Wall clock time and date at job start Mon Mar 30 2020 08:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52700 * 1 3 3 H 1.11085 * 106.76815 * 2 1 4 4 C 1.52361 * 110.79005 * 243.87326 * 2 1 3 5 5 C 1.52903 * 110.30689 * 287.08681 * 4 2 1 6 6 H 1.08599 * 110.44915 * 59.49838 * 5 4 2 7 7 N 1.47243 * 109.05122 * 179.14518 * 5 4 2 8 8 C 1.46906 * 110.99970 * 275.00200 * 7 5 4 9 9 C 1.52999 * 109.46904 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00344 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99769 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46755 * 89.99832 * 16 14 12 18 18 H 1.48495 * 109.46931 * 209.99846 * 16 14 12 19 19 H 1.48500 * 109.46738 * 330.00088 * 16 14 12 20 20 C 1.52720 * 108.69695 * 298.03271 * 5 4 2 21 21 C 1.52452 * 110.92971 * 61.51294 * 20 5 4 22 22 C 1.54441 * 107.68625 * 189.08369 * 21 20 5 23 23 C 1.53126 * 110.00338 * 72.37584 * 21 20 5 24 24 C 1.51648 * 111.90343 * 117.23018 * 2 1 3 25 25 H 1.09005 * 109.47005 * 176.12035 * 1 2 3 26 26 H 1.08998 * 109.47337 * 296.12825 * 1 2 3 27 27 H 1.09001 * 109.46911 * 56.13150 * 1 2 3 28 28 H 1.09217 * 109.62968 * 166.71409 * 4 2 1 29 29 H 1.09240 * 109.57410 * 47.34754 * 4 2 1 30 30 H 1.00896 * 111.00116 * 151.04292 * 7 5 4 31 31 H 1.08993 * 109.47034 * 59.99456 * 8 7 5 32 32 H 1.09000 * 109.46693 * 299.99798 * 8 7 5 33 33 H 1.08993 * 109.47839 * 59.99803 * 9 8 7 34 34 H 1.09000 * 109.47160 * 299.99365 * 9 8 7 35 35 H 1.09000 * 109.47050 * 299.99699 * 10 9 8 36 36 H 1.09001 * 109.46801 * 59.99811 * 10 9 8 37 37 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 38 38 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 40 40 H 1.09307 * 109.25472 * 182.22669 * 20 5 4 41 41 H 1.09324 * 109.24003 * 300.83730 * 20 5 4 42 42 H 1.09001 * 109.47059 * 181.79756 * 22 21 20 43 43 H 1.08998 * 109.47360 * 301.79394 * 22 21 20 44 44 H 1.08994 * 109.47578 * 61.79711 * 22 21 20 45 45 H 1.08997 * 109.47056 * 294.71584 * 23 21 20 46 46 H 1.09002 * 109.46641 * 54.70929 * 23 21 20 47 47 H 1.08998 * 109.47420 * 174.70951 * 23 21 20 48 48 H 1.10198 * 108.72073 * 203.48510 * 24 2 1 49 49 H 1.10166 * 108.78219 * 318.64412 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5270 0.0000 0.0000 3 1 1.8475 1.0636 0.0000 4 6 2.0678 -0.6272 -1.2789 5 6 1.8622 -2.1422 -1.2549 6 1 0.8066 -2.3805 -1.1643 7 7 2.3750 -2.7167 -2.5100 8 6 1.3602 -2.6551 -3.5704 9 6 1.9283 -3.2603 -4.8556 10 6 0.8711 -3.1968 -5.9599 11 6 1.4394 -3.8014 -7.2453 12 6 0.3979 -3.7394 -8.3328 13 1 -0.5721 -3.3111 -8.1277 14 6 0.6834 -4.2294 -9.5896 15 7 1.8647 -4.7504 -9.8394 16 14 -0.6078 -4.1531 -10.9373 17 1 -0.4752 -2.8728 -11.6779 18 1 -0.4134 -5.2891 -11.8738 19 1 -1.9611 -4.2368 -10.3316 20 6 2.6464 -2.7242 -0.0807 21 6 2.1417 -2.1617 1.2434 22 6 3.1219 -2.6122 2.3486 23 6 0.7713 -2.7576 1.5773 24 6 2.0927 -0.6438 1.2511 25 1 -0.3633 -1.0254 -0.0695 26 1 -0.3634 0.4526 0.9226 27 1 -0.3633 0.5727 -0.8533 28 1 3.1340 -0.4096 -1.3719 29 1 1.5457 -0.2073 -2.1416 30 1 2.6950 -3.6633 -2.3702 31 1 1.0838 -1.6160 -3.7488 32 1 0.4788 -3.2178 -3.2629 33 1 2.2044 -4.2995 -4.6769 34 1 2.8098 -2.6980 -5.1634 35 1 -0.0103 -3.7594 -5.6519 36 1 0.5946 -2.1577 -6.1388 37 1 2.3205 -3.2385 -7.5531 38 1 1.7161 -4.8405 -7.0667 39 1 2.0658 -5.0949 -10.7236 40 1 2.5379 -3.8118 -0.0785 41 1 3.7055 -2.4805 -0.1987 42 1 2.7702 -2.2515 3.3152 43 1 3.1759 -3.7007 2.3647 44 1 4.1113 -2.2023 2.1459 45 1 0.0418 -2.4281 0.8375 46 1 0.8354 -3.8457 1.5646 47 1 0.4611 -2.4234 2.5673 48 1 3.1128 -0.2607 1.4157 49 1 1.4986 -0.3152 2.1187 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708253814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:45 Heat of formation + Delta-G solvation = -57.548028 kcal Electronic energy + Delta-G solvation = -20857.222743 eV Core-core repulsion = 18009.689783 eV Total energy + Delta-G solvation = -2847.532960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.98445 -36.42759 -34.40669 -33.93501 -32.28092 -30.05074 -27.87747 -27.34177 -26.80961 -26.39698 -24.19845 -21.85250 -21.44159 -20.28497 -19.89686 -18.08539 -16.28542 -15.98557 -15.47449 -15.07854 -14.67894 -14.50354 -14.43903 -14.21553 -13.71198 -13.49402 -13.20590 -12.96385 -12.55412 -12.44026 -12.27655 -11.99942 -11.90541 -11.67814 -11.45043 -11.32442 -11.23619 -11.14341 -10.96213 -10.86964 -10.62246 -10.54946 -10.39490 -10.37784 -10.15955 -10.01365 -9.58563 -9.21044 -8.95983 -8.30615 -8.27159 -5.95027 -3.97134 3.34570 3.40424 3.44013 4.08191 4.37520 4.43589 4.49795 4.67004 4.84709 4.90462 4.99468 5.08746 5.15940 5.30989 5.34017 5.40214 5.40614 5.45747 5.49068 5.54756 5.58527 5.60288 5.64820 5.72144 5.74216 5.84688 5.87381 5.91707 5.94077 5.97770 6.06680 6.15582 6.20246 6.22299 6.29657 6.35703 6.36960 6.57542 6.88022 7.02070 7.13812 7.30381 7.52356 7.74471 7.90870 8.06461 8.49346 9.10480 9.66537 11.16382 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037367 B = 0.002753 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.141910 B =10167.851756 C =10468.067867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.060 0.940 4 C -0.100 4.100 5 C 0.089 3.911 6 H 0.045 0.955 7 N -0.691 5.691 8 C 0.061 3.939 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.107 4.107 21 C -0.054 4.054 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.338 0.662 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 6.927 25.963 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.079 0.921 4 C -0.138 4.138 5 C -0.020 4.020 6 H 0.063 0.937 7 N -0.321 5.321 8 C -0.068 4.068 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.145 4.145 21 C -0.055 4.055 22 C -0.203 4.203 23 C -0.203 4.203 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.972 7.431 25.634 26.707 hybrid contribution -1.247 -0.714 -0.564 1.543 sum -0.274 6.717 25.070 25.956 Atomic orbital electron populations 1.21924 0.95401 1.01997 1.01348 1.20824 0.95570 0.99413 0.94694 0.92134 1.21425 1.01614 0.94449 0.96298 1.21399 0.96817 0.95142 0.88690 0.93688 1.60650 1.39160 1.25918 1.06409 1.22089 0.92259 1.00749 0.91689 1.21635 0.99891 1.00053 0.93748 1.21587 0.96824 1.00272 0.95999 1.19091 0.96172 0.95846 0.90488 1.21300 0.99700 1.39215 0.95573 0.92796 1.25035 0.95397 0.95441 0.98685 1.69969 1.20929 1.40911 1.21795 0.86613 0.82021 0.77575 0.81906 1.20676 1.21246 1.19926 1.21649 1.00444 0.99428 0.92991 1.20336 0.95507 0.94854 0.94811 1.22290 0.98869 1.01109 0.98017 1.22071 0.96573 1.00396 1.01277 1.21275 1.01088 0.93866 0.97223 0.92331 0.92986 0.92720 0.91431 0.91988 0.84402 0.91404 0.95809 0.92840 0.91710 0.93747 0.93507 0.96622 0.96758 0.93064 0.92303 0.91170 0.92888 0.92734 0.92722 0.92093 0.92861 0.92869 0.92472 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.87 37.00 0.33 -0.93 16 2 C -0.09 -0.75 2.60 -91.79 -0.24 -0.99 16 3 H 0.06 0.51 8.29 -50.73 -0.42 0.09 16 4 C -0.10 -1.05 4.84 -27.11 -0.13 -1.18 16 5 C 0.09 0.96 2.32 -67.72 -0.16 0.80 16 6 H 0.05 0.52 5.86 -52.15 -0.31 0.21 16 7 N -0.69 -8.83 6.29 -106.84 -0.67 -9.50 16 8 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 9 C -0.12 -2.03 5.47 -26.73 -0.15 -2.18 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 16 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.11 -0.99 3.79 -27.16 -0.10 -1.09 16 21 C -0.05 -0.43 0.71 -154.54 -0.11 -0.54 16 22 C -0.15 -1.03 8.09 37.91 0.31 -0.72 16 23 C -0.15 -1.13 8.01 37.22 0.30 -0.83 16 24 C -0.10 -0.76 4.13 -27.99 -0.12 -0.88 16 25 H 0.06 0.52 4.72 -51.93 -0.25 0.27 16 26 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.76 8.16 -51.81 -0.42 0.33 16 29 H 0.06 0.72 7.36 -51.79 -0.38 0.34 16 30 H 0.34 4.09 8.33 -39.29 -0.33 3.77 16 31 H 0.07 1.01 7.37 -51.93 -0.38 0.63 16 32 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.06 0.53 8.05 -51.76 -0.42 0.12 16 41 H 0.07 0.68 8.11 -51.75 -0.42 0.26 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.38 8.05 -51.93 -0.42 -0.03 16 45 H 0.06 0.51 4.71 -51.93 -0.24 0.26 16 46 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.44 7.92 -51.25 -0.41 0.04 16 49 H 0.06 0.42 7.95 -51.26 -0.41 0.01 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -30.00 366.00 -10.04 -40.04 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -9.82 Total: -2.61 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -0.78 Total: -23.64 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.06 Total: -36.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.00 -10.04 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708253814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.508 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds