Wall clock time and date at job start Mon Mar 30 2020 08:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46941 * 119.99979 * 2 1 3 5 5 C 1.53007 * 109.46815 * 179.97438 * 4 2 1 6 6 H 1.08994 * 109.47388 * 60.00078 * 5 4 2 7 7 N 1.46907 * 109.46878 * 180.02562 * 5 4 2 8 8 C 1.46902 * 110.99665 * 274.99649 * 7 5 4 9 9 C 1.53001 * 109.46901 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.52998 * 109.47176 * 299.99709 * 5 4 2 21 21 C 1.53006 * 109.47011 * 60.00411 * 20 5 4 22 22 C 1.52996 * 109.47190 * 59.99794 * 21 20 5 23 23 C 1.52998 * 109.47011 * 180.02562 * 21 20 5 24 24 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 27 27 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 28 28 H 1.08998 * 109.47259 * 60.00330 * 4 2 1 29 29 H 1.09001 * 109.47234 * 299.99804 * 4 2 1 30 30 H 1.00898 * 110.99982 * 38.95081 * 7 5 4 31 31 H 1.09001 * 109.46712 * 60.00151 * 8 7 5 32 32 H 1.09002 * 109.47411 * 300.00262 * 8 7 5 33 33 H 1.09001 * 109.46652 * 60.00371 * 9 8 7 34 34 H 1.08992 * 109.47514 * 300.00460 * 9 8 7 35 35 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 37 37 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 38 38 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 39 39 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.47068 * 179.97438 * 20 5 4 41 41 H 1.08994 * 109.47263 * 300.00446 * 20 5 4 42 42 H 1.08998 * 109.47296 * 60.00177 * 22 21 20 43 43 H 1.09002 * 109.47291 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47174 * 300.00210 * 22 21 20 45 45 H 1.09004 * 109.47078 * 60.00145 * 23 21 20 46 46 H 1.09002 * 109.46856 * 180.02562 * 23 21 20 47 47 H 1.08998 * 109.47068 * 299.99573 * 23 21 20 48 48 H 1.08997 * 109.47311 * 60.00466 * 24 2 1 49 49 H 1.08998 * 109.47564 * 299.99943 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2490 6 1 3.9337 0.3056 1.2487 7 7 4.0596 -1.4149 2.4481 8 6 4.1230 -0.5001 3.5958 9 6 4.6355 -1.2564 4.8231 10 6 4.7010 -0.3037 6.0185 11 6 5.2141 -1.0598 7.2457 12 6 5.2780 -0.1218 8.4233 13 1 4.9818 0.9104 8.3082 14 6 5.7135 -0.5814 9.6481 15 7 6.0737 -1.8385 9.7884 16 14 5.7934 0.5816 11.1077 17 1 4.4992 0.5521 11.8355 18 1 6.8845 0.1560 12.0207 19 1 6.0597 1.9613 10.6273 20 6 4.0794 -1.4435 -0.0002 21 6 3.5695 -0.7222 -1.2495 22 6 4.0800 0.7201 -1.2499 23 6 4.0784 -1.4443 -2.4987 24 6 2.0399 -0.7213 -1.2492 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6766 -1.7489 1.2493 29 1 1.6766 -0.2074 2.1393 30 1 3.4892 -2.2201 2.6586 31 1 3.1278 -0.1060 3.8017 32 1 4.7997 0.3234 3.3672 33 1 5.6307 -1.6507 4.6174 34 1 3.9587 -2.0795 5.0515 35 1 5.3777 0.5198 5.7904 36 1 3.7057 0.0902 6.2241 37 1 4.5377 -1.8835 7.4740 38 1 6.2094 -1.4535 7.0400 39 1 6.3798 -2.1620 10.6502 40 1 5.1694 -1.4435 -0.0007 41 1 3.7157 -2.4710 0.0000 42 1 5.1700 0.7197 -1.2501 43 1 3.7163 1.2340 -2.1396 44 1 3.7170 1.2342 -0.3599 45 1 3.7142 -2.4717 -2.4983 46 1 3.7154 -0.9301 -3.3887 47 1 5.1684 -1.4450 -2.4992 48 1 1.6767 -0.2075 -2.1392 49 1 1.6766 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708253812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:42 Heat of formation + Delta-G solvation = -75.151908 kcal Electronic energy + Delta-G solvation = -20758.905171 eV Core-core repulsion = 17910.608849 eV Total energy + Delta-G solvation = -2848.296322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87888 -37.66857 -35.92269 -34.86185 -34.11609 -31.42223 -28.93700 -28.18834 -27.45220 -27.16774 -25.98867 -23.04381 -22.25276 -21.53935 -21.40714 -19.33299 -18.43503 -16.89043 -16.53545 -16.29986 -16.11274 -15.82440 -15.34704 -15.06504 -14.68258 -14.49155 -14.27831 -14.08437 -13.62611 -13.44855 -13.37415 -13.09672 -12.89900 -12.78848 -12.69237 -12.64527 -12.40339 -12.37996 -12.28102 -12.13233 -11.95494 -11.83887 -11.63604 -11.39235 -11.33855 -11.24068 -11.06683 -10.96125 -10.74842 -10.56015 -9.25689 -8.20457 -6.32130 1.38891 1.40832 1.52079 2.40458 3.12136 3.15667 3.67744 3.79969 3.94961 4.05886 4.09087 4.17931 4.25320 4.36413 4.37843 4.52227 4.55551 4.60133 4.66485 4.71067 4.76510 4.79554 4.84606 4.89576 4.92394 4.94036 4.98253 5.03370 5.12434 5.14862 5.20187 5.21769 5.23976 5.27776 5.29345 5.32880 5.37773 5.44975 5.52537 5.54637 5.56255 5.65707 5.77308 5.86249 6.17367 6.25361 6.50762 6.85439 7.37215 8.91555 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034645 B = 0.002723 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.005191 B =10279.331642 C =10598.509131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.138 4.138 5 C 0.088 3.912 6 H 0.072 0.928 7 N -0.693 5.693 8 C 0.073 3.927 9 C -0.105 4.105 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.089 4.089 21 C -0.062 4.062 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.097 4.097 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.342 0.658 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.050 0.950 37 H -0.011 1.011 38 H -0.011 1.011 39 H 0.264 0.736 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.070 0.930 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.488 3.291 -26.434 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.178 4.178 5 C -0.021 4.021 6 H 0.090 0.910 7 N -0.323 5.323 8 C -0.056 4.056 9 C -0.143 4.143 10 C -0.135 4.135 11 C -0.014 4.014 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.128 4.128 21 C -0.063 4.063 22 C -0.201 4.201 23 C -0.196 4.196 24 C -0.135 4.135 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.160 0.840 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.743 3.251 -26.474 28.069 hybrid contribution -0.658 0.226 1.455 1.613 sum -9.401 3.477 -25.019 26.952 Atomic orbital electron populations 1.21816 0.94821 1.01862 1.01817 1.21099 0.95677 0.99585 0.94301 0.91135 1.22281 0.96292 1.00968 0.98212 1.21647 0.92635 0.97853 0.90003 0.91002 1.60593 1.57694 1.09977 1.04029 1.21833 0.99024 0.95142 0.89571 1.21463 1.01003 0.98130 0.93718 1.21395 0.99922 0.97914 0.94238 1.19016 0.94369 0.94910 0.93090 1.21747 1.43654 0.97104 0.95827 0.92212 1.26036 0.94825 0.96912 1.02309 1.70111 1.45507 1.16491 1.25415 0.85423 0.78033 0.79076 0.78374 1.19644 1.20630 1.18690 1.21498 1.00161 0.98746 0.92359 1.20519 0.95407 0.95618 0.94755 1.21966 1.00736 0.95545 1.01884 1.21828 1.00914 1.00159 0.96657 1.21610 0.93968 1.00559 0.97315 0.92725 0.93209 0.91830 0.91867 0.93113 0.84013 0.95112 0.91492 0.92736 0.92913 0.93178 0.93171 0.99244 0.99294 0.92750 0.92504 0.92269 0.93092 0.91959 0.92728 0.92607 0.91889 0.92859 0.91132 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.09 -1.30 2.45 -10.79 -0.03 -1.33 16 3 H 0.07 1.09 6.43 -2.39 -0.02 1.08 16 4 C -0.14 -2.50 4.45 30.60 0.14 -2.36 16 5 C 0.09 1.79 2.19 44.92 0.10 1.88 16 6 H 0.07 1.56 6.09 -2.39 -0.01 1.54 16 7 N -0.69 -17.13 6.25 -491.54 -3.07 -20.20 16 8 C 0.07 2.07 5.48 86.30 0.47 2.55 16 9 C -0.11 -3.70 5.47 30.59 0.17 -3.53 16 10 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 15 N -0.93 -58.47 13.29 21.45 0.28 -58.18 16 16 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.09 -1.63 4.34 30.60 0.13 -1.50 16 21 C -0.06 -0.90 0.77 -52.20 -0.04 -0.94 16 22 C -0.14 -2.09 7.78 71.98 0.56 -1.53 16 23 C -0.14 -1.76 8.47 71.98 0.61 -1.15 16 24 C -0.10 -1.29 4.01 30.58 0.12 -1.17 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 29 H 0.05 1.02 7.46 -2.39 -0.02 1.01 16 30 H 0.34 8.06 8.47 -89.70 -0.76 7.30 16 31 H 0.03 0.84 7.44 -2.39 -0.02 0.82 16 32 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 0.85 4.81 -2.39 -0.01 0.84 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -63.85 369.18 3.24 -60.61 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.10 Total: 15.11 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 3.90 Total: -44.53 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.79 Total: -78.38 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -63.85 3.24 -60.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708253812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.539 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds