Wall clock time and date at job start Mon Mar 30 2020 08:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 C 1.52996 * 109.47026 * 120.00295 * 2 1 3 5 5 H 1.09001 * 109.47298 * 185.21609 * 4 2 1 6 6 C 1.53007 * 109.46867 * 305.20848 * 4 2 1 7 7 C 1.53006 * 109.46892 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47562 * 300.00597 * 7 6 4 9 9 H 1.08997 * 109.47316 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47017 * 299.99696 * 8 7 6 11 11 C 1.53007 * 109.47505 * 59.99778 * 8 7 6 12 12 C 1.52995 * 109.47274 * 65.21024 * 4 2 1 13 13 H 1.09001 * 109.47345 * 299.99719 * 12 4 2 14 14 N 1.46902 * 109.47046 * 60.00344 * 12 4 2 15 15 C 1.46902 * 110.99563 * 214.31448 * 14 12 4 16 16 H 1.08993 * 109.47625 * 28.71236 * 15 14 12 17 17 C 1.53001 * 109.47087 * 268.71156 * 15 14 12 18 18 C 1.53005 * 109.46944 * 148.71290 * 15 14 12 19 19 C 1.50701 * 109.46884 * 294.99265 * 18 15 14 20 20 H 1.07996 * 119.99875 * 4.53370 * 19 18 15 21 21 C 1.37878 * 119.99504 * 184.53475 * 19 18 15 22 22 N 1.31513 * 119.99638 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00470 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47215 * 90.00002 * 23 21 19 25 25 H 1.48496 * 109.47548 * 210.00563 * 23 21 19 26 26 H 1.48506 * 109.47082 * 330.00457 * 23 21 19 27 27 H 1.08997 * 109.47107 * 300.00085 * 1 2 3 28 28 H 1.08997 * 109.46898 * 59.99923 * 1 2 3 29 29 H 1.09004 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47107 * 239.99915 * 2 1 3 31 31 H 1.09001 * 109.47316 * 182.10851 * 3 2 1 32 32 H 1.09002 * 109.47412 * 302.10822 * 3 2 1 33 33 H 1.09006 * 109.47089 * 62.10942 * 3 2 1 34 34 H 1.08995 * 109.47615 * 300.00331 * 6 4 2 35 35 H 1.09002 * 109.46737 * 60.00813 * 6 4 2 36 36 H 1.09000 * 109.47028 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46568 * 60.00357 * 7 6 4 38 38 H 1.09005 * 109.47495 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.47152 * 300.00132 * 10 8 7 40 40 H 1.09010 * 109.47031 * 59.99939 * 10 8 7 41 41 H 1.08997 * 109.47351 * 180.02562 * 11 8 7 42 42 H 1.09002 * 109.46737 * 59.99667 * 11 8 7 43 43 H 1.00896 * 110.99561 * 338.26285 * 14 12 4 44 44 H 1.08999 * 109.47520 * 187.42408 * 17 15 14 45 45 H 1.09008 * 109.46882 * 307.42097 * 17 15 14 46 46 H 1.08998 * 109.47521 * 67.41829 * 17 15 14 47 47 H 1.08996 * 109.47058 * 54.99085 * 18 15 14 48 48 H 1.09002 * 109.47004 * 174.98868 * 18 15 14 49 49 H 0.97000 * 120.00346 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1261 -0.6411 1.2972 6 6 1.4259 -0.0796 2.4950 7 6 1.9354 -0.8014 3.7442 8 6 1.5348 -2.2765 3.6801 9 1 1.8973 -2.7905 4.5703 10 6 0.0104 -2.3885 3.6126 11 6 2.1489 -2.9182 2.4343 12 6 1.6398 -2.1966 1.1854 13 1 0.5538 -2.2768 1.1375 14 7 2.2296 -2.8126 -0.0108 15 6 1.3363 -3.8356 -0.5708 16 1 0.3022 -3.5820 -0.3378 17 6 1.6766 -5.1979 0.0370 18 6 1.5173 -3.8949 -2.0889 19 6 1.0654 -2.5935 -2.6998 20 1 0.7561 -1.7771 -2.0640 21 6 1.0469 -2.4452 -4.0705 22 7 0.6521 -1.3096 -4.6037 23 14 1.5826 -3.8569 -5.1702 24 1 0.4075 -4.7047 -5.4950 25 1 2.1636 -3.3145 -6.4245 26 1 2.6026 -4.6741 -4.4651 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1294 1.4428 -0.0378 32 1 1.6462 1.9672 -0.8705 33 1 1.7079 1.9453 0.9083 34 1 1.7109 0.9714 2.5405 35 1 0.3399 -0.1599 2.4471 36 1 1.4975 -0.3445 4.6318 37 1 3.0214 -0.7216 3.7923 38 1 -0.2751 -3.4395 3.5664 39 1 -0.4272 -1.9314 4.5001 40 1 -0.3527 -1.8743 2.7226 41 1 1.8631 -3.9690 2.3884 42 1 3.2350 -2.8383 2.4824 43 1 2.4576 -2.1140 -0.7021 44 1 1.1068 -5.9754 -0.4718 45 1 2.7427 -5.3924 -0.0813 46 1 1.4230 -5.1964 1.0971 47 1 2.5688 -4.0605 -2.3233 48 1 0.9216 -4.7128 -2.4942 49 1 0.6394 -1.2050 -5.5679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705953646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:10 Heat of formation + Delta-G solvation = -56.876661 kcal Electronic energy + Delta-G solvation = -22901.244526 eV Core-core repulsion = 20053.740678 eV Total energy + Delta-G solvation = -2847.503848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08359 -37.57255 -36.42875 -34.65593 -32.57355 -31.14331 -29.67741 -28.68047 -28.12812 -27.22609 -24.58510 -24.21226 -22.45337 -21.07745 -20.36128 -19.09652 -18.90053 -17.14890 -16.49235 -16.27360 -15.89134 -15.60138 -15.16717 -14.98700 -14.69250 -14.36693 -14.23410 -13.91997 -13.65726 -13.53621 -13.33310 -13.21338 -13.05231 -12.83855 -12.72076 -12.60180 -12.44850 -12.17253 -12.12811 -11.94393 -11.78190 -11.67570 -11.54520 -11.48304 -11.36517 -11.19256 -10.87989 -10.72379 -10.67010 -10.49616 -9.06785 -8.23528 -6.24835 1.33795 1.36836 1.47772 2.38101 3.09780 3.45764 3.78103 3.82404 3.97227 4.17957 4.24739 4.25785 4.29886 4.47780 4.52147 4.55706 4.61246 4.64608 4.66876 4.72899 4.76683 4.82316 4.88069 4.94323 4.97032 5.02427 5.06559 5.09112 5.10700 5.17495 5.19206 5.25135 5.27937 5.29826 5.36034 5.39346 5.43458 5.49845 5.53641 5.58280 5.61881 5.67975 5.72386 5.75148 6.34421 6.54384 6.73630 6.83994 7.38949 8.91280 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.006629 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.836289 B = 4222.708453 C = 5156.460519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.075 4.075 5 H 0.067 0.933 6 C -0.112 4.112 7 C -0.109 4.109 8 C -0.087 4.087 9 H 0.080 0.920 10 C -0.150 4.150 11 C -0.097 4.097 12 C 0.093 3.907 13 H 0.036 0.964 14 N -0.684 5.684 15 C 0.103 3.897 16 H 0.019 0.981 17 C -0.130 4.130 18 C -0.017 4.017 19 C -0.521 4.521 20 H 0.056 0.944 21 C 0.013 3.987 22 N -0.944 5.944 23 Si 0.937 3.063 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.253 1.253 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.343 0.657 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.016 0.984 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 0.063 17.537 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 C -0.195 4.195 4 C -0.094 4.094 5 H 0.086 0.914 6 C -0.149 4.149 7 C -0.146 4.146 8 C -0.106 4.106 9 H 0.098 0.902 10 C -0.207 4.207 11 C -0.135 4.135 12 C -0.016 4.016 13 H 0.054 0.946 14 N -0.318 5.318 15 C -0.007 4.007 16 H 0.037 0.963 17 C -0.188 4.188 18 C -0.055 4.055 19 C -0.559 4.559 20 H 0.074 0.926 21 C -0.184 4.184 22 N -0.585 5.585 23 Si 0.763 3.237 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.177 1.177 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.164 0.836 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.511 -0.312 17.712 17.892 hybrid contribution -0.726 0.128 -1.908 2.046 sum 1.785 -0.183 15.804 15.906 Atomic orbital electron populations 1.21749 0.95980 1.00354 1.00829 1.21144 0.95588 0.97019 0.97917 1.21781 1.00797 0.95171 1.01714 1.21289 0.99969 0.93602 0.94523 0.91415 1.21678 1.00610 0.99489 0.93170 1.21549 1.00969 0.94570 0.97530 1.21106 0.95585 0.96413 0.97506 0.90198 1.21926 0.95750 1.01286 1.01720 1.21596 1.00114 0.98822 0.92942 1.21682 0.96206 0.92846 0.90898 0.94578 1.60778 1.43903 1.17738 1.09382 1.21361 0.92842 0.92970 0.93530 0.96341 1.21833 1.01525 0.95251 1.00202 1.19791 0.96381 0.95634 0.93675 1.21509 1.42814 0.99513 0.92076 0.92623 1.25797 0.95052 0.97751 0.99841 1.70050 1.49884 1.26865 1.11696 0.85848 0.79415 0.80214 0.78257 1.19800 1.21470 1.17722 0.90687 0.95191 0.94807 0.93661 0.92559 0.94222 0.90700 0.90884 0.91670 0.90653 0.91817 0.93305 0.91648 0.93481 0.92526 0.92222 0.83568 0.92847 0.92562 0.92137 0.96478 0.96540 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.14 71.99 0.59 -4.01 16 2 C -0.10 -3.31 2.55 -10.79 -0.03 -3.34 16 3 C -0.14 -3.98 9.00 71.98 0.65 -3.33 16 4 C -0.07 -2.13 1.57 -10.79 -0.02 -2.15 16 5 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 6 C -0.11 -2.49 4.20 30.60 0.13 -2.36 16 7 C -0.11 -2.05 5.45 30.59 0.17 -1.88 16 8 C -0.09 -1.78 3.19 -10.79 -0.03 -1.81 16 9 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 10 C -0.15 -3.11 8.50 71.98 0.61 -2.50 16 11 C -0.10 -2.50 4.94 30.58 0.15 -2.35 16 12 C 0.09 2.91 1.49 44.90 0.07 2.97 16 13 H 0.04 1.25 3.91 -2.39 -0.01 1.24 16 14 N -0.68 -25.74 6.17 -469.53 -2.90 -28.64 16 15 C 0.10 4.12 2.61 44.92 0.12 4.24 16 16 H 0.02 0.80 7.22 -2.39 -0.02 0.78 16 17 C -0.13 -4.27 9.26 71.98 0.67 -3.60 16 18 C -0.02 -0.81 3.59 29.85 0.11 -0.70 16 19 C -0.52 -28.98 8.72 25.60 0.22 -28.76 16 20 H 0.06 3.30 6.17 -2.91 -0.02 3.28 16 21 C 0.01 0.73 5.47 84.65 0.46 1.20 16 22 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 23 Si 0.94 44.95 27.38 68.60 1.88 46.82 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 26 H -0.25 -11.54 6.67 99.48 0.66 -10.88 16 27 H 0.07 2.12 6.34 -2.39 -0.02 2.10 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 1.29 6.57 -2.38 -0.02 1.27 16 30 H 0.05 1.95 4.89 -2.39 -0.01 1.94 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.76 6.48 -2.38 -0.02 1.75 16 34 H 0.07 1.47 6.53 -2.39 -0.02 1.45 16 35 H 0.06 1.51 4.63 -2.39 -0.01 1.49 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.13 4.81 -2.38 -0.01 1.12 16 41 H 0.06 1.51 5.94 -2.39 -0.01 1.50 16 42 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.34 14.72 4.57 -89.70 -0.41 14.31 16 44 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 45 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.06 1.76 6.11 -2.39 -0.01 1.74 16 47 H 0.02 0.82 7.51 -2.39 -0.02 0.80 16 48 H 0.02 0.77 7.32 -2.39 -0.02 0.75 16 49 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -60.96 342.07 3.60 -57.36 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.46 Total: 30.84 kcal Atomic # 6 Polarization: -52.25 SS G_CDS: 3.86 Total: -48.39 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.60 Total: -86.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.82 kcal Total: -60.96 3.60 -57.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705953646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.485 kcal (2) G-P(sol) polarization free energy of solvation -60.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds