Wall clock time and date at job start Mon Mar 30 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47282 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47166 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47166 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47282 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47042 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47042 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47105 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.47058 * 179.97438 * 10 9 8 12 12 C 1.36935 * 119.99937 * 270.00095 * 11 10 9 13 13 H 1.08003 * 119.99855 * 144.92770 * 12 11 10 14 14 C 1.38814 * 120.00273 * 324.92932 * 12 11 10 15 15 N 1.31620 * 119.99838 * 337.93463 * 14 12 11 16 16 Si 1.86801 * 120.00091 * 157.93681 * 14 12 11 17 17 H 1.48501 * 109.46754 * 89.99914 * 16 14 12 18 18 H 1.48495 * 109.46949 * 209.99670 * 16 14 12 19 19 H 1.48495 * 109.47225 * 330.00128 * 16 14 12 20 20 C 1.46494 * 119.99631 * 90.00309 * 11 10 9 21 21 C 1.53008 * 117.49603 * 183.23516 * 20 11 10 22 22 C 1.53005 * 117.50060 * 114.58020 * 20 11 10 23 23 H 1.08996 * 109.47001 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47144 * 299.99895 * 1 2 3 25 25 H 1.09002 * 109.47055 * 60.00201 * 1 2 3 26 26 H 1.09004 * 109.46958 * 240.00433 * 2 1 3 27 27 H 1.09002 * 109.47055 * 119.99799 * 2 1 3 28 28 H 1.09002 * 109.46733 * 59.99631 * 3 2 1 29 29 H 1.09008 * 109.47108 * 300.00235 * 3 2 1 30 30 H 1.08999 * 109.46694 * 59.99908 * 4 3 2 31 31 H 1.09002 * 109.46902 * 299.99852 * 4 3 2 32 32 H 1.08992 * 109.47360 * 59.99907 * 5 4 3 33 33 H 1.09002 * 109.46853 * 299.99593 * 5 4 3 34 34 H 1.09009 * 109.47208 * 59.99711 * 6 5 4 35 35 H 1.09002 * 109.47605 * 299.99819 * 6 5 4 36 36 H 1.08992 * 109.47065 * 60.00016 * 7 6 5 37 37 H 1.09002 * 109.47031 * 299.99773 * 7 6 5 38 38 H 1.08999 * 109.46781 * 60.00002 * 8 7 6 39 39 H 1.08998 * 109.46898 * 300.00280 * 8 7 6 40 40 H 1.09002 * 109.46733 * 59.99631 * 9 8 7 41 41 H 1.09002 * 109.46889 * 300.00588 * 9 8 7 42 42 H 1.09004 * 109.46724 * 60.00538 * 10 9 8 43 43 H 1.08991 * 109.47467 * 300.00398 * 10 9 8 44 44 H 0.96995 * 119.99672 * 176.06957 * 15 14 12 45 45 H 1.08998 * 115.55292 * 328.90743 * 20 11 10 46 46 H 1.09004 * 117.49709 * 0.02562 * 21 20 11 47 47 H 1.09001 * 117.49616 * 145.02232 * 21 20 11 48 48 H 1.08992 * 117.50031 * 214.97936 * 22 20 11 49 49 H 1.09007 * 117.49694 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1199 4.3276 0.0000 8 6 7.6500 4.3276 0.0006 9 6 8.1600 5.7701 0.0013 10 6 9.6899 5.7702 0.0026 11 7 10.1782 7.1514 0.0026 12 6 10.4074 7.7966 -1.1833 13 1 10.2117 8.8553 -1.2687 14 6 10.8912 7.0899 -2.2758 15 7 11.5304 5.9538 -2.0940 16 14 10.6353 7.7514 -4.0039 17 1 11.7794 8.6223 -4.3750 18 1 10.5454 6.6182 -4.9594 19 1 9.3776 8.5396 -4.0510 20 6 10.4213 7.8423 1.2713 21 6 10.8581 9.3072 1.2056 22 6 11.8654 8.2250 1.6020 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9329 0.9289 -0.8909 31 1 3.9337 0.9286 0.8891 32 1 3.7170 3.3983 0.8904 33 1 3.7163 3.3993 -0.8896 34 1 5.9733 2.3716 -0.8903 35 1 5.9734 2.3709 0.8898 36 1 5.7566 4.8414 0.8899 37 1 5.7566 4.8414 -0.8900 38 1 8.0136 3.8137 -0.8891 39 1 8.0129 3.8139 0.8908 40 1 7.7962 6.2837 0.8913 41 1 7.7969 6.2842 -0.8887 42 1 10.0539 5.2565 -0.8873 43 1 10.0525 5.2562 0.8927 44 1 11.8183 5.4316 -2.8589 45 1 9.7771 7.5458 2.0991 46 1 10.9640 9.7570 0.2183 47 1 10.5014 9.9744 1.9903 48 1 12.1710 8.1806 2.6472 49 1 12.6346 7.9623 0.8756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706732660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:38 Heat of formation + Delta-G solvation = -12.108220 kcal Electronic energy + Delta-G solvation = -19991.195948 eV Core-core repulsion = 17145.633406 eV Total energy + Delta-G solvation = -2845.562542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -37.26838 -36.91050 -35.43624 -33.80910 -32.56934 -30.79856 -29.24649 -26.80035 -24.73668 -23.40752 -21.71321 -21.32699 -21.18117 -20.61356 -20.22243 -19.51485 -16.26390 -16.18518 -15.48675 -15.22643 -14.58568 -14.29377 -14.24956 -13.79057 -13.75250 -13.10071 -13.02800 -12.72081 -12.51264 -12.12165 -11.94179 -11.75593 -11.45838 -11.38300 -11.22986 -11.05161 -10.90899 -10.80279 -10.72998 -10.66711 -10.56854 -10.43534 -10.27176 -10.18919 -10.04708 -9.69721 -9.53980 -9.39428 -9.16464 -8.40698 -6.49695 -5.72639 -3.32826 3.36490 3.44346 3.47922 4.45438 4.49588 4.65808 4.81852 4.94776 4.98375 5.02154 5.16295 5.22378 5.30913 5.38090 5.48407 5.48719 5.49457 5.55460 5.72440 5.73171 5.78538 5.82488 5.93561 5.94892 5.97382 6.00090 6.09723 6.15163 6.17710 6.19237 6.29098 6.33949 6.38478 6.50406 6.54747 6.58742 6.67985 6.73261 6.93244 6.96546 7.10615 7.26481 7.33940 7.78820 7.86221 8.53348 9.21608 9.85444 10.41409 11.22263 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.002793 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.466954 B =10023.699173 C =10853.538786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.115 4.115 9 C -0.132 4.132 10 C 0.145 3.855 11 N -0.554 5.554 12 C -0.253 4.253 13 H 0.064 0.936 14 C 0.008 3.992 15 N -0.885 5.885 16 Si 0.894 3.106 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.122 3.878 21 C -0.198 4.198 22 C -0.224 4.224 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.022 0.978 44 H 0.253 0.747 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 -8.835 5.234 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.172 4.172 10 C 0.019 3.981 11 N -0.270 5.270 12 C -0.383 4.383 13 H 0.082 0.918 14 C -0.192 4.192 15 N -0.527 5.527 16 Si 0.723 3.277 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.203 1.203 20 C 0.013 3.987 21 C -0.236 4.236 22 C -0.265 4.265 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.896 -8.952 5.085 18.939 hybrid contribution -0.005 0.363 -0.895 0.966 sum -15.901 -8.588 4.191 18.552 Atomic orbital electron populations 1.21785 0.96082 1.01433 1.01764 1.21553 0.95687 0.97203 1.01935 1.21642 0.95777 0.96473 1.01965 1.21626 0.94979 0.97285 1.01946 1.21618 0.96017 0.96261 1.01857 1.21628 0.94659 0.97635 1.01815 1.21610 0.96580 0.95749 1.01570 1.21533 0.93989 0.98477 1.01315 1.22136 1.00181 0.94196 1.00677 1.21003 0.89420 0.85844 1.01814 1.43467 1.72621 1.11425 0.99513 1.19048 1.37019 0.94461 0.87754 0.91839 1.25107 0.96817 0.98196 0.99044 1.70052 1.37208 1.15878 1.29588 0.86444 0.78240 0.78158 0.84833 1.21323 1.21461 1.20345 1.21215 0.93466 0.93418 0.90642 1.23025 1.05951 0.92668 1.01955 1.23370 0.97106 1.06562 0.99471 0.92935 0.92817 0.92805 0.92117 0.92138 0.92141 0.92115 0.92110 0.92165 0.92250 0.92175 0.92186 0.92303 0.92576 0.92342 0.92346 0.92904 0.94150 0.92470 0.88347 0.95982 0.93664 0.89701 0.88558 0.90860 0.91329 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 4 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 5 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 6 C -0.12 -1.40 5.21 -26.73 -0.14 -1.54 16 7 C -0.12 -1.62 5.22 -26.73 -0.14 -1.76 16 8 C -0.11 -1.89 5.21 -26.73 -0.14 -2.03 16 9 C -0.13 -2.62 5.54 -26.73 -0.15 -2.77 16 10 C 0.14 3.41 5.34 -4.04 -0.02 3.39 16 11 N -0.55 -13.95 2.78 -165.66 -0.46 -14.41 16 12 C -0.25 -6.91 8.63 -15.06 -0.13 -7.04 16 13 H 0.06 1.74 6.55 -52.48 -0.34 1.39 16 14 C 0.01 0.23 4.96 -17.43 -0.09 0.14 16 15 N -0.88 -25.42 11.33 55.49 0.63 -24.79 16 16 Si 0.89 21.62 29.61 -169.99 -5.03 16.59 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.12 2.70 6.56 -67.93 -0.45 2.26 16 21 C -0.20 -4.04 9.80 -26.69 -0.26 -4.30 16 22 C -0.22 -4.74 10.36 -26.69 -0.28 -5.02 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.10 2.61 5.35 -51.93 -0.28 2.34 16 43 H 0.02 0.50 8.07 -51.93 -0.42 0.08 16 44 H 0.25 7.02 8.32 -40.82 -0.34 6.68 16 45 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 46 H 0.10 2.13 6.37 -51.93 -0.33 1.80 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -28.01 385.29 -11.29 -39.30 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -10.23 Total: 1.59 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -2.00 Total: -24.07 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.17 Total: -39.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.01 -11.29 -39.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706732660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.189 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds