Wall clock time and date at job start Mon Mar 30 2020 08:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46866 * 2 1 4 4 C 1.53006 * 109.46674 * 240.00702 * 2 1 3 5 5 C 1.50696 * 109.46687 * 174.33094 * 4 2 1 6 6 H 1.08005 * 120.00649 * 5.00988 * 5 4 2 7 7 C 1.37877 * 119.99921 * 185.01144 * 5 4 2 8 8 N 1.31517 * 120.00285 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99939 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47196 * 90.00196 * 9 7 5 11 11 H 1.48503 * 109.47445 * 210.00205 * 9 7 5 12 12 H 1.48499 * 109.47391 * 330.00029 * 9 7 5 13 13 N 1.46894 * 109.47463 * 120.00798 * 2 1 3 14 14 C 1.46902 * 110.99872 * 268.97572 * 13 2 1 15 15 C 1.46904 * 111.00066 * 32.92720 * 13 2 1 16 16 H 1.08994 * 109.47515 * 297.27981 * 15 13 2 17 17 C 1.52998 * 109.46670 * 57.28091 * 15 13 2 18 18 C 1.53008 * 109.46929 * 179.97438 * 17 15 13 19 19 H 1.09007 * 109.47034 * 59.99657 * 18 17 15 20 20 C 1.52997 * 109.46912 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.46725 * 299.99571 * 18 17 15 22 22 C 1.52998 * 109.47067 * 60.00514 * 21 18 17 23 23 C 1.52998 * 109.47682 * 59.99393 * 22 21 18 24 24 C 1.53004 * 109.47173 * 179.97438 * 22 21 18 25 25 C 1.52998 * 109.46904 * 299.99386 * 22 21 18 26 26 H 1.08991 * 109.47482 * 65.04033 * 1 2 3 27 27 H 1.09004 * 109.47066 * 185.04267 * 1 2 3 28 28 H 1.08998 * 109.46968 * 305.03704 * 1 2 3 29 29 H 1.08995 * 109.47096 * 294.32666 * 4 2 1 30 30 H 1.09000 * 109.47157 * 54.32987 * 4 2 1 31 31 H 0.97000 * 120.00053 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47110 * 189.11468 * 14 13 2 33 33 H 1.08999 * 109.47385 * 309.12227 * 14 13 2 34 34 H 1.09005 * 109.46891 * 69.12045 * 14 13 2 35 35 H 1.08999 * 109.47666 * 59.99523 * 17 15 13 36 36 H 1.09006 * 109.46800 * 299.99408 * 17 15 13 37 37 H 1.08999 * 109.47350 * 59.99872 * 20 18 17 38 38 H 1.09000 * 109.46767 * 180.02562 * 20 18 17 39 39 H 1.08998 * 109.47312 * 300.00004 * 20 18 17 40 40 H 1.09000 * 109.46730 * 179.97438 * 21 18 17 41 41 H 1.08994 * 109.47503 * 300.00168 * 21 18 17 42 42 H 1.09001 * 109.46643 * 60.00345 * 23 22 21 43 43 H 1.09000 * 109.47183 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47042 * 300.00120 * 23 22 21 45 45 H 1.09007 * 109.47007 * 59.99524 * 24 22 21 46 46 H 1.08995 * 109.47176 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.47222 * 300.00340 * 24 22 21 48 48 H 1.09004 * 109.47552 * 180.02562 * 25 22 21 49 49 H 1.09007 * 109.47027 * 300.00323 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5403 -0.6007 -1.3216 6 1 4.0843 -0.1346 -0.5133 7 6 4.2188 -1.0857 -2.4195 8 7 5.5283 -0.9811 -2.4824 9 14 3.2782 -1.8926 -3.8172 10 1 2.8984 -0.8629 -4.8176 11 1 4.1357 -2.9183 -4.4638 12 1 2.0528 -2.5381 -3.2816 13 7 2.0198 -0.6926 1.1993 14 6 2.2184 0.2507 2.3077 15 6 1.1100 -1.7783 1.5886 16 1 0.1367 -1.3616 1.8476 17 6 0.9524 -2.7547 0.4213 18 6 0.0053 -3.8860 0.8269 19 1 -0.9681 -3.4695 1.0863 20 6 -0.1528 -4.8620 -0.3406 21 6 0.5823 -4.6252 2.0358 22 6 0.7399 -3.6488 3.2031 23 6 -0.6263 -3.0642 3.5672 24 6 1.3164 -4.3883 4.4122 25 6 1.6870 -2.5177 2.7974 26 1 -0.3634 0.4336 -0.9316 27 1 -0.3633 -1.0237 0.0903 28 1 -0.3633 0.5900 0.8414 29 1 1.7619 -1.7739 -1.2002 30 1 1.5960 -0.2692 -2.1364 31 1 6.0057 -1.3226 -3.2546 32 1 2.7306 -0.2539 3.1268 33 1 2.8211 1.0919 1.9655 34 1 1.2505 0.6140 2.6534 35 1 1.9256 -3.1715 0.1621 36 1 0.5417 -2.2279 -0.4401 37 1 0.8204 -5.2785 -0.6004 38 1 -0.8278 -5.6676 -0.0518 39 1 -0.5640 -4.3351 -1.2016 40 1 -0.0926 -5.4308 2.3250 41 1 1.5556 -5.0416 1.7764 42 1 -1.3009 -3.8701 3.8562 43 1 -0.5139 -2.3690 4.3991 44 1 -1.0373 -2.5375 2.7060 45 1 2.2897 -4.8050 4.1531 46 1 1.4291 -3.6926 5.2437 47 1 0.6415 -5.1940 4.7010 48 1 1.7997 -1.8222 3.6292 49 1 2.6603 -2.9342 2.5381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708574954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:59 Heat of formation + Delta-G solvation = -25.102980 kcal Electronic energy + Delta-G solvation = -23061.097987 eV Core-core repulsion = 20214.971950 eV Total energy + Delta-G solvation = -2846.126038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41883 -38.48598 -35.10871 -34.78703 -32.95899 -31.17208 -29.66454 -28.13306 -27.44017 -27.11813 -25.92084 -24.74018 -22.40050 -21.30848 -20.11512 -19.32062 -18.74399 -16.92869 -16.62333 -16.03411 -15.91155 -15.58703 -15.20036 -14.97783 -14.51743 -14.32620 -14.29188 -13.80094 -13.64469 -13.50093 -13.40980 -13.23638 -13.03637 -12.89386 -12.64937 -12.52280 -12.41732 -12.31576 -12.25173 -12.08071 -11.82992 -11.67760 -11.56670 -11.51935 -11.35298 -11.16635 -10.96075 -10.76880 -10.71528 -10.32788 -8.78530 -8.15273 -6.11524 1.35350 1.37574 1.48737 2.43112 3.09611 3.24106 3.76202 3.79644 3.98860 4.14032 4.18911 4.27769 4.36512 4.42857 4.45636 4.51183 4.53994 4.63587 4.64880 4.69484 4.76533 4.79713 4.84719 4.93872 4.95675 4.99426 5.04086 5.06951 5.09206 5.13532 5.18286 5.20624 5.21573 5.25862 5.28177 5.31840 5.39684 5.41440 5.50655 5.55532 5.60594 5.68796 5.79746 5.82855 6.42350 6.55810 6.62139 6.95538 7.47529 9.02733 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.006912 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.922202 B = 4050.172576 C = 4524.070334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.049 0.951 4 C -0.018 4.018 5 C -0.481 4.481 6 H 0.030 0.970 7 C -0.006 4.006 8 N -0.962 5.962 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.246 1.246 13 N -0.545 5.545 14 C 0.032 3.968 15 C 0.095 3.905 16 H 0.056 0.944 17 C -0.117 4.117 18 C -0.088 4.088 19 H 0.084 0.916 20 C -0.147 4.147 21 C -0.099 4.099 22 C -0.060 4.060 23 C -0.139 4.139 24 C -0.136 4.136 25 C -0.097 4.097 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.009 0.991 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.775 -6.476 12.241 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.010 4.010 3 H 0.067 0.933 4 C -0.056 4.056 5 C -0.520 4.520 6 H 0.048 0.952 7 C -0.200 4.200 8 N -0.605 5.605 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.169 1.169 13 N -0.268 5.268 14 C -0.116 4.116 15 C -0.013 4.013 16 H 0.073 0.927 17 C -0.155 4.155 18 C -0.107 4.107 19 H 0.102 0.898 20 C -0.204 4.204 21 C -0.136 4.136 22 C -0.061 4.061 23 C -0.196 4.196 24 C -0.194 4.194 25 C -0.135 4.135 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.178 -6.710 12.033 21.250 hybrid contribution 0.131 0.394 -0.856 0.952 sum -16.047 -6.316 11.177 20.551 Atomic orbital electron populations 1.22645 0.96225 1.03206 1.02047 1.21472 0.92631 0.96092 0.90785 0.93302 1.20060 0.94291 0.97911 0.93308 1.21308 0.92416 1.35492 1.02740 0.95166 1.25918 0.95499 0.97248 1.01289 1.70091 1.08822 1.50268 1.31364 0.85813 0.79474 0.78747 0.79539 1.19635 1.21775 1.16947 1.61967 1.48869 1.11706 1.04291 1.22331 0.99701 0.95451 0.94080 1.21655 0.93796 0.91068 0.94764 0.92680 1.22133 0.99018 0.96368 0.97951 1.21192 0.98941 0.95168 0.95390 0.89822 1.21821 1.01345 0.99366 0.97871 1.21628 1.00545 0.97555 0.93892 1.20504 0.95688 0.94606 0.95265 1.21927 0.95469 1.01000 1.01216 1.21817 1.00537 1.00227 0.96787 1.21640 0.98241 0.97117 0.96514 0.92111 0.90342 0.92242 0.93608 0.97250 0.93255 0.91237 0.93342 0.94861 0.94427 0.90945 0.94120 0.90850 0.93168 0.90403 0.93608 0.91494 0.92603 0.92552 0.93647 0.92351 0.91368 0.91763 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.54 7.86 71.98 0.57 -4.97 16 2 C 0.10 3.89 2.20 44.92 0.10 3.99 16 3 H 0.05 2.07 7.56 -2.39 -0.02 2.05 16 4 C -0.02 -0.87 3.25 29.85 0.10 -0.77 16 5 C -0.48 -28.49 9.40 25.60 0.24 -28.25 16 6 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 7 C -0.01 -0.34 5.47 84.65 0.46 0.13 16 8 N -0.96 -63.09 13.96 21.45 0.30 -62.79 16 9 Si 0.94 46.18 27.37 68.60 1.88 48.06 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.25 -11.13 6.69 99.48 0.67 -10.46 16 13 N -0.54 -20.47 4.27 -871.80 -3.72 -24.19 16 14 C 0.03 1.04 8.96 127.69 1.14 2.19 16 15 C 0.09 2.90 1.05 44.91 0.05 2.94 16 16 H 0.06 1.51 4.80 -2.39 -0.01 1.50 16 17 C -0.12 -3.82 2.39 30.60 0.07 -3.74 16 18 C -0.09 -2.15 2.44 -10.79 -0.03 -2.18 16 19 H 0.08 1.78 6.43 -2.38 -0.02 1.76 16 20 C -0.15 -3.47 9.19 71.98 0.66 -2.81 16 21 C -0.10 -2.20 4.01 30.59 0.12 -2.08 16 22 C -0.06 -1.28 0.77 -52.18 -0.04 -1.32 16 23 C -0.14 -2.45 7.78 71.98 0.56 -1.89 16 24 C -0.14 -2.54 8.47 71.98 0.61 -1.93 16 25 C -0.10 -2.69 3.74 30.59 0.11 -2.57 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.24 4.22 -2.38 -0.01 2.23 16 28 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 29 H 0.05 2.14 3.56 -2.39 -0.01 2.14 16 30 H 0.01 0.44 7.29 -2.39 -0.02 0.42 16 31 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.07 2.07 6.57 -2.39 -0.02 2.06 16 33 H 0.05 1.67 7.81 -2.39 -0.02 1.65 16 34 H 0.03 0.90 8.13 -2.38 -0.02 0.89 16 35 H 0.04 1.52 7.78 -2.39 -0.02 1.50 16 36 H 0.07 2.51 3.70 -2.38 -0.01 2.50 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 1.05 4.81 -2.39 -0.01 1.04 16 45 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.06 1.66 6.50 -2.38 -0.02 1.64 16 49 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -68.16 344.78 4.03 -64.12 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.84 Total: 18.07 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 4.73 Total: -43.26 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -3.42 Total: -86.98 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.06 kcal Total: -68.16 4.03 -64.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.019 kcal (2) G-P(sol) polarization free energy of solvation -68.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds