Wall clock time and date at job start Mon Mar 30 2020 08:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 C 1.53003 * 109.46766 * 240.00395 * 2 1 3 5 5 C 1.53007 * 109.46982 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.46746 * 300.00056 * 5 4 2 7 7 N 1.46895 * 109.47049 * 179.97438 * 5 4 2 8 8 C 1.46910 * 110.99703 * 85.00060 * 7 5 4 9 9 C 1.53003 * 109.46824 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.46838 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47119 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.53001 * 109.47183 * 59.99637 * 5 4 2 21 21 C 1.53003 * 109.47302 * 300.00433 * 20 5 4 22 22 C 1.53002 * 109.46641 * 300.00000 * 21 20 5 23 23 C 1.52993 * 109.47103 * 180.02562 * 21 20 5 24 24 C 1.52997 * 109.47479 * 59.99634 * 21 20 5 25 25 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47082 * 299.99749 * 1 2 3 27 27 H 1.09002 * 109.46978 * 59.99488 * 1 2 3 28 28 H 1.08989 * 109.47438 * 59.99973 * 4 2 1 29 29 H 1.08999 * 109.46953 * 299.99737 * 4 2 1 30 30 H 1.00897 * 111.00017 * 208.95036 * 7 5 4 31 31 H 1.08998 * 109.47017 * 60.00119 * 8 7 5 32 32 H 1.09002 * 109.46670 * 299.99530 * 8 7 5 33 33 H 1.08998 * 109.46943 * 60.00420 * 9 8 7 34 34 H 1.08994 * 109.47116 * 300.00031 * 9 8 7 35 35 H 1.09004 * 109.46806 * 60.00265 * 10 9 8 36 36 H 1.09000 * 109.47828 * 300.00570 * 10 9 8 37 37 H 1.09004 * 109.47066 * 60.00422 * 11 10 9 38 38 H 1.08994 * 109.47405 * 300.00252 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.47021 * 59.99885 * 20 5 4 41 41 H 1.08995 * 109.46808 * 180.02562 * 20 5 4 42 42 H 1.09000 * 109.46818 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47360 * 299.99534 * 22 21 20 44 44 H 1.08994 * 109.47537 * 60.00383 * 22 21 20 45 45 H 1.08999 * 109.47355 * 299.99659 * 23 21 20 46 46 H 1.08993 * 109.47479 * 60.00110 * 23 21 20 47 47 H 1.09000 * 109.46983 * 179.97438 * 23 21 20 48 48 H 1.09000 * 109.47423 * 180.02562 * 24 21 20 49 49 H 1.09002 * 109.47076 * 59.99828 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2491 6 1 3.9337 0.3057 -1.2488 7 7 4.0596 -1.4147 -2.4482 8 6 4.1229 -0.4998 -3.5959 9 6 4.6366 -1.2558 -4.8229 10 6 4.7020 -0.3031 -6.0183 11 6 5.2150 -1.0591 -7.2455 12 6 5.2800 -0.1206 -8.4228 13 1 4.9853 0.9120 -8.3072 14 6 5.7217 -0.5786 -9.6461 15 7 6.0810 -1.8359 -9.7867 16 14 5.8095 0.5866 -11.1034 17 1 7.1464 1.2318 -11.1414 18 1 5.5914 -0.1747 -12.3596 19 1 4.7605 1.6289 -10.9678 20 6 4.0795 -1.4434 0.0002 21 6 3.5695 -0.7223 1.2495 22 6 4.0801 0.7201 1.2498 23 6 4.0796 -1.4435 2.4986 24 6 2.0396 -0.7216 1.2492 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6767 -0.2074 -2.1392 29 1 1.6766 -1.7488 -1.2493 30 1 4.9570 -1.8430 -2.2773 31 1 4.7996 0.3235 -3.3673 32 1 3.1277 -0.1058 -3.8018 33 1 3.9603 -2.0793 -5.0517 34 1 5.6319 -1.6494 -4.6168 35 1 5.3781 0.5208 -5.7897 36 1 3.7066 0.0904 -6.2243 37 1 4.5385 -1.8827 -7.4739 38 1 6.2104 -1.4528 -7.0398 39 1 6.3914 -2.1582 -10.6474 40 1 3.7158 -2.4710 -0.0001 41 1 5.1695 -1.4434 0.0005 42 1 3.7164 1.2340 2.1395 43 1 5.1700 0.7197 1.2500 44 1 3.7171 1.2342 0.3599 45 1 3.7163 -2.4712 2.4986 46 1 5.1695 -1.4435 2.4986 47 1 3.7166 -0.9295 3.3886 48 1 1.6762 -0.2075 2.1390 49 1 1.6758 -1.7492 1.2489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708253810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:40 Heat of formation + Delta-G solvation = -74.682648 kcal Electronic energy + Delta-G solvation = -20754.513047 eV Core-core repulsion = 17906.237074 eV Total energy + Delta-G solvation = -2848.275973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85789 -37.65821 -35.89245 -34.88808 -34.13050 -31.43514 -28.97664 -28.21117 -27.44710 -27.27478 -25.98256 -23.04882 -22.15309 -21.53811 -21.27944 -19.34006 -18.43729 -16.92602 -16.55975 -16.20804 -16.05517 -15.81486 -15.70092 -15.13124 -14.55044 -14.52206 -14.26133 -14.08465 -13.62825 -13.47599 -13.35461 -13.11919 -12.94145 -12.78566 -12.67892 -12.65160 -12.42965 -12.33941 -12.27570 -12.10377 -11.90811 -11.78518 -11.64459 -11.39478 -11.34119 -11.24576 -11.09735 -10.86983 -10.73871 -10.56168 -9.32951 -8.20592 -6.32239 1.38817 1.40741 1.51994 2.40373 3.11865 3.12077 3.69432 3.73183 3.97459 4.08627 4.10856 4.18572 4.27672 4.37999 4.39063 4.47350 4.54666 4.58147 4.63779 4.71481 4.75101 4.80699 4.84190 4.88745 4.93415 4.94499 5.01985 5.04030 5.10094 5.16251 5.18816 5.21132 5.24121 5.28977 5.30538 5.34691 5.36227 5.46628 5.48374 5.53971 5.54536 5.67656 5.76989 5.86014 6.17005 6.25200 6.51038 6.85242 7.37060 8.91423 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034604 B = 0.002724 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.972177 B =10276.440250 C =10602.487095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.099 4.099 5 C 0.088 3.912 6 H 0.042 0.958 7 N -0.695 5.695 8 C 0.074 3.926 9 C -0.105 4.105 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.546 4.546 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.104 4.104 21 C -0.060 4.060 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.098 4.098 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.343 0.657 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.049 0.951 37 H -0.011 1.011 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.554 3.650 27.055 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.137 4.137 5 C -0.021 4.021 6 H 0.059 0.941 7 N -0.326 5.326 8 C -0.055 4.055 9 C -0.143 4.143 10 C -0.135 4.135 11 C -0.014 4.014 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.142 4.142 21 C -0.061 4.061 22 C -0.202 4.202 23 C -0.196 4.196 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.112 3.279 26.769 28.162 hybrid contribution 1.023 0.661 -1.055 1.611 sum -7.088 3.940 25.714 26.962 Atomic orbital electron populations 1.21802 0.94729 1.01866 1.01832 1.21157 0.95802 0.99541 0.94446 0.91192 1.21553 0.94295 1.00572 0.97272 1.21588 0.95672 0.95898 0.88973 0.94054 1.60485 1.33627 1.33738 1.04749 1.21849 1.00125 0.93493 0.90065 1.21459 1.00514 0.98353 0.93936 1.21396 0.99937 0.97858 0.94293 1.19015 0.94360 0.94907 0.93084 1.21749 1.43575 0.97078 0.95954 0.92226 1.26035 0.94845 0.96914 1.02278 1.70109 1.45395 1.16462 1.25539 0.85421 0.78926 0.78655 0.77895 1.19635 1.20620 1.18708 1.21726 0.99998 0.99481 0.92992 1.20492 0.95490 0.95546 0.94573 1.21979 1.00718 0.95547 1.01969 1.21829 1.00958 1.00185 0.96589 1.21624 0.93954 1.00595 0.97332 0.92783 0.91726 0.93181 0.93544 0.92316 0.83846 0.95239 0.91566 0.92751 0.92806 0.93163 0.93233 0.99297 0.99202 0.92742 0.91582 0.92038 0.91881 0.92967 0.92813 0.92579 0.92666 0.91864 0.91046 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 2 C -0.09 -1.44 2.45 -10.79 -0.03 -1.47 16 3 H 0.07 1.13 6.43 -2.39 -0.02 1.12 16 4 C -0.10 -2.02 4.71 30.60 0.14 -1.87 16 5 C 0.09 1.82 2.22 44.92 0.10 1.92 16 6 H 0.04 0.90 6.09 -2.39 -0.01 0.88 16 7 N -0.69 -17.35 6.31 -491.54 -3.10 -20.45 16 8 C 0.07 2.12 5.48 86.30 0.47 2.59 16 9 C -0.10 -3.70 5.47 30.59 0.17 -3.53 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.55 -32.18 9.11 25.60 0.23 -31.94 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 15 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 16 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 20 C -0.10 -1.78 4.00 30.60 0.12 -1.66 16 21 C -0.06 -0.85 0.77 -52.18 -0.04 -0.89 16 22 C -0.15 -2.02 7.78 71.98 0.56 -1.46 16 23 C -0.14 -1.66 8.47 71.98 0.61 -1.05 16 24 C -0.10 -1.34 4.01 30.59 0.12 -1.22 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.34 8.04 8.34 -89.70 -0.75 7.30 16 31 H 0.03 0.82 8.06 -2.39 -0.02 0.80 16 32 H 0.07 1.93 7.44 -2.39 -0.02 1.92 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 35 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 40 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.84 4.81 -2.39 -0.01 0.82 16 45 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.15 369.05 3.22 -60.93 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.11 Total: 14.78 kcal Atomic # 6 Polarization: -48.18 SS G_CDS: 3.90 Total: -44.29 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.82 Total: -78.64 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.15 3.22 -60.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708253810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.754 kcal (2) G-P(sol) polarization free energy of solvation -64.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds