Wall clock time and date at job start Mon Mar 30 2020 08:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47087 * 2 1 4 4 C 1.53001 * 109.46791 * 120.00343 * 2 1 3 5 5 H 1.08995 * 109.47161 * 299.99194 * 4 2 1 6 6 C 1.52995 * 109.47585 * 59.99962 * 4 2 1 7 7 C 1.52991 * 109.47211 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47000 * 299.99518 * 7 6 4 9 9 H 1.09002 * 109.47149 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47111 * 299.99976 * 8 7 6 11 11 C 1.52998 * 109.47100 * 60.00239 * 8 7 6 12 12 C 1.52997 * 109.47149 * 300.00257 * 11 8 7 13 13 H 1.09000 * 109.47468 * 180.02562 * 12 11 8 14 14 N 1.46902 * 109.46945 * 299.99674 * 12 11 8 15 15 C 1.46900 * 111.00270 * 256.74773 * 14 12 11 16 16 H 1.08995 * 109.46726 * 14.02962 * 15 14 12 17 17 C 1.52997 * 109.47171 * 254.02730 * 15 14 12 18 18 C 1.53004 * 109.47046 * 134.02637 * 15 14 12 19 19 C 1.50706 * 109.47145 * 272.84564 * 18 15 14 20 20 H 1.07996 * 119.99780 * 359.25510 * 19 18 15 21 21 C 1.37870 * 119.99673 * 179.25407 * 19 18 15 22 22 N 1.31516 * 119.99690 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00502 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47043 * 89.99962 * 23 21 19 25 25 H 1.48503 * 109.47340 * 209.99975 * 23 21 19 26 26 H 1.48503 * 109.47004 * 330.00155 * 23 21 19 27 27 H 1.09011 * 109.46932 * 300.00047 * 1 2 3 28 28 H 1.09002 * 109.47111 * 59.99866 * 1 2 3 29 29 H 1.08993 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46610 * 239.99875 * 2 1 3 31 31 H 1.09002 * 109.47255 * 300.00046 * 3 2 1 32 32 H 1.09001 * 109.47155 * 60.00687 * 3 2 1 33 33 H 1.09000 * 109.47162 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46682 * 299.99511 * 6 4 2 35 35 H 1.09001 * 109.47155 * 59.99170 * 6 4 2 36 36 H 1.09001 * 109.47757 * 59.99517 * 7 6 4 37 37 H 1.09002 * 109.47090 * 180.02562 * 7 6 4 38 38 H 1.08998 * 109.46779 * 50.41877 * 10 8 7 39 39 H 1.09006 * 109.46862 * 170.41321 * 10 8 7 40 40 H 1.08996 * 109.47611 * 290.41320 * 10 8 7 41 41 H 1.09000 * 109.47517 * 179.97438 * 11 8 7 42 42 H 1.09003 * 109.46795 * 59.99909 * 11 8 7 43 43 H 1.00899 * 111.00227 * 132.79675 * 14 12 11 44 44 H 1.09005 * 109.46981 * 60.00068 * 17 15 14 45 45 H 1.09005 * 109.47076 * 179.97438 * 17 15 14 46 46 H 1.08995 * 109.47485 * 299.99767 * 17 15 14 47 47 H 1.08998 * 109.47005 * 32.84559 * 18 15 14 48 48 H 1.09002 * 109.46855 * 152.84380 * 18 15 14 49 49 H 0.97003 * 119.99899 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 2.0394 -2.8848 2.4987 8 6 3.5694 -2.8849 2.4993 9 1 3.9324 -3.3990 3.3893 10 6 4.0799 -3.6064 1.2504 11 6 4.0795 -1.4425 2.4993 12 6 3.5700 -0.7213 1.2499 13 1 3.9337 0.3062 1.2496 14 7 4.0601 -1.4140 0.0507 15 6 5.1776 -0.6820 -0.5603 16 1 5.5497 0.0646 0.1412 17 6 4.6959 0.0120 -1.8360 18 6 6.3009 -1.6617 -0.9058 19 6 7.2013 -1.8355 0.2901 20 1 7.0002 -1.2915 1.2011 21 6 8.2819 -2.6891 0.2211 22 7 9.0680 -2.8403 1.2646 23 14 8.6302 -3.6295 -1.3548 24 1 9.5262 -2.8249 -2.2237 25 1 9.2875 -4.9200 -1.0262 26 1 7.3539 -3.8914 -2.0674 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 0.4400 -2.1637 1.2493 35 1 1.8932 -2.6776 0.3592 36 1 1.6758 -2.3709 3.3886 37 1 1.6764 -3.9126 2.4985 38 1 3.5840 -3.2010 0.3685 39 1 5.1564 -3.4606 1.1611 40 1 3.8630 -4.6715 1.3319 41 1 5.1695 -1.4425 2.5002 42 1 3.7158 -0.9285 3.3892 43 1 3.3149 -1.5569 -0.6143 44 1 3.8957 0.7100 -1.5898 45 1 5.5250 0.5555 -2.2891 46 1 4.3239 -0.7346 -2.5375 47 1 5.8711 -2.6251 -1.1801 48 1 6.8796 -1.2706 -1.7426 49 1 9.8280 -3.4411 1.2162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705953644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:06 Heat of formation + Delta-G solvation = -37.064918 kcal Electronic energy + Delta-G solvation = -23163.497069 eV Core-core repulsion = 20316.852323 eV Total energy + Delta-G solvation = -2846.644746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25863 -37.17754 -36.40903 -34.56852 -32.38644 -31.28282 -29.94584 -28.92973 -27.88949 -26.85730 -24.58955 -23.39037 -22.68906 -21.43061 -20.43548 -19.28275 -18.72076 -17.15298 -16.49809 -16.22982 -15.73930 -15.54916 -14.87004 -14.80476 -14.45745 -14.18794 -14.06689 -13.99515 -13.88244 -13.46320 -13.21999 -13.08330 -12.96556 -12.87117 -12.65358 -12.62692 -12.22451 -12.16473 -12.02310 -11.85610 -11.65540 -11.62609 -11.47176 -11.40000 -11.18740 -11.04555 -10.99880 -10.71797 -10.63164 -10.46983 -8.61015 -8.15783 -6.12789 1.36253 1.39226 1.50489 2.43695 3.19747 3.47816 3.79406 3.80987 4.02024 4.22488 4.28440 4.31528 4.36249 4.44732 4.52083 4.59899 4.65972 4.69572 4.74586 4.78956 4.80793 4.90106 4.97801 5.03715 5.06693 5.12336 5.12989 5.17968 5.21648 5.24691 5.26800 5.31961 5.38293 5.40865 5.43555 5.51513 5.54935 5.55684 5.57222 5.70209 5.73127 5.82076 5.85489 6.19601 6.45408 6.55212 6.90358 6.95427 7.47545 9.01575 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.006753 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.620999 B = 4145.360611 C = 4825.331792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.081 4.081 5 H 0.075 0.925 6 C -0.108 4.108 7 C -0.103 4.103 8 C -0.076 4.076 9 H 0.035 0.965 10 C -0.131 4.131 11 C -0.100 4.100 12 C 0.103 3.897 13 H 0.040 0.960 14 N -0.659 5.659 15 C 0.102 3.898 16 H 0.038 0.962 17 C -0.170 4.170 18 C 0.001 3.999 19 C -0.481 4.481 20 H 0.027 0.973 21 C -0.001 4.001 22 N -0.960 5.960 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.294 1.294 26 H -0.248 1.248 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.025 0.975 40 H 0.014 0.986 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.339 0.661 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.022 0.978 48 H 0.008 0.992 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.452 5.047 -3.684 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.100 4.100 5 H 0.094 0.906 6 C -0.145 4.145 7 C -0.141 4.141 8 C -0.095 4.095 9 H 0.053 0.947 10 C -0.188 4.188 11 C -0.138 4.138 12 C -0.007 4.007 13 H 0.058 0.942 14 N -0.293 5.293 15 C -0.008 4.008 16 H 0.056 0.944 17 C -0.228 4.228 18 C -0.037 4.037 19 C -0.519 4.519 20 H 0.045 0.955 21 C -0.196 4.196 22 N -0.603 5.603 23 Si 0.767 3.233 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.171 1.171 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.162 0.838 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.026 0.974 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.915 4.546 -3.297 20.692 hybrid contribution 0.996 0.162 -0.325 1.060 sum -18.919 4.708 -3.622 19.830 Atomic orbital electron populations 1.21830 0.93822 1.02325 1.01894 1.21155 0.96784 0.95692 0.97386 1.21945 1.00535 0.96298 1.02016 1.21432 0.93032 0.96729 0.98763 0.90638 1.21607 1.00394 0.94289 0.98223 1.21478 0.93655 1.00404 0.98549 1.20854 0.96121 0.95068 0.97429 0.94675 1.22103 1.01070 0.95825 0.99830 1.21518 0.98714 0.96450 0.97159 1.21513 0.94175 0.94403 0.90616 0.94219 1.61068 1.10766 1.49088 1.08333 1.21480 0.91718 0.93391 0.94220 0.94401 1.22491 1.01541 1.00821 0.97943 1.19601 0.93600 0.96081 0.94424 1.21328 1.08716 1.23232 0.98646 0.95494 1.25879 0.96298 0.98159 0.99257 1.70091 1.17978 1.40003 1.32222 0.85793 0.79147 0.77892 0.80516 1.19783 1.22004 1.17115 0.92556 0.92355 0.91764 0.91482 0.92000 0.92515 0.93684 0.90196 0.91631 0.91973 0.91945 0.87964 0.95538 0.96721 0.95919 0.92401 0.83841 0.91128 0.92803 0.91818 0.95957 0.97369 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.84 71.98 0.64 -1.38 16 2 C -0.09 -1.65 2.32 -10.79 -0.03 -1.67 16 3 C -0.15 -2.81 8.08 71.98 0.58 -2.23 16 4 C -0.08 -1.73 1.52 -10.79 -0.02 -1.75 16 5 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.11 -2.24 4.48 30.59 0.14 -2.10 16 7 C -0.10 -2.50 5.45 30.59 0.17 -2.34 16 8 C -0.08 -2.51 3.19 -10.79 -0.03 -2.55 16 9 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 10 C -0.13 -4.91 7.76 71.98 0.56 -4.35 16 11 C -0.10 -3.52 5.30 30.59 0.16 -3.35 16 12 C 0.10 3.05 1.97 44.91 0.09 3.14 16 13 H 0.04 1.26 5.45 -2.39 -0.01 1.25 16 14 N -0.66 -21.19 2.27 -469.47 -1.07 -22.26 16 15 C 0.10 3.77 2.74 44.92 0.12 3.89 16 16 H 0.04 1.60 6.75 -2.39 -0.02 1.58 16 17 C -0.17 -4.82 8.91 71.98 0.64 -4.18 16 18 C 0.00 0.04 3.89 29.85 0.12 0.16 16 19 C -0.48 -27.82 8.92 25.60 0.23 -27.59 16 20 H 0.03 1.75 7.27 -2.91 -0.02 1.72 16 21 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 22 N -0.96 -62.35 13.96 21.45 0.30 -62.05 16 23 Si 0.94 46.28 27.48 68.60 1.89 48.16 16 24 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.25 -11.33 6.52 99.48 0.65 -10.68 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 30 H 0.07 1.27 6.38 -2.39 -0.02 1.26 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 1.01 4.99 -2.39 -0.01 0.99 16 34 H 0.08 1.32 6.43 -2.39 -0.02 1.30 16 35 H 0.07 1.48 5.38 -2.39 -0.01 1.46 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 3.46 3.44 -2.39 -0.01 3.45 16 39 H 0.03 1.25 7.46 -2.38 -0.02 1.23 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.02 1.02 7.58 -2.39 -0.02 1.00 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.34 9.27 4.52 -89.69 -0.41 8.86 16 44 H 0.07 1.68 5.76 -2.38 -0.01 1.67 16 45 H 0.05 1.56 8.11 -2.38 -0.02 1.54 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.02 1.05 7.07 -2.39 -0.02 1.04 16 48 H 0.01 0.37 7.32 -2.39 -0.02 0.36 16 49 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -66.49 341.50 5.39 -61.11 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.44 Total: 20.97 kcal Atomic # 6 Polarization: -49.76 SS G_CDS: 3.83 Total: -45.93 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -0.77 Total: -84.30 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.89 Total: 48.16 kcal Total: -66.49 5.39 -61.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.041 kcal (2) G-P(sol) polarization free energy of solvation -66.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds