Wall clock time and date at job start Mon Mar 30 2020 08:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 C 1.53003 * 109.46766 * 240.00395 * 2 1 3 5 5 C 1.53007 * 109.46982 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.46746 * 300.00056 * 5 4 2 7 7 N 1.46895 * 109.47049 * 179.97438 * 5 4 2 8 8 C 1.46910 * 110.99703 * 85.00060 * 7 5 4 9 9 C 1.53003 * 109.46824 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.46838 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47119 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.53001 * 109.47183 * 59.99637 * 5 4 2 21 21 C 1.53003 * 109.47302 * 300.00433 * 20 5 4 22 22 C 1.53002 * 109.46641 * 300.00000 * 21 20 5 23 23 C 1.52993 * 109.47103 * 180.02562 * 21 20 5 24 24 C 1.52997 * 109.47479 * 59.99634 * 21 20 5 25 25 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47082 * 299.99749 * 1 2 3 27 27 H 1.09002 * 109.46978 * 59.99488 * 1 2 3 28 28 H 1.08989 * 109.47438 * 59.99973 * 4 2 1 29 29 H 1.08999 * 109.46953 * 299.99737 * 4 2 1 30 30 H 1.00897 * 111.00017 * 208.95036 * 7 5 4 31 31 H 1.08998 * 109.47017 * 60.00119 * 8 7 5 32 32 H 1.09002 * 109.46670 * 299.99530 * 8 7 5 33 33 H 1.08998 * 109.46943 * 60.00420 * 9 8 7 34 34 H 1.08994 * 109.47116 * 300.00031 * 9 8 7 35 35 H 1.09004 * 109.46806 * 60.00265 * 10 9 8 36 36 H 1.09000 * 109.47828 * 300.00570 * 10 9 8 37 37 H 1.09004 * 109.47066 * 60.00422 * 11 10 9 38 38 H 1.08994 * 109.47405 * 300.00252 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.47021 * 59.99885 * 20 5 4 41 41 H 1.08995 * 109.46808 * 180.02562 * 20 5 4 42 42 H 1.09000 * 109.46818 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47360 * 299.99534 * 22 21 20 44 44 H 1.08994 * 109.47537 * 60.00383 * 22 21 20 45 45 H 1.08999 * 109.47355 * 299.99659 * 23 21 20 46 46 H 1.08993 * 109.47479 * 60.00110 * 23 21 20 47 47 H 1.09000 * 109.46983 * 179.97438 * 23 21 20 48 48 H 1.09000 * 109.47423 * 180.02562 * 24 21 20 49 49 H 1.09002 * 109.47076 * 59.99828 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2491 6 1 3.9337 0.3057 -1.2488 7 7 4.0596 -1.4147 -2.4482 8 6 4.1229 -0.4998 -3.5959 9 6 4.6366 -1.2558 -4.8229 10 6 4.7020 -0.3031 -6.0183 11 6 5.2150 -1.0591 -7.2455 12 6 5.2800 -0.1206 -8.4228 13 1 4.9853 0.9120 -8.3072 14 6 5.7217 -0.5786 -9.6461 15 7 6.0810 -1.8359 -9.7867 16 14 5.8095 0.5866 -11.1034 17 1 7.1464 1.2318 -11.1414 18 1 5.5914 -0.1747 -12.3596 19 1 4.7605 1.6289 -10.9678 20 6 4.0795 -1.4434 0.0002 21 6 3.5695 -0.7223 1.2495 22 6 4.0801 0.7201 1.2498 23 6 4.0796 -1.4435 2.4986 24 6 2.0396 -0.7216 1.2492 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6767 -0.2074 -2.1392 29 1 1.6766 -1.7488 -1.2493 30 1 4.9570 -1.8430 -2.2773 31 1 4.7996 0.3235 -3.3673 32 1 3.1277 -0.1058 -3.8018 33 1 3.9603 -2.0793 -5.0517 34 1 5.6319 -1.6494 -4.6168 35 1 5.3781 0.5208 -5.7897 36 1 3.7066 0.0904 -6.2243 37 1 4.5385 -1.8827 -7.4739 38 1 6.2104 -1.4528 -7.0398 39 1 6.3914 -2.1582 -10.6474 40 1 3.7158 -2.4710 -0.0001 41 1 5.1695 -1.4434 0.0005 42 1 3.7164 1.2340 2.1395 43 1 5.1700 0.7197 1.2500 44 1 3.7171 1.2342 0.3599 45 1 3.7163 -2.4712 2.4986 46 1 5.1695 -1.4435 2.4986 47 1 3.7166 -0.9295 3.3886 48 1 1.6762 -0.2075 2.1390 49 1 1.6758 -1.7492 1.2489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708253810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:40 Heat of formation + Delta-G solvation = -59.080179 kcal Electronic energy + Delta-G solvation = -20753.836474 eV Core-core repulsion = 17906.237074 eV Total energy + Delta-G solvation = -2847.599399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11227 -36.43154 -34.33520 -34.04316 -32.29179 -30.06004 -27.67756 -27.36370 -26.79465 -26.52290 -24.19446 -21.45815 -21.19308 -20.54177 -19.88712 -18.63912 -16.21454 -15.79321 -15.36585 -15.26416 -15.03093 -14.48435 -14.43646 -14.25826 -13.65430 -13.44064 -12.95674 -12.75070 -12.61100 -12.42534 -12.22325 -12.05907 -12.00307 -11.68326 -11.63243 -11.43659 -11.23548 -11.07097 -10.99003 -10.93806 -10.58361 -10.56732 -10.39081 -10.37658 -10.24623 -10.04206 -9.58848 -9.21249 -8.96213 -8.30991 -8.28013 -5.95232 -3.97289 3.34352 3.40319 3.44027 4.07760 4.37789 4.43868 4.49708 4.67783 4.82647 4.96442 5.04808 5.12251 5.18561 5.29646 5.37177 5.40154 5.41833 5.43592 5.49510 5.52787 5.57088 5.60187 5.65474 5.69323 5.75078 5.82353 5.83491 5.92235 5.96825 5.97395 6.09330 6.10972 6.17215 6.20136 6.22559 6.35442 6.40746 6.57131 6.87648 7.01703 7.13540 7.30095 7.51620 7.74282 7.90641 8.06278 8.49166 9.10307 9.66347 11.16178 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034604 B = 0.002724 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.972177 B =10276.440250 C =10602.487095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.101 4.101 5 C 0.086 3.914 6 H 0.044 0.956 7 N -0.689 5.689 8 C 0.061 3.939 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.109 4.109 21 C -0.063 4.063 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.101 4.101 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.339 0.661 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 2.342 25.897 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.024 4.024 6 H 0.062 0.938 7 N -0.320 5.320 8 C -0.068 4.068 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.147 4.147 21 C -0.063 4.063 22 C -0.203 4.203 23 C -0.198 4.198 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.791 1.967 25.589 26.821 hybrid contribution 0.922 1.115 -0.701 1.608 sum -6.868 3.083 24.888 26.002 Atomic orbital electron populations 1.21812 0.95294 1.01789 1.01458 1.21193 0.95347 0.99778 0.95048 0.91205 1.21577 0.94489 1.01088 0.96759 1.21550 0.95570 0.96034 0.89205 0.93846 1.60521 1.33223 1.33840 1.04374 1.22101 1.00383 0.93656 0.90661 1.21633 1.00508 0.99256 0.93927 1.21586 1.00160 0.97721 0.95222 1.19089 0.96170 0.95418 0.90919 1.21301 1.43274 0.96447 0.94774 0.92795 1.25038 0.95554 0.95090 0.98887 1.69974 1.44757 1.14377 1.24485 0.86611 0.78346 0.80949 0.82194 1.20718 1.21228 1.19904 1.21766 0.99922 0.99830 0.93159 1.20500 0.95428 0.95525 0.94866 1.21995 1.00763 0.95694 1.01892 1.21855 1.00911 1.00176 0.96856 1.21646 0.94090 1.00693 0.97422 0.92704 0.92972 0.92666 0.92088 0.91378 0.84337 0.95781 0.91397 0.91704 0.92829 0.93754 0.93494 0.96610 0.96766 0.93066 0.91099 0.92230 0.92864 0.92884 0.92001 0.92644 0.92725 0.92773 0.92236 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.09 -0.82 2.45 -90.62 -0.22 -1.04 16 3 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 4 C -0.10 -1.06 4.71 -26.73 -0.13 -1.19 16 5 C 0.09 0.93 2.22 -67.71 -0.15 0.78 16 6 H 0.04 0.50 6.09 -51.93 -0.32 0.18 16 7 N -0.69 -8.83 6.31 -106.72 -0.67 -9.50 16 8 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 9 C -0.12 -2.03 5.47 -26.73 -0.15 -2.18 16 10 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 16 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 20 C -0.11 -1.00 4.00 -26.73 -0.11 -1.11 16 21 C -0.06 -0.49 0.77 -154.51 -0.12 -0.61 16 22 C -0.15 -1.15 7.78 37.16 0.29 -0.87 16 23 C -0.14 -0.99 8.47 37.15 0.31 -0.67 16 24 C -0.10 -0.79 4.01 -26.73 -0.11 -0.90 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.34 4.10 8.34 -39.29 -0.33 3.78 16 31 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 32 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -29.99 369.05 -10.13 -40.12 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -9.99 Total: -2.67 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -0.74 Total: -23.71 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.06 Total: -36.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.99 -10.13 -40.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708253810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.964 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds