Wall clock time and date at job start Mon Mar 30 2020 08:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47117 * 2 1 4 4 C 1.53007 * 109.46957 * 120.00369 * 2 1 3 5 5 H 1.09001 * 109.46540 * 300.00172 * 4 2 1 6 6 C 1.53000 * 109.47269 * 59.99665 * 4 2 1 7 7 C 1.53000 * 109.46918 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.46829 * 299.99913 * 7 6 4 9 9 H 1.09003 * 109.46967 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47673 * 299.99982 * 8 7 6 11 11 C 1.53000 * 109.47300 * 60.00320 * 8 7 6 12 12 C 1.52989 * 109.47046 * 180.02562 * 4 2 1 13 13 H 1.08999 * 109.47507 * 59.99407 * 12 4 2 14 14 N 1.46904 * 109.47003 * 299.99287 * 12 4 2 15 15 C 1.46901 * 110.99670 * 135.23506 * 14 12 4 16 16 H 1.08996 * 109.47248 * 322.18377 * 15 14 12 17 17 C 1.53001 * 109.47203 * 82.18552 * 15 14 12 18 18 C 1.53005 * 109.47247 * 202.18617 * 15 14 12 19 19 C 1.50695 * 109.47042 * 64.99741 * 18 15 14 20 20 H 1.08005 * 120.00142 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00208 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99700 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00060 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47097 * 120.00154 * 23 21 19 26 26 H 1.48500 * 109.47233 * 239.99684 * 23 21 19 27 27 H 1.08992 * 109.47073 * 300.00119 * 1 2 3 28 28 H 1.09005 * 109.46748 * 60.00230 * 1 2 3 29 29 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47114 * 239.99816 * 2 1 3 31 31 H 1.09009 * 109.46931 * 179.97438 * 3 2 1 32 32 H 1.08990 * 109.47532 * 299.99755 * 3 2 1 33 33 H 1.09003 * 109.46852 * 60.00234 * 3 2 1 34 34 H 1.09003 * 109.46803 * 59.99973 * 6 4 2 35 35 H 1.09000 * 109.47072 * 300.00410 * 6 4 2 36 36 H 1.08991 * 109.47049 * 60.00449 * 7 6 4 37 37 H 1.09003 * 109.46918 * 180.02562 * 7 6 4 38 38 H 1.09006 * 109.46392 * 47.95250 * 10 8 7 39 39 H 1.08994 * 109.47419 * 167.95178 * 10 8 7 40 40 H 1.09003 * 109.47174 * 287.96056 * 10 8 7 41 41 H 1.09000 * 109.47072 * 179.97438 * 11 8 7 42 42 H 1.09003 * 109.46803 * 59.99971 * 11 8 7 43 43 H 1.00895 * 111.00099 * 11.28962 * 14 12 4 44 44 H 1.08999 * 109.46999 * 54.22601 * 17 15 14 45 45 H 1.09004 * 109.47147 * 174.21758 * 17 15 14 46 46 H 1.08994 * 109.47250 * 294.21902 * 17 15 14 47 47 H 1.09000 * 109.47244 * 185.00155 * 18 15 14 48 48 H 1.09004 * 109.47031 * 305.00349 * 18 15 14 49 49 H 0.97004 * 120.00178 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 1 1.6766 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 2.0394 -2.8849 2.4988 8 6 3.5693 -2.8849 2.4993 9 1 3.9323 -3.3991 3.3893 10 6 4.0799 -3.6064 1.2504 11 6 4.0794 -1.4425 2.4994 12 6 3.5699 -0.7208 1.2496 13 1 3.9329 0.3069 1.2498 14 7 4.0601 -1.4131 0.0502 15 6 5.1534 -0.6621 -0.5811 16 1 4.9473 0.4061 -0.5130 17 6 6.4679 -0.9746 0.1369 18 6 5.2672 -1.0667 -2.0523 19 6 4.0197 -0.6475 -2.7864 20 1 3.2253 -0.1426 -2.2568 21 6 3.8924 -0.9085 -4.1343 22 7 4.8594 -1.5237 -4.7791 23 14 2.3463 -0.3882 -5.0444 24 1 1.4171 0.2814 -4.0992 25 1 2.7069 0.5539 -6.1343 26 1 1.6862 -1.5857 -5.6236 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.8933 -2.6776 0.3592 35 1 0.4399 -2.1638 1.2492 36 1 1.6757 -2.3710 3.3885 37 1 1.6764 -3.9127 2.4985 38 1 3.5524 -3.2315 0.3732 39 1 5.1486 -3.4244 1.1370 40 1 3.9022 -4.6771 1.3511 41 1 5.1694 -1.4425 2.5002 42 1 3.7158 -0.9286 3.3892 43 1 3.3099 -1.5780 -0.6041 44 1 6.6228 -2.0533 0.1580 45 1 7.2934 -0.4995 -0.3932 46 1 6.4241 -0.5937 1.1572 47 1 6.1330 -0.5769 -2.4979 48 1 5.3847 -2.1480 -2.1237 49 1 4.7698 -1.7078 -5.7273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705953645.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:08 Heat of formation + Delta-G solvation = -43.498987 kcal Electronic energy + Delta-G solvation = -23297.822209 eV Core-core repulsion = 20450.898460 eV Total energy + Delta-G solvation = -2846.923748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20680 -37.13825 -36.40104 -34.59329 -32.13490 -31.31004 -29.28137 -29.13823 -27.97867 -26.92842 -25.01530 -23.37358 -22.62434 -21.19580 -20.37001 -19.16924 -18.44639 -17.39016 -16.49225 -16.30208 -15.83458 -15.51611 -14.84273 -14.68617 -14.47068 -14.15597 -14.11763 -13.85974 -13.60139 -13.31770 -13.17710 -13.03308 -12.86198 -12.81035 -12.75274 -12.58202 -12.33674 -12.30647 -12.11409 -12.05709 -11.89658 -11.62071 -11.47419 -11.34529 -11.13829 -11.00793 -10.81180 -10.66386 -10.53668 -10.44335 -8.66885 -8.14933 -6.22652 1.36890 1.39115 1.49750 2.41400 3.17882 3.58280 3.80945 3.82759 4.04648 4.23372 4.32549 4.34768 4.40789 4.51777 4.59880 4.65655 4.68357 4.73995 4.78315 4.81634 4.82642 4.84645 4.97836 5.01744 5.06505 5.09562 5.14589 5.21209 5.23079 5.25952 5.29553 5.34844 5.37528 5.39651 5.48896 5.52781 5.54232 5.56688 5.62795 5.70272 5.74805 5.80342 5.92408 6.16010 6.29842 6.64698 6.85485 6.94323 7.45342 8.97208 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.007986 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.933828 B = 3505.389418 C = 4286.250829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.141 4.141 4 C -0.078 4.078 5 H 0.084 0.916 6 C -0.115 4.115 7 C -0.104 4.104 8 C -0.077 4.077 9 H 0.062 0.938 10 C -0.132 4.132 11 C -0.096 4.096 12 C 0.087 3.913 13 H 0.042 0.958 14 N -0.658 5.658 15 C 0.097 3.903 16 H 0.018 0.982 17 C -0.126 4.126 18 C 0.030 3.970 19 C -0.518 4.518 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.947 3.053 24 H -0.259 1.259 25 H -0.286 1.286 26 H -0.282 1.282 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.021 0.979 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.343 0.657 44 H 0.050 0.950 45 H 0.041 0.959 46 H 0.059 0.941 47 H -0.014 1.014 48 H -0.005 1.005 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 1.166 16.003 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.198 4.198 4 C -0.097 4.097 5 H 0.102 0.898 6 C -0.152 4.152 7 C -0.142 4.142 8 C -0.095 4.095 9 H 0.081 0.919 10 C -0.189 4.189 11 C -0.135 4.135 12 C -0.023 4.023 13 H 0.060 0.940 14 N -0.293 5.293 15 C -0.013 4.013 16 H 0.036 0.964 17 C -0.184 4.184 18 C -0.007 4.007 19 C -0.557 4.557 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.573 5.573 23 Si 0.773 3.227 24 H -0.183 1.183 25 H -0.212 1.212 26 H -0.208 1.208 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.004 0.996 48 H 0.013 0.987 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.898 0.702 16.180 17.603 hybrid contribution -0.620 0.893 -1.736 2.048 sum -7.518 1.595 14.444 16.361 Atomic orbital electron populations 1.21817 0.94255 1.02078 1.01606 1.21251 0.96633 0.96086 0.98282 1.21813 1.00433 0.96268 1.01333 1.21401 0.94431 0.96276 0.97614 0.89786 1.21633 1.00108 0.94723 0.98728 1.21480 0.95049 1.00030 0.97613 1.20915 0.95361 0.95504 0.97722 0.91919 1.22042 1.00911 0.96412 0.99520 1.21612 0.99945 0.95762 0.96136 1.21695 0.93679 0.95254 0.91623 0.93960 1.61306 1.12985 1.46263 1.08725 1.21482 0.92400 0.93750 0.93622 0.96392 1.21749 0.96065 1.01165 0.99430 1.19110 0.95269 0.95037 0.91324 1.21637 1.03386 1.36592 0.94041 0.91478 1.25804 0.99010 0.95489 0.98985 1.70108 1.34353 1.43341 1.09533 0.85658 0.80328 0.77921 0.78785 1.18253 1.21200 1.20841 0.91348 0.93865 0.91988 0.93054 0.93933 0.94058 0.91300 0.92936 0.91219 0.91271 0.92172 0.90388 0.94556 0.96028 0.92827 0.91322 0.83406 0.93121 0.93990 0.92231 0.99569 0.98704 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.84 71.98 0.64 -2.75 16 2 C -0.10 -2.97 2.32 -10.79 -0.03 -3.00 16 3 C -0.14 -4.05 8.84 71.98 0.64 -3.41 16 4 C -0.08 -1.97 1.52 -10.79 -0.02 -1.98 16 5 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.11 -2.79 4.48 30.59 0.14 -2.65 16 7 C -0.10 -2.25 5.45 30.59 0.17 -2.08 16 8 C -0.08 -1.86 3.19 -10.79 -0.03 -1.89 16 9 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 10 C -0.13 -3.94 7.75 71.98 0.56 -3.39 16 11 C -0.10 -2.39 5.26 30.61 0.16 -2.22 16 12 C 0.09 2.48 1.84 44.93 0.08 2.56 16 13 H 0.04 1.28 5.53 -2.39 -0.01 1.27 16 14 N -0.66 -23.09 2.30 -469.39 -1.08 -24.17 16 15 C 0.10 3.92 2.52 44.92 0.11 4.03 16 16 H 0.02 0.76 6.56 -2.39 -0.02 0.74 16 17 C -0.13 -4.46 9.08 71.98 0.65 -3.80 16 18 C 0.03 1.55 4.59 29.85 0.14 1.68 16 19 C -0.52 -27.98 8.13 25.60 0.21 -27.77 16 20 H 0.07 3.44 5.81 -2.91 -0.02 3.43 16 21 C 0.00 0.26 5.46 84.66 0.46 0.73 16 22 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 23 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 1.41 6.43 -2.39 -0.02 1.40 16 30 H 0.05 1.86 4.75 -2.39 -0.01 1.85 16 31 H 0.04 1.35 5.53 -2.38 -0.01 1.34 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.55 5.30 -2.39 -0.01 1.54 16 35 H 0.07 1.51 6.43 -2.39 -0.02 1.49 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 2.65 3.52 -2.38 -0.01 2.64 16 39 H 0.04 1.18 7.42 -2.39 -0.02 1.16 16 40 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.05 1.42 6.55 -2.39 -0.02 1.40 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.34 13.53 3.54 -89.70 -0.32 13.21 16 44 H 0.05 1.82 7.53 -2.39 -0.02 1.81 16 45 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.06 1.81 6.77 -2.39 -0.02 1.80 16 47 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -58.98 341.55 5.70 -53.28 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.59 Total: 27.05 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 3.88 Total: -45.95 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -0.79 Total: -80.40 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -58.98 5.70 -53.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953645.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.786 kcal (2) G-P(sol) polarization free energy of solvation -58.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds