Wall clock time and date at job start Mon Mar 30 2020 08:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47117 * 2 1 4 4 C 1.53007 * 109.46957 * 120.00369 * 2 1 3 5 5 H 1.09001 * 109.46540 * 300.00172 * 4 2 1 6 6 C 1.53000 * 109.47269 * 59.99665 * 4 2 1 7 7 C 1.53000 * 109.46918 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.46829 * 299.99913 * 7 6 4 9 9 H 1.09003 * 109.46967 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47673 * 299.99982 * 8 7 6 11 11 C 1.53000 * 109.47300 * 60.00320 * 8 7 6 12 12 C 1.52989 * 109.47046 * 180.02562 * 4 2 1 13 13 H 1.08999 * 109.47507 * 59.99407 * 12 4 2 14 14 N 1.46904 * 109.47003 * 299.99287 * 12 4 2 15 15 C 1.46901 * 110.99670 * 135.23506 * 14 12 4 16 16 H 1.08996 * 109.47248 * 322.18377 * 15 14 12 17 17 C 1.53001 * 109.47203 * 82.18552 * 15 14 12 18 18 C 1.53005 * 109.47247 * 202.18617 * 15 14 12 19 19 C 1.50695 * 109.47042 * 64.99741 * 18 15 14 20 20 H 1.08005 * 120.00142 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00208 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99700 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00060 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47097 * 120.00154 * 23 21 19 26 26 H 1.48500 * 109.47233 * 239.99684 * 23 21 19 27 27 H 1.08992 * 109.47073 * 300.00119 * 1 2 3 28 28 H 1.09005 * 109.46748 * 60.00230 * 1 2 3 29 29 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47114 * 239.99816 * 2 1 3 31 31 H 1.09009 * 109.46931 * 179.97438 * 3 2 1 32 32 H 1.08990 * 109.47532 * 299.99755 * 3 2 1 33 33 H 1.09003 * 109.46852 * 60.00234 * 3 2 1 34 34 H 1.09003 * 109.46803 * 59.99973 * 6 4 2 35 35 H 1.09000 * 109.47072 * 300.00410 * 6 4 2 36 36 H 1.08991 * 109.47049 * 60.00449 * 7 6 4 37 37 H 1.09003 * 109.46918 * 180.02562 * 7 6 4 38 38 H 1.09006 * 109.46392 * 47.95250 * 10 8 7 39 39 H 1.08994 * 109.47419 * 167.95178 * 10 8 7 40 40 H 1.09003 * 109.47174 * 287.96056 * 10 8 7 41 41 H 1.09000 * 109.47072 * 179.97438 * 11 8 7 42 42 H 1.09003 * 109.46803 * 59.99971 * 11 8 7 43 43 H 1.00895 * 111.00099 * 11.28962 * 14 12 4 44 44 H 1.08999 * 109.46999 * 54.22601 * 17 15 14 45 45 H 1.09004 * 109.47147 * 174.21758 * 17 15 14 46 46 H 1.08994 * 109.47250 * 294.21902 * 17 15 14 47 47 H 1.09000 * 109.47244 * 185.00155 * 18 15 14 48 48 H 1.09004 * 109.47031 * 305.00349 * 18 15 14 49 49 H 0.97004 * 120.00178 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 1 1.6766 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 2.0394 -2.8849 2.4988 8 6 3.5693 -2.8849 2.4993 9 1 3.9323 -3.3991 3.3893 10 6 4.0799 -3.6064 1.2504 11 6 4.0794 -1.4425 2.4994 12 6 3.5699 -0.7208 1.2496 13 1 3.9329 0.3069 1.2498 14 7 4.0601 -1.4131 0.0502 15 6 5.1534 -0.6621 -0.5811 16 1 4.9473 0.4061 -0.5130 17 6 6.4679 -0.9746 0.1369 18 6 5.2672 -1.0667 -2.0523 19 6 4.0197 -0.6475 -2.7864 20 1 3.2253 -0.1426 -2.2568 21 6 3.8924 -0.9085 -4.1343 22 7 4.8594 -1.5237 -4.7791 23 14 2.3463 -0.3882 -5.0444 24 1 1.4171 0.2814 -4.0992 25 1 2.7069 0.5539 -6.1343 26 1 1.6862 -1.5857 -5.6236 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.8933 -2.6776 0.3592 35 1 0.4399 -2.1638 1.2492 36 1 1.6757 -2.3710 3.3885 37 1 1.6764 -3.9127 2.4985 38 1 3.5524 -3.2315 0.3732 39 1 5.1486 -3.4244 1.1370 40 1 3.9022 -4.6771 1.3511 41 1 5.1694 -1.4425 2.5002 42 1 3.7158 -0.9286 3.3892 43 1 3.3099 -1.5780 -0.6041 44 1 6.6228 -2.0533 0.1580 45 1 7.2934 -0.4995 -0.3932 46 1 6.4241 -0.5937 1.1572 47 1 6.1330 -0.5769 -2.4979 48 1 5.3847 -2.1480 -2.1237 49 1 4.7698 -1.7078 -5.7273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705953645.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:09 Heat of formation + Delta-G solvation = -31.876484 kcal Electronic energy + Delta-G solvation = -23297.318219 eV Core-core repulsion = 20450.898460 eV Total energy + Delta-G solvation = -2846.419759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00780 -35.55413 -35.25970 -32.61485 -30.69570 -30.19159 -27.91222 -27.30293 -26.83073 -25.75736 -23.05656 -22.25489 -21.43586 -19.58381 -19.17306 -18.00525 -16.36523 -16.05607 -15.16592 -14.44148 -14.42587 -14.30647 -13.59874 -13.30448 -13.09192 -13.04381 -12.89067 -12.30864 -12.07147 -11.98796 -11.82396 -11.59180 -11.53120 -11.38623 -11.20230 -11.04873 -10.94130 -10.80149 -10.62908 -10.56286 -10.41470 -10.31873 -10.15903 -10.10526 -9.93141 -9.61116 -9.39884 -8.99537 -8.97095 -8.37303 -7.25646 -6.00487 -4.02558 3.28615 3.37377 3.39266 4.44269 4.87614 4.93711 4.96661 5.20183 5.33502 5.38913 5.42540 5.47315 5.63788 5.73365 5.74445 5.83755 5.90747 5.92971 5.97094 6.03760 6.05927 6.13860 6.16340 6.21606 6.24582 6.27952 6.33382 6.40198 6.42698 6.43674 6.52174 6.58482 6.63798 6.67889 6.70850 6.77961 6.84802 6.88569 7.04860 7.06551 7.41464 7.63037 7.71456 8.01481 8.17234 8.38043 8.43102 9.04760 9.61409 11.10540 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.007986 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.933828 B = 3505.389418 C = 4286.250829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.144 4.144 4 C -0.087 4.087 5 H 0.063 0.937 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.079 4.079 9 H 0.049 0.951 10 C -0.135 4.135 11 C -0.100 4.100 12 C 0.089 3.911 13 H 0.049 0.951 14 N -0.664 5.664 15 C 0.085 3.915 16 H 0.026 0.974 17 C -0.135 4.135 18 C 0.021 3.979 19 C -0.519 4.519 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.882 3.118 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.285 1.285 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.017 0.983 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.354 0.646 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.035 0.965 47 H 0.017 0.983 48 H 0.024 0.976 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 0.579 13.565 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.201 4.201 4 C -0.106 4.106 5 H 0.082 0.918 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.098 4.098 9 H 0.067 0.933 10 C -0.192 4.192 11 C -0.139 4.139 12 C -0.021 4.021 13 H 0.067 0.933 14 N -0.300 5.300 15 C -0.024 4.024 16 H 0.044 0.956 17 C -0.193 4.193 18 C -0.016 4.016 19 C -0.558 4.558 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.710 3.290 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.178 0.822 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.043 0.957 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.897 0.108 13.717 14.566 hybrid contribution -1.276 1.087 -0.986 1.945 sum -6.173 1.195 12.732 14.200 Atomic orbital electron populations 1.21853 0.95891 1.01476 1.00947 1.21305 0.95260 0.96519 0.99184 1.21843 1.01635 0.95989 1.00680 1.21462 0.95682 0.95848 0.97596 0.91829 1.21660 0.99310 0.95300 0.99104 1.21512 0.96138 0.99499 0.97550 1.20931 0.94446 0.95931 0.98477 0.93290 1.22123 1.02209 0.95869 0.98975 1.21639 1.00358 0.95553 0.96307 1.21600 0.92473 0.95715 0.92358 0.93291 1.61225 1.13830 1.46491 1.08490 1.21724 0.90183 0.94167 0.96314 0.95591 1.21856 0.97563 1.01434 0.98488 1.19261 0.96926 0.97456 0.87961 1.21289 1.02942 1.37666 0.93860 0.92436 1.24968 0.96010 0.95239 0.97819 1.69970 1.32162 1.41608 1.09257 0.86693 0.83851 0.78349 0.80091 1.19651 1.21216 1.21079 0.93414 0.93122 0.92541 0.89365 0.92138 0.92994 0.93699 0.90568 0.92603 0.93183 0.92772 0.88578 0.92884 0.96411 0.92058 0.93543 0.82164 0.92631 0.93709 0.94593 0.96443 0.95715 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.84 37.16 0.33 -1.60 16 2 C -0.10 -1.57 2.32 -90.62 -0.21 -1.78 16 3 C -0.14 -2.17 8.84 37.15 0.33 -1.85 16 4 C -0.09 -1.20 1.52 -90.62 -0.14 -1.34 16 5 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 6 C -0.12 -1.56 4.48 -26.73 -0.12 -1.68 16 7 C -0.11 -1.37 5.45 -26.73 -0.15 -1.51 16 8 C -0.08 -1.07 3.19 -90.62 -0.29 -1.36 16 9 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 10 C -0.13 -2.06 7.75 37.16 0.29 -1.77 16 11 C -0.10 -1.38 5.26 -26.71 -0.14 -1.52 16 12 C 0.09 1.33 1.84 -67.69 -0.12 1.21 16 13 H 0.05 0.78 5.53 -51.93 -0.29 0.50 16 14 N -0.66 -11.57 2.30 -99.72 -0.23 -11.80 16 15 C 0.09 1.68 2.52 -67.71 -0.17 1.51 16 16 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 17 C -0.14 -2.38 9.08 37.16 0.34 -2.04 16 18 C 0.02 0.52 4.59 -27.88 -0.13 0.39 16 19 C -0.52 -13.60 8.13 -34.44 -0.28 -13.88 16 20 H 0.06 1.45 5.81 -52.48 -0.30 1.14 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 23 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 30 H 0.09 1.60 4.75 -51.93 -0.25 1.36 16 31 H 0.06 0.98 5.53 -51.92 -0.29 0.70 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.15 5.30 -51.93 -0.28 0.88 16 35 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.62 3.52 -51.93 -0.18 1.44 16 39 H 0.05 0.87 7.42 -51.93 -0.39 0.48 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.88 6.55 -51.93 -0.34 0.54 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.35 6.81 3.54 -39.29 -0.14 6.67 16 44 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.57 6.77 -51.93 -0.35 0.21 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -26.67 341.55 -8.76 -35.43 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.83 Total: 6.14 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -0.56 Total: -25.62 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.51 Total: -37.15 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.67 -8.76 -35.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953645.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.555 kcal (2) G-P(sol) polarization free energy of solvation -26.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds