Wall clock time and date at job start Mon Mar 30 2020 08:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 C 1.52996 * 109.47026 * 120.00295 * 2 1 3 5 5 H 1.09001 * 109.47298 * 185.21609 * 4 2 1 6 6 C 1.53007 * 109.46867 * 305.20848 * 4 2 1 7 7 C 1.53006 * 109.46892 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47562 * 300.00597 * 7 6 4 9 9 H 1.08997 * 109.47316 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47017 * 299.99696 * 8 7 6 11 11 C 1.53007 * 109.47505 * 59.99778 * 8 7 6 12 12 C 1.52995 * 109.47274 * 65.21024 * 4 2 1 13 13 H 1.09001 * 109.47345 * 299.99719 * 12 4 2 14 14 N 1.46902 * 109.47046 * 60.00344 * 12 4 2 15 15 C 1.46902 * 110.99563 * 214.31448 * 14 12 4 16 16 H 1.08993 * 109.47625 * 28.71236 * 15 14 12 17 17 C 1.53001 * 109.47087 * 268.71156 * 15 14 12 18 18 C 1.53005 * 109.46944 * 148.71290 * 15 14 12 19 19 C 1.50701 * 109.46884 * 294.99265 * 18 15 14 20 20 H 1.07996 * 119.99875 * 4.53370 * 19 18 15 21 21 C 1.37878 * 119.99504 * 184.53475 * 19 18 15 22 22 N 1.31513 * 119.99638 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00470 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47215 * 90.00002 * 23 21 19 25 25 H 1.48496 * 109.47548 * 210.00563 * 23 21 19 26 26 H 1.48506 * 109.47082 * 330.00457 * 23 21 19 27 27 H 1.08997 * 109.47107 * 300.00085 * 1 2 3 28 28 H 1.08997 * 109.46898 * 59.99923 * 1 2 3 29 29 H 1.09004 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47107 * 239.99915 * 2 1 3 31 31 H 1.09001 * 109.47316 * 182.10851 * 3 2 1 32 32 H 1.09002 * 109.47412 * 302.10822 * 3 2 1 33 33 H 1.09006 * 109.47089 * 62.10942 * 3 2 1 34 34 H 1.08995 * 109.47615 * 300.00331 * 6 4 2 35 35 H 1.09002 * 109.46737 * 60.00813 * 6 4 2 36 36 H 1.09000 * 109.47028 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46568 * 60.00357 * 7 6 4 38 38 H 1.09005 * 109.47495 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.47152 * 300.00132 * 10 8 7 40 40 H 1.09010 * 109.47031 * 59.99939 * 10 8 7 41 41 H 1.08997 * 109.47351 * 180.02562 * 11 8 7 42 42 H 1.09002 * 109.46737 * 59.99667 * 11 8 7 43 43 H 1.00896 * 110.99561 * 338.26285 * 14 12 4 44 44 H 1.08999 * 109.47520 * 187.42408 * 17 15 14 45 45 H 1.09008 * 109.46882 * 307.42097 * 17 15 14 46 46 H 1.08998 * 109.47521 * 67.41829 * 17 15 14 47 47 H 1.08996 * 109.47058 * 54.99085 * 18 15 14 48 48 H 1.09002 * 109.47004 * 174.98868 * 18 15 14 49 49 H 0.97000 * 120.00346 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1261 -0.6411 1.2972 6 6 1.4259 -0.0796 2.4950 7 6 1.9354 -0.8014 3.7442 8 6 1.5348 -2.2765 3.6801 9 1 1.8973 -2.7905 4.5703 10 6 0.0104 -2.3885 3.6126 11 6 2.1489 -2.9182 2.4343 12 6 1.6398 -2.1966 1.1854 13 1 0.5538 -2.2768 1.1375 14 7 2.2296 -2.8126 -0.0108 15 6 1.3363 -3.8356 -0.5708 16 1 0.3022 -3.5820 -0.3378 17 6 1.6766 -5.1979 0.0370 18 6 1.5173 -3.8949 -2.0889 19 6 1.0654 -2.5935 -2.6998 20 1 0.7561 -1.7771 -2.0640 21 6 1.0469 -2.4452 -4.0705 22 7 0.6521 -1.3096 -4.6037 23 14 1.5826 -3.8569 -5.1702 24 1 0.4075 -4.7047 -5.4950 25 1 2.1636 -3.3145 -6.4245 26 1 2.6026 -4.6741 -4.4651 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1294 1.4428 -0.0378 32 1 1.6462 1.9672 -0.8705 33 1 1.7079 1.9453 0.9083 34 1 1.7109 0.9714 2.5405 35 1 0.3399 -0.1599 2.4471 36 1 1.4975 -0.3445 4.6318 37 1 3.0214 -0.7216 3.7923 38 1 -0.2751 -3.4395 3.5664 39 1 -0.4272 -1.9314 4.5001 40 1 -0.3527 -1.8743 2.7226 41 1 1.8631 -3.9690 2.3884 42 1 3.2350 -2.8383 2.4824 43 1 2.4576 -2.1140 -0.7021 44 1 1.1068 -5.9754 -0.4718 45 1 2.7427 -5.3924 -0.0813 46 1 1.4230 -5.1964 1.0971 47 1 2.5688 -4.0605 -2.3233 48 1 0.9216 -4.7128 -2.4942 49 1 0.6394 -1.2050 -5.5679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705953646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:11 Heat of formation + Delta-G solvation = -42.245971 kcal Electronic energy + Delta-G solvation = -22900.610092 eV Core-core repulsion = 20053.740678 eV Total energy + Delta-G solvation = -2846.869413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88454 -36.06808 -35.21465 -32.63944 -31.03594 -30.07696 -27.87327 -27.37565 -26.82465 -26.16140 -23.07677 -22.69201 -21.20721 -19.43890 -19.18054 -17.92705 -16.81201 -15.87214 -14.98500 -14.60287 -14.54060 -14.26009 -13.96867 -13.67983 -13.30800 -13.00903 -12.65764 -12.46850 -12.34201 -12.13813 -11.87944 -11.83634 -11.53432 -11.47696 -11.44307 -11.29833 -10.94743 -10.81665 -10.76834 -10.56968 -10.52459 -10.38626 -10.24408 -9.86336 -9.79280 -9.61025 -9.48720 -9.25021 -9.01970 -8.53597 -7.56967 -6.04794 -4.02564 3.31003 3.39256 3.44343 4.46063 4.73100 4.88209 4.92293 5.15509 5.27893 5.32613 5.37630 5.41093 5.57903 5.63488 5.71453 5.76442 5.81850 5.85804 5.91175 5.93670 5.99922 6.03965 6.13003 6.13897 6.14837 6.22268 6.25518 6.28091 6.36332 6.36947 6.42974 6.47704 6.52300 6.54500 6.63107 6.73278 6.74086 6.82820 6.89938 6.93027 6.95129 7.22896 7.36947 7.79164 8.04804 8.37332 8.52080 8.99487 9.58785 11.07505 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.006629 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.836289 B = 4222.708453 C = 5156.460519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.084 4.084 5 H 0.069 0.931 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.091 4.091 9 H 0.062 0.938 10 C -0.151 4.151 11 C -0.102 4.102 12 C 0.093 3.907 13 H 0.050 0.950 14 N -0.683 5.683 15 C 0.098 3.902 16 H 0.036 0.964 17 C -0.139 4.139 18 C -0.020 4.020 19 C -0.525 4.525 20 H 0.079 0.921 21 C 0.071 3.929 22 N -0.900 5.900 23 Si 0.877 3.123 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.266 1.266 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.357 0.643 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.041 0.959 47 H 0.021 0.979 48 H 0.015 0.985 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 0.833 15.127 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.200 4.200 4 C -0.103 4.103 5 H 0.088 0.912 6 C -0.154 4.154 7 C -0.150 4.150 8 C -0.110 4.110 9 H 0.080 0.920 10 C -0.208 4.208 11 C -0.141 4.141 12 C -0.017 4.017 13 H 0.068 0.932 14 N -0.319 5.319 15 C -0.012 4.012 16 H 0.054 0.946 17 C -0.197 4.197 18 C -0.058 4.058 19 C -0.563 4.563 20 H 0.097 0.903 21 C -0.131 4.131 22 N -0.539 5.539 23 Si 0.704 3.296 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.190 1.190 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.182 0.818 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.033 0.967 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.829 0.479 15.275 15.391 hybrid contribution -0.478 -0.163 -1.182 1.285 sum 1.351 0.316 14.093 14.161 Atomic orbital electron populations 1.21842 0.95506 1.01780 1.00758 1.21238 0.96093 0.95905 0.98632 1.21825 1.00462 0.96611 1.01081 1.21371 1.00109 0.94470 0.94322 0.91235 1.21701 1.00955 0.98804 0.93906 1.21561 1.00552 0.95245 0.97663 1.21111 0.95747 0.95920 0.98240 0.91982 1.21943 0.95737 1.01415 1.01691 1.21655 1.00217 0.99178 0.93006 1.21606 0.97084 0.91782 0.91252 0.93186 1.60630 1.44117 1.18078 1.09086 1.21454 0.93363 0.90767 0.95566 0.94619 1.21933 1.01337 0.97257 0.99212 1.19832 0.97107 0.97685 0.91182 1.21214 1.44224 0.98674 0.92164 0.90258 1.24980 0.94571 0.95368 0.98169 1.69909 1.47832 1.24696 1.11441 0.86828 0.79420 0.83146 0.80172 1.20536 1.21588 1.19018 0.93612 0.92636 0.92645 0.89166 0.93212 0.92793 0.93291 0.92186 0.91415 0.92729 0.92305 0.93095 0.93407 0.91828 0.92048 0.92022 0.81845 0.93663 0.92736 0.93965 0.96046 0.96677 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.14 37.16 0.30 -2.07 16 2 C -0.10 -1.64 2.55 -90.62 -0.23 -1.87 16 3 C -0.14 -2.08 9.00 37.16 0.33 -1.74 16 4 C -0.08 -1.22 1.57 -90.62 -0.14 -1.36 16 5 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.12 -1.43 4.20 -26.72 -0.11 -1.55 16 7 C -0.11 -1.26 5.45 -26.73 -0.15 -1.41 16 8 C -0.09 -1.07 3.19 -90.62 -0.29 -1.36 16 9 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 10 C -0.15 -1.75 8.50 37.16 0.32 -1.43 16 11 C -0.10 -1.42 4.94 -26.75 -0.13 -1.55 16 12 C 0.09 1.46 1.49 -67.73 -0.10 1.35 16 13 H 0.05 0.85 3.91 -51.93 -0.20 0.65 16 14 N -0.68 -12.67 6.17 -99.76 -0.62 -13.28 16 15 C 0.10 1.95 2.61 -67.71 -0.18 1.77 16 16 H 0.04 0.75 7.22 -51.93 -0.38 0.37 16 17 C -0.14 -2.39 9.26 37.16 0.34 -2.05 16 18 C -0.02 -0.48 3.59 -27.88 -0.10 -0.58 16 19 C -0.52 -14.08 8.72 -34.44 -0.30 -14.38 16 20 H 0.08 2.21 6.17 -52.49 -0.32 1.89 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 23 Si 0.88 21.59 27.38 -169.99 -4.65 16.94 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.27 -6.38 6.67 56.52 0.38 -6.00 16 27 H 0.04 0.65 6.34 -51.93 -0.33 0.32 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.00 6.57 -51.93 -0.34 0.66 16 30 H 0.09 1.81 4.89 -51.93 -0.25 1.56 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.62 6.48 -51.93 -0.34 0.29 16 34 H 0.06 0.71 6.53 -51.93 -0.34 0.37 16 35 H 0.07 0.86 4.63 -51.93 -0.24 0.62 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.81 4.81 -51.92 -0.25 0.56 16 41 H 0.06 0.88 5.94 -51.93 -0.31 0.57 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.36 7.35 4.57 -39.29 -0.18 7.17 16 44 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 46 H 0.04 0.65 6.11 -51.93 -0.32 0.34 16 47 H 0.02 0.52 7.51 -51.93 -0.39 0.13 16 48 H 0.01 0.36 7.32 -51.93 -0.38 -0.02 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -27.48 342.07 -8.67 -36.15 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.80 Total: 7.38 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -0.53 Total: -26.32 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.16 Total: -39.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.65 Total: 16.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.48 -8.67 -36.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.097 kcal (2) G-P(sol) polarization free energy of solvation -27.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds