Wall clock time and date at job start Mon Mar 30 2020 08:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 109.47388 * 2 1 4 4 C 1.53000 * 109.47213 * 119.99365 * 2 1 3 5 5 C 1.50696 * 109.47630 * 186.45141 * 4 2 1 6 6 H 1.07999 * 119.99936 * 355.25700 * 5 4 2 7 7 C 1.37871 * 120.00130 * 175.26255 * 5 4 2 8 8 N 1.31518 * 120.00251 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46828 * 89.99782 * 9 7 5 11 11 H 1.48495 * 109.47287 * 209.99483 * 9 7 5 12 12 H 1.48494 * 109.46832 * 330.00157 * 9 7 5 13 13 N 1.46896 * 109.47580 * 239.99584 * 2 1 3 14 14 C 1.46901 * 110.99883 * 94.18450 * 13 2 1 15 15 C 1.47273 * 111.00054 * 330.23424 * 13 2 1 16 16 H 1.08680 * 108.81539 * 56.83270 * 15 13 2 17 17 C 1.52761 * 109.08831 * 296.37006 * 15 13 2 18 18 C 1.52207 * 110.75705 * 180.10011 * 17 15 13 19 19 H 1.11142 * 106.97328 * 169.68957 * 18 17 15 20 20 C 1.52833 * 110.63213 * 285.42350 * 18 17 15 21 21 C 1.51531 * 113.15427 * 51.64605 * 18 17 15 22 22 C 1.51852 * 115.71947 * 316.62358 * 21 18 17 23 23 C 1.53112 * 111.03205 * 279.97418 * 22 21 18 24 24 C 1.54409 * 108.01353 * 162.44889 * 22 21 18 25 25 C 1.52471 * 112.42415 * 43.72627 * 22 21 18 26 26 H 1.09004 * 109.46892 * 68.23853 * 1 2 3 27 27 H 1.09001 * 109.47337 * 188.23132 * 1 2 3 28 28 H 1.09002 * 109.47740 * 308.23728 * 1 2 3 29 29 H 1.09007 * 109.46862 * 66.44651 * 4 2 1 30 30 H 1.08996 * 109.47242 * 306.45282 * 4 2 1 31 31 H 0.96998 * 120.00263 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47394 * 52.63305 * 14 13 2 33 33 H 1.09002 * 109.47389 * 172.62963 * 14 13 2 34 34 H 1.08997 * 109.47327 * 292.63243 * 14 13 2 35 35 H 1.09330 * 109.22147 * 300.88944 * 17 15 13 36 36 H 1.09348 * 109.17376 * 59.39672 * 17 15 13 37 37 H 1.08991 * 109.46811 * 187.02573 * 20 18 17 38 38 H 1.09002 * 109.46896 * 307.02760 * 20 18 17 39 39 H 1.08998 * 109.47085 * 67.02678 * 20 18 17 40 40 H 1.10218 * 108.80408 * 194.09332 * 21 18 17 41 41 H 1.10238 * 108.74686 * 79.01931 * 21 18 17 42 42 H 1.09000 * 109.47415 * 185.10893 * 23 22 21 43 43 H 1.09003 * 109.47166 * 305.11601 * 23 22 21 44 44 H 1.09000 * 109.47023 * 65.11092 * 23 22 21 45 45 H 1.08997 * 109.47017 * 298.32645 * 24 22 21 46 46 H 1.09002 * 109.47311 * 58.33287 * 24 22 21 47 47 H 1.09003 * 109.47027 * 178.33122 * 24 22 21 48 48 H 1.09304 * 109.42655 * 186.72196 * 25 22 21 49 49 H 1.09304 * 109.41501 * 67.85692 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5384 -0.5844 1.3318 6 1 4.0818 -0.1047 0.5312 7 6 4.2158 -1.0719 2.4293 8 7 3.5541 -1.6558 3.4045 9 14 6.0734 -0.9030 2.5312 10 1 6.4181 0.3781 3.1984 11 1 6.6311 -2.0347 3.3144 12 1 6.6476 -0.9182 1.1618 13 7 2.0197 -0.6925 -1.1993 14 6 2.2895 0.2605 -2.2842 15 6 1.0704 -1.7315 -1.6335 16 1 0.1012 -1.2709 -1.8056 17 6 0.9662 -2.7989 -0.5457 18 6 -0.0059 -3.8954 -0.9574 19 1 0.1065 -4.7215 -0.2224 20 6 -1.4492 -3.4052 -0.8462 21 6 0.2876 -4.4676 -2.3295 22 6 0.6261 -3.4533 -3.4078 23 6 -0.6418 -2.8025 -3.9674 24 6 1.3122 -4.2032 -4.5702 25 6 1.5900 -2.3799 -2.9146 26 1 -0.3633 0.3810 -0.9545 27 1 -0.3634 -1.0171 0.1471 28 1 -0.3634 0.6360 0.8072 29 1 1.7739 -1.7767 1.1936 30 1 1.5854 -0.2782 2.1355 31 1 4.0306 -1.9984 4.1767 32 1 2.9455 1.0507 -1.9189 33 1 2.7724 -0.2587 -3.1122 34 1 1.3511 0.6966 -2.6265 35 1 1.9546 -3.2321 -0.3706 36 1 0.6216 -2.3339 0.3820 37 1 -2.1302 -4.2375 -1.0235 38 1 -1.6201 -3.0022 0.1521 39 1 -1.6265 -2.6263 -1.5877 40 1 -0.5824 -5.0569 -2.6622 41 1 1.1240 -5.1806 -2.2446 42 1 -0.3780 -2.1485 -4.7986 43 1 -1.3241 -3.5774 -4.3171 44 1 -1.1260 -2.2182 -3.1850 45 1 2.2361 -4.6586 -4.2137 46 1 0.6456 -4.9796 -4.9455 47 1 1.5393 -3.5006 -5.3720 48 1 1.7062 -1.6136 -3.6854 49 1 2.5670 -2.8301 -2.7208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708574948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:58 Heat of formation + Delta-G solvation = -15.066175 kcal Electronic energy + Delta-G solvation = -23006.694985 eV Core-core repulsion = 20161.004176 eV Total energy + Delta-G solvation = -2845.690809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99787 -37.04742 -33.84205 -32.91569 -31.12526 -29.63516 -27.59642 -27.21073 -26.45170 -25.87074 -24.48163 -23.16370 -21.20988 -20.15104 -18.71071 -17.61477 -16.23340 -15.40515 -15.22741 -14.50136 -14.27848 -14.20612 -14.03442 -13.58213 -13.40261 -13.11724 -12.83895 -12.46858 -12.25070 -12.11691 -11.89700 -11.80584 -11.68740 -11.43303 -11.26827 -11.25587 -10.93005 -10.85625 -10.76221 -10.53470 -10.48263 -10.39643 -10.29022 -10.25769 -9.83887 -9.49240 -9.23888 -9.17511 -8.74742 -8.11710 -7.30215 -5.81580 -3.77608 3.42191 3.48471 3.53440 4.50238 4.62114 4.80545 4.88476 5.03241 5.24888 5.36225 5.42739 5.54466 5.60827 5.61316 5.65794 5.72740 5.77931 5.79271 5.82697 5.87857 5.91321 5.93244 5.98512 6.03748 6.06957 6.09823 6.12595 6.21780 6.25542 6.31387 6.36692 6.42504 6.44587 6.52893 6.55027 6.64264 6.68507 6.74233 6.91165 7.12168 7.16327 7.66493 7.81674 8.03762 8.17313 8.21264 8.69512 9.27138 9.82562 11.30430 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.005902 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.782622 B = 4742.849798 C = 4787.666569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.060 0.940 4 C 0.020 3.980 5 C -0.483 4.483 6 H 0.056 0.944 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.885 3.115 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.515 5.515 14 C 0.027 3.973 15 C 0.092 3.908 16 H 0.041 0.959 17 C -0.116 4.116 18 C -0.086 4.086 19 H 0.059 0.941 20 C -0.148 4.148 21 C -0.094 4.094 22 C -0.055 4.055 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.102 4.102 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.015 0.985 31 H 0.256 0.744 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -3.174 -13.816 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.078 0.922 4 C -0.016 4.016 5 C -0.522 4.522 6 H 0.074 0.926 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.238 5.238 14 C -0.122 4.122 15 C -0.016 4.016 16 H 0.059 0.941 17 C -0.153 4.153 18 C -0.105 4.105 19 H 0.077 0.923 20 C -0.205 4.205 21 C -0.132 4.132 22 C -0.055 4.055 23 C -0.199 4.199 24 C -0.201 4.201 25 C -0.140 4.140 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.608 -3.499 -13.532 16.415 hybrid contribution 0.380 0.482 -0.087 0.620 sum -8.228 -3.018 -13.619 16.195 Atomic orbital electron populations 1.22653 0.99492 1.02291 0.99832 1.21954 0.90294 0.97514 0.92403 0.92220 1.19488 0.96100 0.96536 0.89520 1.21147 0.92338 1.35783 1.02954 0.92611 1.24974 0.97660 0.96131 0.96138 1.69956 1.35070 1.40714 1.08851 0.86695 0.86811 0.77250 0.77811 1.21142 1.21618 1.20033 1.62294 1.44918 1.12597 1.04028 1.22401 0.98694 0.95949 0.95176 1.21472 0.93534 0.92429 0.94190 0.94086 1.21915 0.99800 0.94809 0.98754 1.20834 0.95159 0.98531 0.96023 0.92279 1.21958 0.96089 1.00764 1.01708 1.21238 1.00994 0.97009 0.93943 1.20348 0.95224 0.95285 0.94673 1.22034 0.97180 1.00265 1.00431 1.22271 1.00220 0.99768 0.97866 1.21607 0.98831 0.96917 0.96650 0.94512 0.91500 0.93057 0.94522 0.96661 0.93462 0.91981 0.92143 0.97267 0.90783 0.89301 0.93471 0.92701 0.92592 0.92975 0.92641 0.93202 0.93178 0.92207 0.92718 0.93192 0.93026 0.92528 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 7.81 37.15 0.29 -2.92 16 2 C 0.09 1.77 2.22 -67.72 -0.15 1.62 16 3 H 0.06 1.27 7.55 -51.92 -0.39 0.87 16 4 C 0.02 0.52 4.26 -27.88 -0.12 0.40 16 5 C -0.48 -13.62 8.87 -34.44 -0.31 -13.93 16 6 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 9 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.52 -9.76 4.26 -227.09 -0.97 -10.73 16 14 C 0.03 0.43 8.80 60.07 0.53 0.96 16 15 C 0.09 1.49 1.23 -67.79 -0.08 1.41 16 16 H 0.04 0.66 4.13 -52.11 -0.21 0.44 16 17 C -0.12 -2.01 2.95 -27.26 -0.08 -2.09 16 18 C -0.09 -1.22 2.60 -91.85 -0.24 -1.45 16 19 H 0.06 0.85 8.29 -50.69 -0.42 0.43 16 20 C -0.15 -1.87 8.55 37.07 0.32 -1.55 16 21 C -0.09 -1.18 4.12 -28.06 -0.12 -1.29 16 22 C -0.05 -0.66 0.71 -154.57 -0.11 -0.77 16 23 C -0.14 -1.56 8.00 37.22 0.30 -1.26 16 24 C -0.14 -1.54 8.08 37.90 0.31 -1.23 16 25 C -0.10 -1.47 3.38 -27.16 -0.09 -1.56 16 26 H 0.04 0.58 7.40 -51.93 -0.38 0.19 16 27 H 0.07 1.14 4.47 -51.93 -0.23 0.91 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.96 4.54 -51.93 -0.24 0.72 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 33 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 34 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.07 1.50 8.08 -51.74 -0.42 1.09 16 36 H 0.09 1.73 3.50 -51.73 -0.18 1.55 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.06 0.69 4.92 -51.93 -0.26 0.43 16 40 H 0.05 0.58 7.94 -51.23 -0.41 0.18 16 41 H 0.05 0.70 7.94 -51.22 -0.41 0.30 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.06 0.70 4.61 -51.93 -0.24 0.46 16 45 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.77 6.26 -51.76 -0.32 0.45 16 49 H 0.07 1.11 8.11 -51.76 -0.42 0.69 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -29.30 344.55 -8.73 -38.03 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -9.02 Total: -0.81 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 0.35 Total: -22.32 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.23 Total: -37.36 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.30 -8.73 -38.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.967 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds