1637 1.2493 35 1 1.8932 -2.6776 0.3592 36 1 1.6758 -2.3709 3.3886 37 1 1.6764 -3.9126 2.4985 38 1 3.5840 -3.2010 0.3685 39 1 5.1564 -3.4606 1.1611 40 1 3.8630 -4.6715 1.3319 41 1 5.1695 -1.4425 2.5002 42 1 3.7158 -0.9285 3.3892 43 1 3.3149 -1.5569 -0.6143 44 1 3.8957 0.7100 -1.5898 45 1 5.5250 0.5555 -2.2891 46 1 4.3239 -0.7346 -2.5375 47 1 5.8711 -2.6251 -1.1801 48 1 6.8796 -1.2706 -1.7426 49 1 9.8280 -3.4411 1.2162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705953644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:07 Heat of formation + Delta-G solvation = -22.462376 kcal Electronic energy + Delta-G solvation = -23162.863856 eV Core-core repulsion = 20316.852323 eV Total energy + Delta-G solvation = -2846.011532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06530 -35.68905 -35.37053 -32.49060 -30.92253 -30.16827 -28.15975 -27.63940 -26.94853 -25.61589 -22.67606 -22.31946 -21.47887 -19.78528 -19.42332 -17.99147 -16.56729 -15.88570 -15.29145 -14.62118 -14.39966 -14.13137 -13.69785 -13.37029 -13.09021 -12.94318 -12.81423 -12.62971 -12.30400 -12.16314 -12.04597 -11.74800 -11.61827 -11.58943 -11.51605 -11.06932 -11.02286 -10.87109 -10.67682 -10.36159 -10.34258 -10.24594 -10.03892 -9.87090 -9.78096 -9.56263 -9.34935 -9.21748 -8.97555 -8.38337 -7.22911 -5.89063 -3.82429 3.39151 3.47220 3.51735 4.58219 4.72734 4.77712 4.85882 4.93955 5.24245 5.37466 5.41090 5.46906 5.54860 5.58224 5.66914 5.71890 5.77673 5.81394 5.85751 5.89130 5.91291 5.94880 5.95858 6.04387 6.06628 6.13965 6.18530 6.32205 6.32438 6.46410 6.49393 6.51172 6.57079 6.59734 6.68179 6.86802 6.93847 6.99332 7.07396 7.32510 7.33662 7.43390 7.77947 7.95359 8.03027 8.19287 8.72620 9.18075 9.75050 11.24740 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.006753 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.620999 B = 4145.360611 C = 4825.331792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.152 4.152 4 C -0.090 4.090 5 H 0.067 0.933 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.076 4.076 9 H 0.050 0.950 10 C -0.141 4.141 11 C -0.102 4.102 12 C 0.097 3.903 13 H 0.049 0.951 14 N -0.652 5.652 15 C 0.093 3.907 16 H 0.064 0.936 17 C -0.180 4.180 18 C -0.003 4.003 19 C -0.490 4.490 20 H 0.070 0.930 21 C 0.063 3.937 22 N -0.909 5.909 23 Si 0.874 3.126 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.266 1.266 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.009 0.991 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.326 0.674 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.025 0.975 48 H 0.005 0.995 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.059 4.784 -1.657 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.209 4.209 4 C -0.110 4.110 5 H 0.086 0.914 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.094 4.094 9 H 0.068 0.932 10 C -0.198 4.198 11 C -0.140 4.140 12 C -0.013 4.013 13 H 0.066 0.934 14 N -0.285 5.285 15 C -0.016 4.016 16 H 0.082 0.918 17 C -0.239 4.239 18 C -0.041 4.041 19 C -0.529 4.529 20 H 0.088 0.912 21 C -0.136 4.136 22 N -0.550 5.550 23 Si 0.703 3.297 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.190 1.190 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.028 0.972 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.146 0.854 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.044 0.956 48 H 0.023 0.977 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.494 4.270 -1.253 17.084 hybrid contribution -0.087 0.205 -1.086 1.109 sum -16.581 4.474 -2.339 17.333 Atomic orbital electron populations 1.21868 0.95558 1.01689 1.01177 1.21197 0.95459 0.96149 0.98660 1.21961 1.01770 0.95995 1.01149 1.21518 0.96066 0.96016 0.97353 0.91410 1.21611 0.98824 0.95030 0.99427 1.21548 0.97003 0.99226 0.97076 1.20873 0.93232 0.96196 0.99127 0.93156 1.22226 1.04536 0.95082 0.97991 1.21575 1.02204 0.95133 0.95078 1.21612 0.91677 0.95582 0.92425 0.93356 1.61328 1.10675 1.48800 1.07679 1.21810 0.92116 0.94922 0.92796 0.91808 1.22631 1.00888 1.00400 0.99973 1.19639 0.92847 0.94946 0.96620 1.21078 1.08374 1.24796 0.98604 0.91211 1.24980 0.96223 0.96717 0.95722 1.69918 1.16956 1.38477 1.29602 0.86873 0.78588 0.79561 0.84716 1.20869 1.21821 1.19046 0.93013 0.93230 0.92383 0.91208 0.93192 0.92961 0.91839 0.92925 0.90991 0.93314 0.92930 0.89435 0.90203 0.97197 0.90313 0.93868 0.85353 0.93507 0.92635 0.93166 0.95649 0.97726 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.84 37.16 0.33 -1.04 16 2 C -0.10 -1.03 2.32 -90.62 -0.21 -1.24 16 3 C -0.15 -1.63 8.08 37.15 0.30 -1.33 16 4 C -0.09 -1.09 1.52 -90.62 -0.14 -1.23 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.11 -1.35 4.48 -26.74 -0.12 -1.47 16 7 C -0.11 -1.48 5.45 -26.73 -0.15 -1.62 16 8 C -0.08 -1.23 3.19 -90.62 -0.29 -1.52 16 9 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 10 C -0.14 -2.59 7.76 37.16 0.29 -2.30 16 11 C -0.10 -1.71 5.30 -26.73 -0.14 -1.85 16 12 C 0.10 1.45 1.97 -67.71 -0.13 1.31 16 13 H 0.05 0.76 5.45 -51.93 -0.28 0.47 16 14 N -0.65 -10.59 2.27 -99.74 -0.23 -10.81 16 15 C 0.09 1.71 2.74 -67.71 -0.19 1.53 16 16 H 0.06 1.29 6.75 -51.93 -0.35 0.94 16 17 C -0.18 -2.76 8.91 37.16 0.33 -2.43 16 18 C 0.00 -0.06 3.89 -27.88 -0.11 -0.17 16 19 C -0.49 -13.46 8.92 -34.44 -0.31 -13.77 16 20 H 0.07 2.08 7.27 -52.49 -0.38 1.70 16 21 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 22 N -0.91 -28.06 13.96 55.43 0.77 -27.28 16 23 Si 0.87 22.05 27.48 -169.99 -4.67 17.38 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.27 -6.47 6.52 56.52 0.37 -6.10 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.07 0.80 6.38 -51.93 -0.33 0.47 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.77 4.99 -51.93 -0.26 0.51 16 34 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 35 H 0.07 0.94 5.38 -51.93 -0.28 0.66 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.51 3.44 -51.93 -0.18 1.33 16 39 H 0.08 1.81 7.46 -51.93 -0.39 1.43 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.33 4.80 4.52 -39.29 -0.18 4.62 16 44 H 0.05 0.62 5.76 -51.93 -0.30 0.32 16 45 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.03 0.60 7.07 -51.93 -0.37 0.24 16 48 H 0.00 0.11 7.32 -51.93 -0.38 -0.27 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -28.58 341.50 -8.58 -37.17 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.98 Total: 3.81 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -0.63 Total: -25.40 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.55 Total: -38.10 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.58 -8.58 -37.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.703 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds