Wall clock time and date at job start Mon Mar 30 2020 08:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46866 * 2 1 4 4 C 1.53006 * 109.46674 * 240.00702 * 2 1 3 5 5 C 1.50696 * 109.46687 * 174.33094 * 4 2 1 6 6 H 1.08005 * 120.00649 * 5.00988 * 5 4 2 7 7 C 1.37877 * 119.99921 * 185.01144 * 5 4 2 8 8 N 1.31517 * 120.00285 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99939 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47196 * 90.00196 * 9 7 5 11 11 H 1.48503 * 109.47445 * 210.00205 * 9 7 5 12 12 H 1.48499 * 109.47391 * 330.00029 * 9 7 5 13 13 N 1.46894 * 109.47463 * 120.00798 * 2 1 3 14 14 C 1.46902 * 110.99872 * 268.97572 * 13 2 1 15 15 C 1.46904 * 111.00066 * 32.92720 * 13 2 1 16 16 H 1.08994 * 109.47515 * 297.27981 * 15 13 2 17 17 C 1.52998 * 109.46670 * 57.28091 * 15 13 2 18 18 C 1.53008 * 109.46929 * 179.97438 * 17 15 13 19 19 H 1.09007 * 109.47034 * 59.99657 * 18 17 15 20 20 C 1.52997 * 109.46912 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.46725 * 299.99571 * 18 17 15 22 22 C 1.52998 * 109.47067 * 60.00514 * 21 18 17 23 23 C 1.52998 * 109.47682 * 59.99393 * 22 21 18 24 24 C 1.53004 * 109.47173 * 179.97438 * 22 21 18 25 25 C 1.52998 * 109.46904 * 299.99386 * 22 21 18 26 26 H 1.08991 * 109.47482 * 65.04033 * 1 2 3 27 27 H 1.09004 * 109.47066 * 185.04267 * 1 2 3 28 28 H 1.08998 * 109.46968 * 305.03704 * 1 2 3 29 29 H 1.08995 * 109.47096 * 294.32666 * 4 2 1 30 30 H 1.09000 * 109.47157 * 54.32987 * 4 2 1 31 31 H 0.97000 * 120.00053 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47110 * 189.11468 * 14 13 2 33 33 H 1.08999 * 109.47385 * 309.12227 * 14 13 2 34 34 H 1.09005 * 109.46891 * 69.12045 * 14 13 2 35 35 H 1.08999 * 109.47666 * 59.99523 * 17 15 13 36 36 H 1.09006 * 109.46800 * 299.99408 * 17 15 13 37 37 H 1.08999 * 109.47350 * 59.99872 * 20 18 17 38 38 H 1.09000 * 109.46767 * 180.02562 * 20 18 17 39 39 H 1.08998 * 109.47312 * 300.00004 * 20 18 17 40 40 H 1.09000 * 109.46730 * 179.97438 * 21 18 17 41 41 H 1.08994 * 109.47503 * 300.00168 * 21 18 17 42 42 H 1.09001 * 109.46643 * 60.00345 * 23 22 21 43 43 H 1.09000 * 109.47183 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47042 * 300.00120 * 23 22 21 45 45 H 1.09007 * 109.47007 * 59.99524 * 24 22 21 46 46 H 1.08995 * 109.47176 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.47222 * 300.00340 * 24 22 21 48 48 H 1.09004 * 109.47552 * 180.02562 * 25 22 21 49 49 H 1.09007 * 109.47027 * 300.00323 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5403 -0.6007 -1.3216 6 1 4.0843 -0.1346 -0.5133 7 6 4.2188 -1.0857 -2.4195 8 7 5.5283 -0.9811 -2.4824 9 14 3.2782 -1.8926 -3.8172 10 1 2.8984 -0.8629 -4.8176 11 1 4.1357 -2.9183 -4.4638 12 1 2.0528 -2.5381 -3.2816 13 7 2.0198 -0.6926 1.1993 14 6 2.2184 0.2507 2.3077 15 6 1.1100 -1.7783 1.5886 16 1 0.1367 -1.3616 1.8476 17 6 0.9524 -2.7547 0.4213 18 6 0.0053 -3.8860 0.8269 19 1 -0.9681 -3.4695 1.0863 20 6 -0.1528 -4.8620 -0.3406 21 6 0.5823 -4.6252 2.0358 22 6 0.7399 -3.6488 3.2031 23 6 -0.6263 -3.0642 3.5672 24 6 1.3164 -4.3883 4.4122 25 6 1.6870 -2.5177 2.7974 26 1 -0.3634 0.4336 -0.9316 27 1 -0.3633 -1.0237 0.0903 28 1 -0.3633 0.5900 0.8414 29 1 1.7619 -1.7739 -1.2002 30 1 1.5960 -0.2692 -2.1364 31 1 6.0057 -1.3226 -3.2546 32 1 2.7306 -0.2539 3.1268 33 1 2.8211 1.0919 1.9655 34 1 1.2505 0.6140 2.6534 35 1 1.9256 -3.1715 0.1621 36 1 0.5417 -2.2279 -0.4401 37 1 0.8204 -5.2785 -0.6004 38 1 -0.8278 -5.6676 -0.0518 39 1 -0.5640 -4.3351 -1.2016 40 1 -0.0926 -5.4308 2.3250 41 1 1.5556 -5.0416 1.7764 42 1 -1.3009 -3.8701 3.8562 43 1 -0.5139 -2.3690 4.3991 44 1 -1.0373 -2.5375 2.7060 45 1 2.2897 -4.8050 4.1531 46 1 1.4291 -3.6926 5.2437 47 1 0.6415 -5.1940 4.7010 48 1 1.7997 -1.8222 3.6292 49 1 2.6603 -2.9342 2.5381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708574954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:00 Heat of formation + Delta-G solvation = -7.789943 kcal Electronic energy + Delta-G solvation = -23060.347238 eV Core-core repulsion = 20214.971950 eV Total energy + Delta-G solvation = -2845.375288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20766 -37.19481 -33.92926 -32.84421 -31.25538 -29.91612 -27.85013 -27.28784 -26.48211 -25.94910 -24.56838 -22.89973 -20.89756 -20.18160 -18.66531 -18.25251 -16.53596 -15.54267 -15.21596 -14.91460 -14.35012 -14.19426 -14.02356 -13.47916 -13.29024 -13.16607 -12.55582 -12.49539 -12.36473 -12.25984 -12.08210 -11.96044 -11.76829 -11.63580 -11.46902 -11.39686 -11.04737 -10.94821 -10.73693 -10.68624 -10.60051 -10.47353 -10.35769 -9.89712 -9.81805 -9.62718 -9.50792 -9.26018 -8.79180 -8.31454 -7.39180 -5.84949 -3.76947 3.38674 3.46701 3.49276 4.43347 4.59512 4.77455 4.84745 5.01223 5.19528 5.37395 5.42491 5.49166 5.56291 5.58606 5.65143 5.67688 5.71487 5.72560 5.80222 5.85257 5.86383 5.89042 5.94937 5.99426 6.00064 6.04761 6.05835 6.12326 6.16803 6.26274 6.31780 6.36995 6.41540 6.43359 6.51267 6.56406 6.60156 6.61450 6.77238 6.90938 7.01188 7.19758 7.49724 7.90996 7.94636 8.05989 8.80371 9.27615 9.78901 11.29508 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.006912 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.922202 B = 4050.172576 C = 4524.070334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.096 3.904 3 H 0.067 0.933 4 C -0.021 4.021 5 C -0.483 4.483 6 H 0.075 0.925 7 C 0.060 3.940 8 N -0.911 5.911 9 Si 0.871 3.129 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.267 1.267 13 N -0.511 5.511 14 C 0.028 3.972 15 C 0.091 3.909 16 H 0.037 0.963 17 C -0.122 4.122 18 C -0.094 4.094 19 H 0.065 0.935 20 C -0.146 4.146 21 C -0.101 4.101 22 C -0.063 4.063 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.102 4.102 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.007 0.993 31 H 0.258 0.742 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.010 0.990 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 -5.386 11.327 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.058 4.058 5 C -0.522 4.522 6 H 0.093 0.907 7 C -0.139 4.139 8 N -0.552 5.552 9 Si 0.699 3.301 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.192 1.192 13 N -0.234 5.234 14 C -0.120 4.120 15 C -0.017 4.017 16 H 0.055 0.945 17 C -0.159 4.159 18 C -0.113 4.113 19 H 0.083 0.917 20 C -0.204 4.204 21 C -0.138 4.138 22 C -0.064 4.064 23 C -0.200 4.200 24 C -0.196 4.196 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.571 -5.626 11.101 17.689 hybrid contribution -1.089 0.011 -0.646 1.266 sum -13.660 -5.615 10.455 18.095 Atomic orbital electron populations 1.22793 0.99539 1.02162 1.00777 1.21696 0.90055 0.97736 0.91722 0.91474 1.20074 0.97788 0.96910 0.91023 1.21045 0.89767 1.36974 1.04373 0.90660 1.24998 0.94635 0.96222 0.98065 1.69916 1.06764 1.48331 1.30202 0.86925 0.80343 0.79631 0.83196 1.20775 1.21765 1.19180 1.62080 1.47200 1.10421 1.03712 1.22382 0.98685 0.96257 0.94714 1.21605 0.93518 0.92015 0.94574 0.94497 1.22250 1.00465 0.95201 0.97964 1.21222 0.99129 0.96167 0.94795 0.91711 1.21809 1.01645 0.98804 0.98098 1.21637 1.01013 0.96980 0.94177 1.20519 0.95367 0.95588 0.94929 1.21963 0.96441 1.00372 1.01201 1.21842 1.00720 0.99747 0.97305 1.21676 0.99031 0.96223 0.97001 0.92743 0.91233 0.94250 0.94274 0.97478 0.93215 0.92055 0.91760 0.97165 0.90255 0.89662 0.92520 0.93311 0.92832 0.92698 0.91778 0.93235 0.93193 0.92104 0.92608 0.92964 0.93091 0.92465 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 7.86 37.16 0.29 -2.89 16 2 C 0.10 1.90 2.20 -67.71 -0.15 1.75 16 3 H 0.07 1.39 7.56 -51.93 -0.39 1.00 16 4 C -0.02 -0.49 3.25 -27.88 -0.09 -0.58 16 5 C -0.48 -13.74 9.40 -34.44 -0.32 -14.06 16 6 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.68 13.96 55.43 0.77 -27.91 16 9 Si 0.87 22.08 27.37 -169.99 -4.65 17.42 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.43 6.69 56.52 0.38 -6.05 16 13 N -0.51 -9.55 4.27 -226.91 -0.97 -10.51 16 14 C 0.03 0.46 8.96 60.07 0.54 1.00 16 15 C 0.09 1.44 1.05 -67.71 -0.07 1.37 16 16 H 0.04 0.57 4.80 -51.93 -0.25 0.32 16 17 C -0.12 -2.02 2.39 -26.73 -0.06 -2.08 16 18 C -0.09 -1.26 2.44 -90.62 -0.22 -1.48 16 19 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 20 C -0.15 -1.89 9.19 37.16 0.34 -1.55 16 21 C -0.10 -1.23 4.01 -26.73 -0.11 -1.34 16 22 C -0.06 -0.75 0.77 -154.51 -0.12 -0.87 16 23 C -0.14 -1.55 7.78 37.16 0.29 -1.26 16 24 C -0.14 -1.46 8.47 37.16 0.31 -1.14 16 25 C -0.10 -1.45 3.74 -26.73 -0.10 -1.55 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.09 4.22 -51.93 -0.22 0.87 16 28 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.04 0.92 3.56 -51.93 -0.18 0.73 16 30 H 0.01 0.17 7.29 -51.93 -0.38 -0.21 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 33 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 34 H 0.01 0.15 8.13 -51.93 -0.42 -0.28 16 35 H 0.08 1.56 7.78 -51.93 -0.40 1.15 16 36 H 0.09 1.53 3.70 -51.93 -0.19 1.34 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.78 6.50 -51.93 -0.34 0.44 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -30.12 344.78 -8.40 -38.52 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -9.18 Total: 0.30 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 0.43 Total: -23.01 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.19 Total: -38.43 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.65 Total: 17.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.12 -8.40 -38.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.730 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds