Wall clock time and date at job start Mon Mar 30 2020 08:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46855 * 2 1 4 4 C 1.52999 * 109.46891 * 240.00337 * 2 1 3 5 5 C 1.50696 * 109.47309 * 63.25950 * 4 2 1 6 6 H 1.07995 * 120.00020 * 5.11001 * 5 4 2 7 7 C 1.37876 * 119.99978 * 185.10659 * 5 4 2 8 8 N 1.31521 * 120.00040 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00146 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47060 * 89.99774 * 9 7 5 11 11 H 1.48501 * 109.47114 * 210.00048 * 9 7 5 12 12 H 1.48506 * 109.46964 * 330.00046 * 9 7 5 13 13 N 1.46897 * 109.47012 * 120.00165 * 2 1 3 14 14 C 1.46897 * 111.00034 * 177.65119 * 13 2 1 15 15 C 1.47277 * 111.00187 * 301.60468 * 13 2 1 16 16 H 1.08678 * 108.81503 * 54.32408 * 15 13 2 17 17 C 1.52773 * 109.08617 * 293.86076 * 15 13 2 18 18 C 1.52212 * 110.73150 * 180.02562 * 17 15 13 19 19 H 1.11136 * 106.97089 * 169.77314 * 18 17 15 20 20 C 1.52828 * 110.62953 * 285.51667 * 18 17 15 21 21 C 1.51528 * 113.13430 * 51.73361 * 18 17 15 22 22 C 1.51858 * 115.71861 * 316.56997 * 21 18 17 23 23 C 1.54419 * 108.00343 * 162.41212 * 22 21 18 24 24 C 1.53104 * 111.03323 * 279.93449 * 22 21 18 25 25 C 1.52471 * 112.43715 * 43.70361 * 22 21 18 26 26 H 1.09001 * 109.47250 * 59.99906 * 1 2 3 27 27 H 1.08997 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47181 * 300.00337 * 1 2 3 29 29 H 1.09001 * 109.46659 * 183.26097 * 4 2 1 30 30 H 1.08998 * 109.46746 * 303.25565 * 4 2 1 31 31 H 0.96998 * 119.99564 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46979 * 177.76895 * 14 13 2 33 33 H 1.09007 * 109.46939 * 297.76462 * 14 13 2 34 34 H 1.08994 * 109.47296 * 57.76048 * 14 13 2 35 35 H 1.09336 * 109.18033 * 59.34582 * 17 15 13 36 36 H 1.09318 * 109.21499 * 300.82380 * 17 15 13 37 37 H 1.08998 * 109.46853 * 184.03397 * 20 18 17 38 38 H 1.08995 * 109.46959 * 304.03347 * 20 18 17 39 39 H 1.08995 * 109.46928 * 64.03657 * 20 18 17 40 40 H 1.10232 * 108.74250 * 78.97360 * 21 18 17 41 41 H 1.10213 * 108.80033 * 194.04225 * 21 18 17 42 42 H 1.08997 * 109.46703 * 60.00161 * 23 22 21 43 43 H 1.08994 * 109.46814 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47195 * 300.00236 * 23 22 21 45 45 H 1.09004 * 109.47185 * 59.99836 * 24 22 21 46 46 H 1.08997 * 109.46948 * 179.97438 * 24 22 21 47 47 H 1.09001 * 109.47266 * 300.00374 * 24 22 21 48 48 H 1.09305 * 109.43157 * 67.93887 * 25 22 21 49 49 H 1.09305 * 109.41507 * 186.80453 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6047 0.0344 -2.4784 6 1 1.0944 0.9808 -2.3779 7 6 1.8580 -0.4827 -3.7312 8 7 1.4785 0.1770 -4.8038 9 14 2.7401 -2.1201 -3.9050 10 1 1.7426 -3.2200 -3.9250 11 1 3.5161 -2.1324 -5.1711 12 1 3.6629 -2.3096 -2.7569 13 7 2.0197 -0.6925 1.1994 14 6 3.4870 -0.7610 1.2056 15 6 1.5163 -0.0473 2.4239 16 1 0.4325 0.0122 2.3686 17 6 2.1206 1.3513 2.5362 18 6 1.6245 2.0533 3.7924 19 1 2.2359 2.9735 3.9127 20 6 0.1766 2.5102 3.6177 21 6 1.8031 1.2238 5.0479 22 6 1.4301 -0.2433 4.9270 23 6 2.0774 -0.9991 6.1078 24 6 -0.0849 -0.4358 5.0351 25 6 1.9455 -0.8704 3.6364 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1284 -0.7721 -1.2205 30 1 1.6297 -1.7306 -1.2789 31 1 1.6571 -0.1867 -5.6852 32 1 3.8243 -1.2432 2.1231 33 1 3.8275 -1.3379 0.3456 34 1 3.8980 0.2471 1.1526 35 1 1.8399 1.9356 1.6558 36 1 3.2104 1.2709 2.5669 37 1 -0.1358 3.0719 4.4980 38 1 0.1001 3.1455 2.7353 39 1 -0.4670 1.6391 3.4952 40 1 2.8548 1.2924 5.3710 41 1 1.2057 1.6726 5.8581 42 1 1.7046 -0.5921 7.0477 43 1 1.8239 -2.0573 6.0445 44 1 3.1601 -0.8812 6.0649 45 1 -0.5794 0.1172 4.2364 46 1 -0.3239 -1.4954 4.9448 47 1 -0.4302 -0.0660 6.0006 48 1 3.0368 -0.9237 3.6685 49 1 1.5497 -1.8848 3.5420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708574959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:02 Heat of formation + Delta-G solvation = -26.291482 kcal Electronic energy + Delta-G solvation = -22502.582922 eV Core-core repulsion = 19656.405347 eV Total energy + Delta-G solvation = -2846.177575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13957 -37.16267 -34.01125 -33.23860 -31.51113 -29.34149 -27.89742 -27.56696 -26.63460 -26.16513 -24.73742 -23.25405 -21.02154 -20.51012 -18.58935 -17.78090 -16.91929 -15.76050 -15.12570 -14.62282 -14.48157 -14.32812 -14.05541 -13.83068 -13.55581 -13.46652 -13.04615 -12.67773 -12.59541 -12.31407 -12.14192 -11.93011 -11.70577 -11.60107 -11.49977 -11.31483 -11.13194 -11.00239 -10.86186 -10.76881 -10.62093 -10.53543 -10.37317 -10.05025 -9.89606 -9.76497 -9.68001 -9.39516 -9.08493 -8.48457 -7.62028 -6.00848 -3.97643 3.34639 3.41661 3.46650 4.33201 4.49297 4.56547 4.69313 4.84619 5.01764 5.09991 5.16625 5.28004 5.33543 5.45929 5.50112 5.55619 5.59913 5.62360 5.70885 5.74745 5.77705 5.85241 5.85501 5.91401 5.96861 5.97926 6.03932 6.07246 6.14238 6.16825 6.21018 6.28888 6.32238 6.37590 6.42006 6.43169 6.56568 6.61411 6.73744 6.87853 7.10850 7.23080 7.42001 7.68655 7.76850 7.94467 8.57898 9.03731 9.62354 11.12457 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.004816 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.432574 B = 5812.202687 C = 6197.647575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.094 3.906 3 H 0.034 0.966 4 C -0.004 4.004 5 C -0.514 4.514 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.536 5.536 14 C 0.019 3.981 15 C 0.084 3.916 16 H 0.088 0.912 17 C -0.147 4.147 18 C -0.079 4.079 19 H 0.054 0.946 20 C -0.150 4.150 21 C -0.096 4.096 22 C -0.056 4.056 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.099 4.099 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.014 0.986 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.060 0.940 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 0.382 21.561 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.042 4.042 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.259 5.259 14 C -0.129 4.129 15 C -0.024 4.024 16 H 0.106 0.894 17 C -0.186 4.186 18 C -0.098 4.098 19 H 0.073 0.927 20 C -0.207 4.207 21 C -0.133 4.133 22 C -0.056 4.056 23 C -0.201 4.201 24 C -0.201 4.201 25 C -0.136 4.136 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.017 -0.114 21.346 21.347 hybrid contribution 0.874 0.049 -0.269 0.915 sum 0.891 -0.065 21.077 21.096 Atomic orbital electron populations 1.21780 0.95133 1.01548 1.00487 1.21604 0.95110 0.95419 0.89218 0.94762 1.19650 0.95937 0.96265 0.92361 1.21092 1.37815 1.07319 0.89022 0.91011 1.24985 0.95312 0.97203 0.95868 1.69917 1.47645 1.38987 0.97886 0.86785 0.80399 0.84740 0.77385 1.20299 1.21605 1.19118 1.62487 1.08742 1.52745 1.01975 1.22443 0.88758 0.99862 1.01876 1.21638 1.00152 0.90861 0.89784 0.89428 1.22113 1.00793 0.98231 0.97446 1.20694 0.96823 0.97723 0.94568 0.92714 1.21953 0.96402 1.01127 1.01174 1.21249 1.01109 0.94055 0.96917 1.20353 0.95606 0.94525 0.95123 1.22271 1.00223 1.00121 0.97534 1.22046 0.94994 1.01656 1.01422 1.21551 1.00600 0.99160 0.92339 0.91144 0.92868 0.94719 0.96737 0.96222 0.92831 0.92269 0.91070 0.95854 0.91532 0.92088 0.93157 0.92704 0.92100 0.92851 0.92565 0.93073 0.92707 0.92990 0.91991 0.92717 0.93165 0.92154 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.71 37.16 0.32 -2.20 16 2 C 0.09 1.89 1.80 -67.71 -0.12 1.77 16 3 H 0.03 0.73 6.50 -51.93 -0.34 0.39 16 4 C 0.00 -0.11 3.33 -27.89 -0.09 -0.20 16 5 C -0.51 -14.54 8.85 -34.44 -0.30 -14.84 16 6 H 0.07 2.17 7.38 -52.49 -0.39 1.79 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 22.10 27.37 -169.99 -4.65 17.44 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.48 6.69 56.52 0.38 -6.10 16 13 N -0.54 -9.25 4.62 -227.08 -1.05 -10.30 16 14 C 0.02 0.31 8.20 60.06 0.49 0.80 16 15 C 0.08 1.19 1.81 -67.78 -0.12 1.06 16 16 H 0.09 1.29 4.16 -52.11 -0.22 1.07 16 17 C -0.15 -1.98 3.96 -27.25 -0.11 -2.08 16 18 C -0.08 -0.88 2.60 -91.85 -0.24 -1.12 16 19 H 0.05 0.60 8.29 -50.70 -0.42 0.17 16 20 C -0.15 -1.60 8.89 37.07 0.33 -1.27 16 21 C -0.10 -0.95 4.12 -28.06 -0.12 -1.07 16 22 C -0.06 -0.56 0.71 -154.56 -0.11 -0.67 16 23 C -0.14 -1.28 8.10 37.90 0.31 -0.98 16 24 C -0.14 -1.40 8.01 37.21 0.30 -1.11 16 25 C -0.10 -1.20 3.60 -27.16 -0.10 -1.29 16 26 H 0.07 1.48 6.94 -51.93 -0.36 1.12 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.57 6.26 -51.93 -0.32 0.24 16 29 H 0.01 0.35 5.65 -51.93 -0.29 0.06 16 30 H 0.02 0.49 7.29 -51.93 -0.38 0.11 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.06 0.83 6.00 -51.93 -0.31 0.51 16 33 H 0.07 1.27 6.32 -51.92 -0.33 0.94 16 34 H 0.02 0.37 6.58 -51.93 -0.34 0.03 16 35 H 0.07 1.02 6.46 -51.74 -0.33 0.68 16 36 H 0.06 0.84 6.43 -51.75 -0.33 0.51 16 37 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 38 H 0.05 0.62 8.13 -51.93 -0.42 0.19 16 39 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 40 H 0.05 0.52 7.92 -51.23 -0.41 0.12 16 41 H 0.06 0.51 7.97 -51.24 -0.41 0.11 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.46 8.05 -51.93 -0.42 0.04 16 45 H 0.06 0.64 4.62 -51.93 -0.24 0.40 16 46 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.74 6.22 -51.76 -0.32 0.42 16 49 H 0.07 0.86 8.11 -51.76 -0.42 0.44 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -29.41 342.20 -8.37 -37.79 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.95 Total: -1.55 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 0.34 Total: -21.34 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.27 Total: -37.50 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.65 Total: 17.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.41 -8.37 -37.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.495 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds