Wall clock time and date at job start Mon Mar 30 2020 08:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 109.47388 * 2 1 4 4 C 1.53000 * 109.47213 * 119.99365 * 2 1 3 5 5 C 1.50696 * 109.47630 * 186.45141 * 4 2 1 6 6 H 1.07999 * 119.99936 * 355.25700 * 5 4 2 7 7 C 1.37871 * 120.00130 * 175.26255 * 5 4 2 8 8 N 1.31518 * 120.00251 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46828 * 89.99782 * 9 7 5 11 11 H 1.48495 * 109.47287 * 209.99483 * 9 7 5 12 12 H 1.48494 * 109.46832 * 330.00157 * 9 7 5 13 13 N 1.46896 * 109.47580 * 239.99584 * 2 1 3 14 14 C 1.46901 * 110.99883 * 94.18450 * 13 2 1 15 15 C 1.47273 * 111.00054 * 330.23424 * 13 2 1 16 16 H 1.08680 * 108.81539 * 56.83270 * 15 13 2 17 17 C 1.52761 * 109.08831 * 296.37006 * 15 13 2 18 18 C 1.52207 * 110.75705 * 180.10011 * 17 15 13 19 19 H 1.11142 * 106.97328 * 169.68957 * 18 17 15 20 20 C 1.52833 * 110.63213 * 285.42350 * 18 17 15 21 21 C 1.51531 * 113.15427 * 51.64605 * 18 17 15 22 22 C 1.51852 * 115.71947 * 316.62358 * 21 18 17 23 23 C 1.53112 * 111.03205 * 279.97418 * 22 21 18 24 24 C 1.54409 * 108.01353 * 162.44889 * 22 21 18 25 25 C 1.52471 * 112.42415 * 43.72627 * 22 21 18 26 26 H 1.09004 * 109.46892 * 68.23853 * 1 2 3 27 27 H 1.09001 * 109.47337 * 188.23132 * 1 2 3 28 28 H 1.09002 * 109.47740 * 308.23728 * 1 2 3 29 29 H 1.09007 * 109.46862 * 66.44651 * 4 2 1 30 30 H 1.08996 * 109.47242 * 306.45282 * 4 2 1 31 31 H 0.96998 * 120.00263 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47394 * 52.63305 * 14 13 2 33 33 H 1.09002 * 109.47389 * 172.62963 * 14 13 2 34 34 H 1.08997 * 109.47327 * 292.63243 * 14 13 2 35 35 H 1.09330 * 109.22147 * 300.88944 * 17 15 13 36 36 H 1.09348 * 109.17376 * 59.39672 * 17 15 13 37 37 H 1.08991 * 109.46811 * 187.02573 * 20 18 17 38 38 H 1.09002 * 109.46896 * 307.02760 * 20 18 17 39 39 H 1.08998 * 109.47085 * 67.02678 * 20 18 17 40 40 H 1.10218 * 108.80408 * 194.09332 * 21 18 17 41 41 H 1.10238 * 108.74686 * 79.01931 * 21 18 17 42 42 H 1.09000 * 109.47415 * 185.10893 * 23 22 21 43 43 H 1.09003 * 109.47166 * 305.11601 * 23 22 21 44 44 H 1.09000 * 109.47023 * 65.11092 * 23 22 21 45 45 H 1.08997 * 109.47017 * 298.32645 * 24 22 21 46 46 H 1.09002 * 109.47311 * 58.33287 * 24 22 21 47 47 H 1.09003 * 109.47027 * 178.33122 * 24 22 21 48 48 H 1.09304 * 109.42655 * 186.72196 * 25 22 21 49 49 H 1.09304 * 109.41501 * 67.85692 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5384 -0.5844 1.3318 6 1 4.0818 -0.1047 0.5312 7 6 4.2158 -1.0719 2.4293 8 7 3.5541 -1.6558 3.4045 9 14 6.0734 -0.9030 2.5312 10 1 6.4181 0.3781 3.1984 11 1 6.6311 -2.0347 3.3144 12 1 6.6476 -0.9182 1.1618 13 7 2.0197 -0.6925 -1.1993 14 6 2.2895 0.2605 -2.2842 15 6 1.0704 -1.7315 -1.6335 16 1 0.1012 -1.2709 -1.8056 17 6 0.9662 -2.7989 -0.5457 18 6 -0.0059 -3.8954 -0.9574 19 1 0.1065 -4.7215 -0.2224 20 6 -1.4492 -3.4052 -0.8462 21 6 0.2876 -4.4676 -2.3295 22 6 0.6261 -3.4533 -3.4078 23 6 -0.6418 -2.8025 -3.9674 24 6 1.3122 -4.2032 -4.5702 25 6 1.5900 -2.3799 -2.9146 26 1 -0.3633 0.3810 -0.9545 27 1 -0.3634 -1.0171 0.1471 28 1 -0.3634 0.6360 0.8072 29 1 1.7739 -1.7767 1.1936 30 1 1.5854 -0.2782 2.1355 31 1 4.0306 -1.9984 4.1767 32 1 2.9455 1.0507 -1.9189 33 1 2.7724 -0.2587 -3.1122 34 1 1.3511 0.6966 -2.6265 35 1 1.9546 -3.2321 -0.3706 36 1 0.6216 -2.3339 0.3820 37 1 -2.1302 -4.2375 -1.0235 38 1 -1.6201 -3.0022 0.1521 39 1 -1.6265 -2.6263 -1.5877 40 1 -0.5824 -5.0569 -2.6622 41 1 1.1240 -5.1806 -2.2446 42 1 -0.3780 -2.1485 -4.7986 43 1 -1.3241 -3.5774 -4.3171 44 1 -1.1260 -2.2182 -3.1850 45 1 2.2361 -4.6586 -4.2137 46 1 0.6456 -4.9796 -4.9455 47 1 1.5393 -3.5006 -5.3720 48 1 1.7062 -1.6136 -3.6854 49 1 2.5670 -2.8301 -2.7208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708574948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:57 Heat of formation + Delta-G solvation = -30.861460 kcal Electronic energy + Delta-G solvation = -23007.379920 eV Core-core repulsion = 20161.004176 eV Total energy + Delta-G solvation = -2846.375744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25652 -38.37988 -35.06807 -34.86353 -32.80083 -30.94522 -29.25131 -28.37310 -27.38232 -27.07781 -25.83111 -25.10329 -22.70930 -21.28877 -20.20911 -18.82323 -18.32649 -16.86201 -16.63529 -16.30938 -15.66177 -15.31867 -15.14385 -14.87446 -14.76900 -14.33337 -14.18517 -13.86580 -13.55783 -13.41489 -13.25738 -13.17975 -12.99382 -12.92069 -12.66663 -12.57842 -12.40136 -12.37367 -12.20118 -12.06325 -11.87967 -11.76578 -11.58278 -11.41404 -11.13091 -11.09390 -10.98066 -10.67765 -10.58559 -10.21086 -8.76287 -8.06079 -6.08887 1.39999 1.41135 1.52170 2.48460 3.14192 3.29740 3.75977 3.80796 3.97375 4.21983 4.24898 4.26851 4.35252 4.38193 4.41939 4.52695 4.55141 4.62440 4.67971 4.70124 4.77218 4.87226 4.90941 4.91860 4.98510 4.99710 5.02404 5.11586 5.12630 5.14806 5.18235 5.25825 5.26940 5.28874 5.35804 5.40892 5.48158 5.52567 5.58067 5.62965 5.67386 5.72930 5.84097 6.01043 6.42036 6.59569 6.63897 7.04688 7.54964 9.05722 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.005902 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.782622 B = 4742.849798 C = 4787.666569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.050 0.950 4 C 0.025 3.975 5 C -0.493 4.493 6 H 0.051 0.949 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.543 5.543 14 C 0.029 3.971 15 C 0.098 3.902 16 H 0.054 0.946 17 C -0.107 4.107 18 C -0.083 4.083 19 H 0.048 0.952 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.054 4.054 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.097 4.097 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.024 0.976 30 H -0.017 1.017 31 H 0.257 0.743 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -3.204 -16.389 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 H 0.068 0.932 4 C -0.012 4.012 5 C -0.532 4.532 6 H 0.069 0.931 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.267 5.267 14 C -0.119 4.119 15 C -0.009 4.009 16 H 0.072 0.928 17 C -0.144 4.144 18 C -0.102 4.102 19 H 0.066 0.934 20 C -0.200 4.200 21 C -0.131 4.131 22 C -0.054 4.054 23 C -0.196 4.196 24 C -0.197 4.197 25 C -0.134 4.134 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.001 0.999 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.506 -3.520 -16.122 19.044 hybrid contribution 0.675 0.476 0.739 1.108 sum -8.831 -3.044 -15.384 17.997 Atomic orbital electron populations 1.22514 0.96938 1.02592 1.01205 1.21610 0.92318 0.96077 0.91316 0.93209 1.19379 0.94710 0.96171 0.90904 1.21478 0.93943 1.35119 1.02653 0.93081 1.25794 1.02403 0.95987 0.95935 1.70088 1.36873 1.41813 1.09457 0.85655 0.81189 0.77459 0.77952 1.20193 1.21286 1.19452 1.62137 1.46241 1.13785 1.04540 1.22394 0.99592 0.95364 0.94516 1.21472 0.93637 0.91354 0.94454 0.92800 1.21749 0.98213 0.96055 0.98417 1.20797 0.95433 0.96947 0.97045 0.93353 1.21911 0.94978 1.01766 1.01346 1.21229 1.01694 0.97179 0.92976 1.20332 0.95596 0.94562 0.94917 1.22006 0.96414 1.00741 1.00423 1.22227 0.99996 1.00176 0.97345 1.21572 0.98307 0.97756 0.95794 0.92046 0.91451 0.92964 0.95781 0.99862 0.93453 0.92896 0.90702 0.95305 0.95090 0.91994 0.91305 0.93866 0.91732 0.90667 0.93488 0.92329 0.91540 0.92825 0.93688 0.91601 0.92186 0.91298 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.96 7.81 71.98 0.56 -5.40 16 2 C 0.10 3.97 2.22 44.91 0.10 4.07 16 3 H 0.05 2.14 7.55 -2.38 -0.02 2.12 16 4 C 0.03 1.35 4.26 29.85 0.13 1.48 16 5 C -0.49 -28.73 8.87 25.60 0.23 -28.51 16 6 H 0.05 2.96 7.75 -2.91 -0.02 2.93 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 9 Si 0.95 46.64 29.54 68.60 2.03 48.66 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.54 -20.57 4.26 -872.37 -3.72 -24.29 16 14 C 0.03 0.91 8.80 127.69 1.12 2.04 16 15 C 0.10 3.14 1.23 44.66 0.06 3.19 16 16 H 0.05 1.61 4.13 -2.56 -0.01 1.60 16 17 C -0.11 -3.85 2.95 30.25 0.09 -3.76 16 18 C -0.08 -2.31 2.60 -11.59 -0.03 -2.34 16 19 H 0.05 1.42 8.29 -1.23 -0.01 1.41 16 20 C -0.14 -3.35 8.55 71.93 0.61 -2.74 16 21 C -0.09 -2.16 4.12 29.73 0.12 -2.04 16 22 C -0.05 -1.15 0.71 -52.22 -0.04 -1.19 16 23 C -0.14 -2.49 8.00 72.02 0.58 -1.92 16 24 C -0.14 -2.60 8.08 72.46 0.59 -2.02 16 25 C -0.10 -2.63 3.38 30.32 0.10 -2.53 16 26 H 0.06 1.79 7.40 -2.39 -0.02 1.78 16 27 H 0.07 2.30 4.47 -2.39 -0.01 2.29 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.02 1.34 4.54 -2.38 -0.01 1.33 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.05 1.72 7.87 -2.39 -0.02 1.70 16 33 H 0.07 2.09 6.37 -2.39 -0.02 2.08 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.03 1.34 8.08 -2.21 -0.02 1.32 16 36 H 0.06 2.55 3.50 -2.20 -0.01 2.54 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.10 7.92 -2.39 -0.02 1.08 16 39 H 0.06 1.41 4.92 -2.39 -0.01 1.40 16 40 H 0.07 1.43 7.94 -1.73 -0.01 1.42 16 41 H 0.05 1.16 7.94 -1.72 -0.01 1.14 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 44 H 0.05 1.04 4.61 -2.39 -0.01 1.03 16 45 H 0.04 0.92 8.09 -2.39 -0.02 0.90 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.70 6.26 -2.23 -0.01 1.69 16 49 H 0.04 1.45 8.11 -2.23 -0.02 1.43 16 Total: -1.00 -65.13 344.55 4.19 -60.94 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.91 Total: 14.72 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 4.68 Total: -41.53 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -3.43 Total: -82.79 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -65.13 4.19 -60.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.082 kcal (2) G-P(sol) polarization free energy of solvation -65.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds