Wall clock time and date at job start Mon Mar 30 2020 08:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46941 * 119.99979 * 2 1 3 5 5 C 1.53007 * 109.46815 * 179.97438 * 4 2 1 6 6 H 1.08994 * 109.47388 * 60.00078 * 5 4 2 7 7 N 1.46907 * 109.46878 * 180.02562 * 5 4 2 8 8 C 1.46902 * 110.99665 * 274.99649 * 7 5 4 9 9 C 1.53001 * 109.46901 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.52998 * 109.47176 * 299.99709 * 5 4 2 21 21 C 1.53006 * 109.47011 * 60.00411 * 20 5 4 22 22 C 1.52996 * 109.47190 * 59.99794 * 21 20 5 23 23 C 1.52998 * 109.47011 * 180.02562 * 21 20 5 24 24 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 27 27 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 28 28 H 1.08998 * 109.47259 * 60.00330 * 4 2 1 29 29 H 1.09001 * 109.47234 * 299.99804 * 4 2 1 30 30 H 1.00898 * 110.99982 * 38.95081 * 7 5 4 31 31 H 1.09001 * 109.46712 * 60.00151 * 8 7 5 32 32 H 1.09002 * 109.47411 * 300.00262 * 8 7 5 33 33 H 1.09001 * 109.46652 * 60.00371 * 9 8 7 34 34 H 1.08992 * 109.47514 * 300.00460 * 9 8 7 35 35 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 37 37 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 38 38 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 39 39 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.47068 * 179.97438 * 20 5 4 41 41 H 1.08994 * 109.47263 * 300.00446 * 20 5 4 42 42 H 1.08998 * 109.47296 * 60.00177 * 22 21 20 43 43 H 1.09002 * 109.47291 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47174 * 300.00210 * 22 21 20 45 45 H 1.09004 * 109.47078 * 60.00145 * 23 21 20 46 46 H 1.09002 * 109.46856 * 180.02562 * 23 21 20 47 47 H 1.08998 * 109.47068 * 299.99573 * 23 21 20 48 48 H 1.08997 * 109.47311 * 60.00466 * 24 2 1 49 49 H 1.08998 * 109.47564 * 299.99943 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2490 6 1 3.9337 0.3056 1.2487 7 7 4.0596 -1.4149 2.4481 8 6 4.1230 -0.5001 3.5958 9 6 4.6355 -1.2564 4.8231 10 6 4.7010 -0.3037 6.0185 11 6 5.2141 -1.0598 7.2457 12 6 5.2780 -0.1218 8.4233 13 1 4.9818 0.9104 8.3082 14 6 5.7135 -0.5814 9.6481 15 7 6.0737 -1.8385 9.7884 16 14 5.7934 0.5816 11.1077 17 1 4.4992 0.5521 11.8355 18 1 6.8845 0.1560 12.0207 19 1 6.0597 1.9613 10.6273 20 6 4.0794 -1.4435 -0.0002 21 6 3.5695 -0.7222 -1.2495 22 6 4.0800 0.7201 -1.2499 23 6 4.0784 -1.4443 -2.4987 24 6 2.0399 -0.7213 -1.2492 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6766 -1.7489 1.2493 29 1 1.6766 -0.2074 2.1393 30 1 3.4892 -2.2201 2.6586 31 1 3.1278 -0.1060 3.8017 32 1 4.7997 0.3234 3.3672 33 1 5.6307 -1.6507 4.6174 34 1 3.9587 -2.0795 5.0515 35 1 5.3777 0.5198 5.7904 36 1 3.7057 0.0902 6.2241 37 1 4.5377 -1.8835 7.4740 38 1 6.2094 -1.4535 7.0400 39 1 6.3798 -2.1620 10.6502 40 1 5.1694 -1.4435 -0.0007 41 1 3.7157 -2.4710 0.0000 42 1 5.1700 0.7197 -1.2501 43 1 3.7163 1.2340 -2.1396 44 1 3.7170 1.2342 -0.3599 45 1 3.7142 -2.4717 -2.4983 46 1 3.7154 -0.9301 -3.3887 47 1 5.1684 -1.4450 -2.4992 48 1 1.6767 -0.2075 -2.1392 49 1 1.6766 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708253812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:42 Heat of formation + Delta-G solvation = -59.688535 kcal Electronic energy + Delta-G solvation = -20758.234629 eV Core-core repulsion = 17910.608849 eV Total energy + Delta-G solvation = -2847.625780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13653 -36.46588 -34.39432 -33.98875 -32.29375 -30.04576 -27.63847 -27.32001 -26.81380 -26.45471 -24.19551 -21.44825 -21.26667 -20.74650 -19.89395 -18.62872 -16.22326 -15.78012 -15.51890 -15.07535 -15.01706 -14.43747 -14.40173 -14.18650 -13.70806 -13.47487 -12.91305 -12.81987 -12.58764 -12.39032 -12.24249 -12.04084 -11.99168 -11.68190 -11.61879 -11.51751 -11.28874 -11.12304 -10.97832 -10.93891 -10.59797 -10.54111 -10.41616 -10.39005 -10.26722 -10.12165 -9.59089 -9.21344 -8.96326 -8.30463 -8.24252 -5.95302 -3.97402 3.34278 3.40246 3.43945 4.11016 4.36559 4.49247 4.49988 4.69835 4.75844 4.86060 5.02461 5.10878 5.28574 5.31136 5.37176 5.38272 5.40186 5.42931 5.48944 5.49704 5.57604 5.61593 5.63911 5.67162 5.74716 5.82332 5.85200 5.89315 5.93465 5.98081 6.03867 6.08775 6.16370 6.22362 6.28422 6.32074 6.35842 6.56410 6.87491 7.01476 7.12995 7.29709 7.51148 7.74169 7.90513 8.06203 8.49064 9.10219 9.66275 11.16104 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034645 B = 0.002723 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.005191 B =10279.331642 C =10598.509131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.144 4.144 5 C 0.086 3.914 6 H 0.077 0.923 7 N -0.687 5.687 8 C 0.060 3.940 9 C -0.116 4.116 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.094 4.094 21 C -0.065 4.065 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.101 4.101 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.338 0.662 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 2.088 -25.454 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.183 4.183 5 C -0.024 4.024 6 H 0.096 0.904 7 N -0.316 5.316 8 C -0.068 4.068 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.132 4.132 21 C -0.066 4.066 22 C -0.202 4.202 23 C -0.197 4.197 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.862 2.044 -25.472 26.736 hybrid contribution -0.947 0.647 1.165 1.635 sum -8.809 2.690 -24.308 25.994 Atomic orbital electron populations 1.21836 0.95454 1.01697 1.01510 1.21121 0.95183 0.99841 0.94779 0.90987 1.22351 0.97247 1.00860 0.97817 1.21631 0.91878 0.98291 0.90636 0.90443 1.60627 1.56959 1.09964 1.04064 1.22084 0.99009 0.95467 0.90290 1.21636 1.01339 0.98711 0.93668 1.21585 1.00045 0.97854 0.95196 1.19089 0.96247 0.95354 0.90911 1.21297 1.43373 0.96465 0.94658 0.92796 1.25038 0.95532 0.95097 0.98900 1.69974 1.44854 1.14406 1.24361 0.86612 0.77635 0.81240 0.82619 1.20717 1.21225 1.19904 1.21545 1.00942 0.98702 0.92033 1.20540 0.95063 0.95720 0.95269 1.21976 1.01004 0.95578 1.01659 1.21847 1.01062 1.00048 0.96777 1.21641 0.94475 1.00495 0.97268 0.92819 0.92760 0.92860 0.91914 0.92089 0.84394 0.95672 0.91465 0.91704 0.92838 0.93493 0.93751 0.96773 0.96607 0.93065 0.91317 0.92134 0.92640 0.93020 0.92137 0.92762 0.92894 0.92586 0.92224 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.15 0.34 -0.79 16 2 C -0.09 -0.75 2.45 -90.62 -0.22 -0.97 16 3 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 4 C -0.14 -1.38 4.45 -26.72 -0.12 -1.50 16 5 C 0.09 0.91 2.19 -67.71 -0.15 0.76 16 6 H 0.08 0.87 6.09 -51.93 -0.32 0.56 16 7 N -0.69 -8.71 6.25 -106.72 -0.67 -9.38 16 8 C 0.06 0.87 5.48 -3.82 -0.02 0.85 16 9 C -0.12 -2.03 5.47 -26.73 -0.15 -2.17 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.09 -0.90 4.34 -26.73 -0.12 -1.02 16 21 C -0.07 -0.52 0.77 -154.53 -0.12 -0.64 16 22 C -0.15 -1.16 7.78 37.16 0.29 -0.87 16 23 C -0.14 -1.02 8.47 37.16 0.31 -0.70 16 24 C -0.10 -0.78 4.01 -26.76 -0.11 -0.89 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.06 0.65 7.46 -51.93 -0.39 0.26 16 30 H 0.34 4.11 8.47 -39.29 -0.33 3.78 16 31 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 32 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -29.87 369.18 -10.13 -40.00 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -10.00 Total: -2.49 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -0.74 Total: -23.89 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.07 Total: -36.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.87 -10.13 -40.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708253812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.692 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds