Wall clock time and date at job start Mon Mar 30 2020 08:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52700 * 1 3 3 H 1.11085 * 106.76815 * 2 1 4 4 C 1.52361 * 110.79005 * 243.87326 * 2 1 3 5 5 C 1.52903 * 110.30689 * 287.08681 * 4 2 1 6 6 H 1.08599 * 110.44915 * 59.49838 * 5 4 2 7 7 N 1.47243 * 109.05122 * 179.14518 * 5 4 2 8 8 C 1.46906 * 110.99970 * 275.00200 * 7 5 4 9 9 C 1.52999 * 109.46904 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00344 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99769 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46755 * 89.99832 * 16 14 12 18 18 H 1.48495 * 109.46931 * 209.99846 * 16 14 12 19 19 H 1.48500 * 109.46738 * 330.00088 * 16 14 12 20 20 C 1.52720 * 108.69695 * 298.03271 * 5 4 2 21 21 C 1.52452 * 110.92971 * 61.51294 * 20 5 4 22 22 C 1.54441 * 107.68625 * 189.08369 * 21 20 5 23 23 C 1.53126 * 110.00338 * 72.37584 * 21 20 5 24 24 C 1.51648 * 111.90343 * 117.23018 * 2 1 3 25 25 H 1.09005 * 109.47005 * 176.12035 * 1 2 3 26 26 H 1.08998 * 109.47337 * 296.12825 * 1 2 3 27 27 H 1.09001 * 109.46911 * 56.13150 * 1 2 3 28 28 H 1.09217 * 109.62968 * 166.71409 * 4 2 1 29 29 H 1.09240 * 109.57410 * 47.34754 * 4 2 1 30 30 H 1.00896 * 111.00116 * 151.04292 * 7 5 4 31 31 H 1.08993 * 109.47034 * 59.99456 * 8 7 5 32 32 H 1.09000 * 109.46693 * 299.99798 * 8 7 5 33 33 H 1.08993 * 109.47839 * 59.99803 * 9 8 7 34 34 H 1.09000 * 109.47160 * 299.99365 * 9 8 7 35 35 H 1.09000 * 109.47050 * 299.99699 * 10 9 8 36 36 H 1.09001 * 109.46801 * 59.99811 * 10 9 8 37 37 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 38 38 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 40 40 H 1.09307 * 109.25472 * 182.22669 * 20 5 4 41 41 H 1.09324 * 109.24003 * 300.83730 * 20 5 4 42 42 H 1.09001 * 109.47059 * 181.79756 * 22 21 20 43 43 H 1.08998 * 109.47360 * 301.79394 * 22 21 20 44 44 H 1.08994 * 109.47578 * 61.79711 * 22 21 20 45 45 H 1.08997 * 109.47056 * 294.71584 * 23 21 20 46 46 H 1.09002 * 109.46641 * 54.70929 * 23 21 20 47 47 H 1.08998 * 109.47420 * 174.70951 * 23 21 20 48 48 H 1.10198 * 108.72073 * 203.48510 * 24 2 1 49 49 H 1.10166 * 108.78219 * 318.64412 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5270 0.0000 0.0000 3 1 1.8475 1.0636 0.0000 4 6 2.0678 -0.6272 -1.2789 5 6 1.8622 -2.1422 -1.2549 6 1 0.8066 -2.3805 -1.1643 7 7 2.3750 -2.7167 -2.5100 8 6 1.3602 -2.6551 -3.5704 9 6 1.9283 -3.2603 -4.8556 10 6 0.8711 -3.1968 -5.9599 11 6 1.4394 -3.8014 -7.2453 12 6 0.3979 -3.7394 -8.3328 13 1 -0.5721 -3.3111 -8.1277 14 6 0.6834 -4.2294 -9.5896 15 7 1.8647 -4.7504 -9.8394 16 14 -0.6078 -4.1531 -10.9373 17 1 -0.4752 -2.8728 -11.6779 18 1 -0.4134 -5.2891 -11.8738 19 1 -1.9611 -4.2368 -10.3316 20 6 2.6464 -2.7242 -0.0807 21 6 2.1417 -2.1617 1.2434 22 6 3.1219 -2.6122 2.3486 23 6 0.7713 -2.7576 1.5773 24 6 2.0927 -0.6438 1.2511 25 1 -0.3633 -1.0254 -0.0695 26 1 -0.3634 0.4526 0.9226 27 1 -0.3633 0.5727 -0.8533 28 1 3.1340 -0.4096 -1.3719 29 1 1.5457 -0.2073 -2.1416 30 1 2.6950 -3.6633 -2.3702 31 1 1.0838 -1.6160 -3.7488 32 1 0.4788 -3.2178 -3.2629 33 1 2.2044 -4.2995 -4.6769 34 1 2.8098 -2.6980 -5.1634 35 1 -0.0103 -3.7594 -5.6519 36 1 0.5946 -2.1577 -6.1388 37 1 2.3205 -3.2385 -7.5531 38 1 1.7161 -4.8405 -7.0667 39 1 2.0658 -5.0949 -10.7236 40 1 2.5379 -3.8118 -0.0785 41 1 3.7055 -2.4805 -0.1987 42 1 2.7702 -2.2515 3.3152 43 1 3.1759 -3.7007 2.3647 44 1 4.1113 -2.2023 2.1459 45 1 0.0418 -2.4281 0.8375 46 1 0.8354 -3.8457 1.5646 47 1 0.4611 -2.4234 2.5673 48 1 3.1128 -0.2607 1.4157 49 1 1.4986 -0.3152 2.1187 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708253814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:44 Heat of formation + Delta-G solvation = -73.234457 kcal Electronic energy + Delta-G solvation = -20857.902958 eV Core-core repulsion = 18009.689783 eV Total energy + Delta-G solvation = -2848.213175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.73176 -37.64249 -35.91261 -34.87015 -34.09412 -31.42856 -28.96349 -28.44032 -27.40691 -27.16280 -25.98365 -23.06404 -22.66482 -21.66945 -20.99613 -18.82131 -18.43420 -17.04479 -16.57838 -16.47249 -15.90469 -15.72816 -15.29625 -15.06099 -14.76306 -14.47003 -14.26608 -14.18948 -13.90390 -13.56278 -13.37581 -13.10445 -13.00301 -12.84722 -12.60501 -12.53756 -12.38515 -12.28287 -12.14530 -12.05521 -11.88948 -11.82072 -11.57801 -11.39173 -11.34611 -11.26565 -11.06001 -10.80164 -10.72015 -10.56001 -9.31688 -8.20350 -6.32041 1.38935 1.40914 1.52035 2.40520 3.12216 3.12912 3.69928 3.72435 3.94665 4.10611 4.15109 4.21072 4.23986 4.31112 4.33900 4.47890 4.52663 4.54745 4.64129 4.67288 4.79981 4.82343 4.85816 4.88360 4.94243 4.96446 4.98184 5.08646 5.10571 5.13381 5.18587 5.19556 5.24259 5.25580 5.29945 5.35559 5.43556 5.45940 5.53400 5.54812 5.59531 5.63583 5.77305 5.86264 6.17462 6.25433 6.51701 6.85456 7.37288 8.91661 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037367 B = 0.002753 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.141910 B =10167.851756 C =10468.067867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.064 0.936 4 C -0.098 4.098 5 C 0.092 3.908 6 H 0.042 0.958 7 N -0.696 5.696 8 C 0.074 3.926 9 C -0.105 4.105 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.059 0.941 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.103 4.103 21 C -0.053 4.053 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.096 4.096 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.342 0.658 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.049 0.951 37 H -0.011 1.011 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 7.416 27.218 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.136 4.136 5 C -0.017 4.017 6 H 0.060 0.940 7 N -0.328 5.328 8 C -0.055 4.055 9 C -0.143 4.143 10 C -0.135 4.135 11 C -0.014 4.014 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.140 4.140 21 C -0.054 4.054 22 C -0.200 4.200 23 C -0.202 4.202 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.161 0.839 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.184 7.927 26.911 28.054 hybrid contribution -0.837 -0.873 -0.952 1.539 sum -1.021 7.054 25.958 26.919 Atomic orbital electron populations 1.21910 0.95071 1.01762 1.01765 1.20800 0.95790 0.99527 0.94098 0.91736 1.21405 1.00940 0.94341 0.96915 1.21422 0.96800 0.95235 0.88251 0.93965 1.60616 1.38697 1.26407 1.07040 1.21836 0.92562 1.00314 0.90791 1.21461 0.98404 1.00256 0.94147 1.21397 0.97696 0.99830 0.94553 1.19016 0.95099 0.94326 0.92924 1.21748 1.00400 1.39509 0.96681 0.92226 1.26032 0.97776 0.94741 1.01516 1.70105 1.23106 1.41612 1.22693 0.85424 0.79213 0.77941 0.78340 1.19687 1.20601 1.18676 1.21614 0.99848 0.99518 0.93070 1.20323 0.95903 0.94910 0.94237 1.22258 0.98573 1.01165 0.98014 1.22061 0.96164 1.00352 1.01625 1.21263 1.01379 0.93697 0.97017 0.92743 0.91727 0.93305 0.92298 0.93430 0.83917 0.91558 0.95298 0.92832 0.92743 0.93185 0.93221 0.99308 0.99197 0.92743 0.92119 0.91695 0.91984 0.92687 0.92761 0.92746 0.92933 0.91881 0.92266 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.87 71.88 0.64 -1.63 16 2 C -0.08 -1.33 2.60 -11.55 -0.03 -1.36 16 3 H 0.06 0.99 8.29 -1.26 -0.01 0.98 16 4 C -0.10 -2.00 4.84 30.35 0.15 -1.85 16 5 C 0.09 1.90 2.32 44.72 0.10 2.00 16 6 H 0.04 0.92 5.86 -2.60 -0.02 0.90 16 7 N -0.70 -17.35 6.29 -491.94 -3.09 -20.44 16 8 C 0.07 2.12 5.48 86.30 0.47 2.60 16 9 C -0.10 -3.70 5.47 30.60 0.17 -3.53 16 10 C -0.10 -4.13 5.15 30.60 0.16 -3.97 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.55 -32.16 9.11 25.60 0.23 -31.92 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 15 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 16 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 20 C -0.10 -1.76 3.79 30.32 0.11 -1.65 16 21 C -0.05 -0.74 0.71 -52.20 -0.04 -0.78 16 22 C -0.14 -1.73 8.09 72.47 0.59 -1.15 16 23 C -0.14 -1.97 8.01 72.02 0.58 -1.39 16 24 C -0.10 -1.32 4.13 29.78 0.12 -1.20 16 25 H 0.05 0.88 4.72 -2.38 -0.01 0.87 16 26 H 0.06 0.82 8.08 -2.39 -0.02 0.81 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 1.29 8.16 -2.27 -0.02 1.28 16 29 H 0.05 1.10 7.36 -2.26 -0.02 1.08 16 30 H 0.34 8.02 8.33 -89.70 -0.75 7.27 16 31 H 0.07 1.93 7.37 -2.39 -0.02 1.91 16 32 H 0.03 0.81 8.05 -2.39 -0.02 0.79 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 40 H 0.06 1.02 8.05 -2.22 -0.02 1.00 16 41 H 0.06 1.19 8.11 -2.22 -0.02 1.18 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 0.66 8.05 -2.39 -0.02 0.64 16 45 H 0.05 0.81 4.71 -2.39 -0.01 0.80 16 46 H 0.05 0.72 8.11 -2.39 -0.02 0.70 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.80 7.92 -1.74 -0.01 0.79 16 49 H 0.07 0.82 7.95 -1.76 -0.01 0.81 16 Total: -1.00 -64.14 366.00 3.23 -60.91 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.14 Total: 14.62 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 3.86 Total: -44.11 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.81 Total: -78.63 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.14 3.23 -60.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708253814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.321 kcal (2) G-P(sol) polarization free energy of solvation -64.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds