Wall clock time and date at job start Mon Mar 30 2020 08:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46855 * 2 1 4 4 C 1.52999 * 109.46891 * 240.00337 * 2 1 3 5 5 C 1.50696 * 109.47309 * 63.25950 * 4 2 1 6 6 H 1.07995 * 120.00020 * 5.11001 * 5 4 2 7 7 C 1.37876 * 119.99978 * 185.10659 * 5 4 2 8 8 N 1.31521 * 120.00040 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00146 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47060 * 89.99774 * 9 7 5 11 11 H 1.48501 * 109.47114 * 210.00048 * 9 7 5 12 12 H 1.48506 * 109.46964 * 330.00046 * 9 7 5 13 13 N 1.46897 * 109.47012 * 120.00165 * 2 1 3 14 14 C 1.46897 * 111.00034 * 177.65119 * 13 2 1 15 15 C 1.47277 * 111.00187 * 301.60468 * 13 2 1 16 16 H 1.08678 * 108.81503 * 54.32408 * 15 13 2 17 17 C 1.52773 * 109.08617 * 293.86076 * 15 13 2 18 18 C 1.52212 * 110.73150 * 180.02562 * 17 15 13 19 19 H 1.11136 * 106.97089 * 169.77314 * 18 17 15 20 20 C 1.52828 * 110.62953 * 285.51667 * 18 17 15 21 21 C 1.51528 * 113.13430 * 51.73361 * 18 17 15 22 22 C 1.51858 * 115.71861 * 316.56997 * 21 18 17 23 23 C 1.54419 * 108.00343 * 162.41212 * 22 21 18 24 24 C 1.53104 * 111.03323 * 279.93449 * 22 21 18 25 25 C 1.52471 * 112.43715 * 43.70361 * 22 21 18 26 26 H 1.09001 * 109.47250 * 59.99906 * 1 2 3 27 27 H 1.08997 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47181 * 300.00337 * 1 2 3 29 29 H 1.09001 * 109.46659 * 183.26097 * 4 2 1 30 30 H 1.08998 * 109.46746 * 303.25565 * 4 2 1 31 31 H 0.96998 * 119.99564 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46979 * 177.76895 * 14 13 2 33 33 H 1.09007 * 109.46939 * 297.76462 * 14 13 2 34 34 H 1.08994 * 109.47296 * 57.76048 * 14 13 2 35 35 H 1.09336 * 109.18033 * 59.34582 * 17 15 13 36 36 H 1.09318 * 109.21499 * 300.82380 * 17 15 13 37 37 H 1.08998 * 109.46853 * 184.03397 * 20 18 17 38 38 H 1.08995 * 109.46959 * 304.03347 * 20 18 17 39 39 H 1.08995 * 109.46928 * 64.03657 * 20 18 17 40 40 H 1.10232 * 108.74250 * 78.97360 * 21 18 17 41 41 H 1.10213 * 108.80033 * 194.04225 * 21 18 17 42 42 H 1.08997 * 109.46703 * 60.00161 * 23 22 21 43 43 H 1.08994 * 109.46814 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47195 * 300.00236 * 23 22 21 45 45 H 1.09004 * 109.47185 * 59.99836 * 24 22 21 46 46 H 1.08997 * 109.46948 * 179.97438 * 24 22 21 47 47 H 1.09001 * 109.47266 * 300.00374 * 24 22 21 48 48 H 1.09305 * 109.43157 * 67.93887 * 25 22 21 49 49 H 1.09305 * 109.41507 * 186.80453 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6047 0.0344 -2.4784 6 1 1.0944 0.9808 -2.3779 7 6 1.8580 -0.4827 -3.7312 8 7 1.4785 0.1770 -4.8038 9 14 2.7401 -2.1201 -3.9050 10 1 1.7426 -3.2200 -3.9250 11 1 3.5161 -2.1324 -5.1711 12 1 3.6629 -2.3096 -2.7569 13 7 2.0197 -0.6925 1.1994 14 6 3.4870 -0.7610 1.2056 15 6 1.5163 -0.0473 2.4239 16 1 0.4325 0.0122 2.3686 17 6 2.1206 1.3513 2.5362 18 6 1.6245 2.0533 3.7924 19 1 2.2359 2.9735 3.9127 20 6 0.1766 2.5102 3.6177 21 6 1.8031 1.2238 5.0479 22 6 1.4301 -0.2433 4.9270 23 6 2.0774 -0.9991 6.1078 24 6 -0.0849 -0.4358 5.0351 25 6 1.9455 -0.8704 3.6364 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1284 -0.7721 -1.2205 30 1 1.6297 -1.7306 -1.2789 31 1 1.6571 -0.1867 -5.6852 32 1 3.8243 -1.2432 2.1231 33 1 3.8275 -1.3379 0.3456 34 1 3.8980 0.2471 1.1526 35 1 1.8399 1.9356 1.6558 36 1 3.2104 1.2709 2.5669 37 1 -0.1358 3.0719 4.4980 38 1 0.1001 3.1455 2.7353 39 1 -0.4670 1.6391 3.4952 40 1 2.8548 1.2924 5.3710 41 1 1.2057 1.6726 5.8581 42 1 1.7046 -0.5921 7.0477 43 1 1.8239 -2.0573 6.0445 44 1 3.1601 -0.8812 6.0649 45 1 -0.5794 0.1172 4.2364 46 1 -0.3239 -1.4954 4.9448 47 1 -0.4302 -0.0660 6.0006 48 1 3.0368 -0.9237 3.6685 49 1 1.5497 -1.8848 3.5420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708574959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:02 Heat of formation + Delta-G solvation = -42.826820 kcal Electronic energy + Delta-G solvation = -22503.299948 eV Core-core repulsion = 19656.405347 eV Total energy + Delta-G solvation = -2846.894601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20997 -38.45311 -35.29182 -34.76952 -33.31501 -30.59243 -29.67703 -28.41476 -27.37853 -27.13380 -26.10067 -25.12850 -22.27253 -21.64422 -20.01100 -19.15500 -18.66202 -16.94723 -16.43612 -16.24820 -15.74215 -15.48910 -15.23718 -15.14823 -14.74351 -14.60149 -14.45474 -14.06265 -13.82247 -13.56302 -13.26351 -13.13010 -12.97191 -12.80835 -12.68980 -12.63254 -12.52320 -12.31048 -12.20912 -11.95148 -11.84115 -11.67010 -11.63533 -11.52630 -11.44225 -11.18039 -10.94808 -10.82053 -10.76205 -10.71495 -9.01899 -8.27633 -6.29600 1.35604 1.36070 1.48757 2.36676 3.05604 3.08148 3.68910 3.80962 3.89269 4.14079 4.18418 4.24657 4.27195 4.29258 4.33835 4.47958 4.56138 4.61558 4.66106 4.70144 4.71665 4.84910 4.87288 4.91315 4.95053 4.99380 5.01418 5.06724 5.08248 5.14280 5.16844 5.17377 5.21440 5.24439 5.26509 5.35055 5.39108 5.45167 5.49979 5.54103 5.58834 5.61619 5.67324 5.72183 6.20518 6.37646 6.41333 6.77127 7.33982 8.88918 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.004816 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.432574 B = 5812.202687 C = 6197.647575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.103 3.897 3 H 0.019 0.981 4 C 0.002 3.998 5 C -0.518 4.518 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.252 1.252 13 N -0.541 5.541 14 C 0.020 3.980 15 C 0.087 3.913 16 H 0.083 0.917 17 C -0.142 4.142 18 C -0.076 4.076 19 H 0.058 0.942 20 C -0.149 4.149 21 C -0.094 4.094 22 C -0.053 4.053 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.092 4.092 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.265 0.735 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -0.833 24.374 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.005 4.005 3 H 0.037 0.963 4 C -0.036 4.036 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.770 3.230 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.176 1.176 13 N -0.264 5.264 14 C -0.128 4.128 15 C -0.021 4.021 16 H 0.101 0.899 17 C -0.181 4.181 18 C -0.095 4.095 19 H 0.077 0.923 20 C -0.206 4.206 21 C -0.132 4.132 22 C -0.054 4.054 23 C -0.198 4.198 24 C -0.201 4.201 25 C -0.130 4.130 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.634 -1.325 24.188 24.232 hybrid contribution 0.645 0.516 -1.127 1.397 sum 1.278 -0.809 23.061 23.110 Atomic orbital electron populations 1.21662 0.94521 1.01485 1.00431 1.21318 0.95567 0.94293 0.89363 0.96296 1.19536 0.95826 0.95754 0.92439 1.21356 1.37001 1.06349 0.90982 0.94669 1.25893 0.96276 1.01253 0.95447 1.70060 1.49401 1.41141 0.98575 0.85718 0.79509 0.79848 0.77911 1.19335 1.21021 1.17553 1.62443 1.09475 1.52617 1.01883 1.22455 0.88049 0.99765 1.02529 1.21692 0.99741 0.91507 0.89176 0.89950 1.22045 1.00542 0.97654 0.97820 1.20677 0.97008 0.97874 0.93947 0.92305 1.21949 0.96132 1.01036 1.01466 1.21229 1.01845 0.93705 0.96395 1.20327 0.95944 0.94669 0.94423 1.22229 1.00242 1.00007 0.97307 1.22047 0.94596 1.01565 1.01899 1.21512 1.00649 0.98593 0.92266 0.93944 0.92804 0.92034 0.96674 0.96470 0.92601 0.89545 0.92727 0.96055 0.94082 0.92388 0.91383 0.93958 0.92328 0.92294 0.91020 0.91859 0.92641 0.92811 0.92871 0.92827 0.91746 0.92021 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 8.71 71.98 0.63 -4.17 16 2 C 0.10 4.20 1.80 44.92 0.08 4.28 16 3 H 0.02 0.84 6.50 -2.39 -0.02 0.82 16 4 C 0.00 0.10 3.33 29.85 0.10 0.20 16 5 C -0.52 -30.27 8.85 25.60 0.23 -30.04 16 6 H 0.04 2.25 7.38 -2.91 -0.02 2.23 16 7 C 0.01 0.47 5.47 84.65 0.46 0.93 16 8 N -0.95 -60.36 13.96 21.45 0.30 -60.07 16 9 Si 0.95 45.64 27.37 68.60 1.88 47.52 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.25 -11.45 6.69 99.48 0.67 -10.79 16 13 N -0.54 -18.19 4.62 -872.34 -4.03 -22.22 16 14 C 0.02 0.63 8.20 127.69 1.05 1.67 16 15 C 0.09 2.33 1.81 44.67 0.08 2.41 16 16 H 0.08 2.32 4.16 -2.56 -0.01 2.31 16 17 C -0.14 -3.69 3.96 30.26 0.12 -3.57 16 18 C -0.08 -1.54 2.60 -11.59 -0.03 -1.57 16 19 H 0.06 1.16 8.29 -1.23 -0.01 1.15 16 20 C -0.15 -2.94 8.89 71.93 0.64 -2.30 16 21 C -0.09 -1.58 4.12 29.74 0.12 -1.46 16 22 C -0.05 -0.91 0.71 -52.22 -0.04 -0.95 16 23 C -0.14 -2.02 8.10 72.46 0.59 -1.43 16 24 C -0.14 -2.40 8.01 72.02 0.58 -1.82 16 25 C -0.09 -2.02 3.60 30.32 0.11 -1.91 16 26 H 0.04 1.86 6.94 -2.39 -0.02 1.84 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.02 6.26 -2.39 -0.01 2.00 16 29 H 0.02 0.73 5.65 -2.39 -0.01 0.72 16 30 H 0.02 0.84 7.29 -2.39 -0.02 0.82 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.09 2.21 6.00 -2.39 -0.01 2.20 16 33 H 0.05 1.88 6.32 -2.38 -0.02 1.87 16 34 H 0.02 0.67 6.58 -2.39 -0.02 0.65 16 35 H 0.04 1.27 6.46 -2.21 -0.01 1.26 16 36 H 0.06 1.53 6.43 -2.22 -0.01 1.52 16 37 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 38 H 0.04 0.92 8.13 -2.39 -0.02 0.91 16 39 H 0.06 1.18 4.81 -2.39 -0.01 1.17 16 40 H 0.06 0.95 7.92 -1.73 -0.01 0.93 16 41 H 0.07 1.03 7.97 -1.74 -0.01 1.02 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.05 0.76 8.05 -2.39 -0.02 0.74 16 45 H 0.05 0.98 4.62 -2.39 -0.01 0.97 16 46 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 47 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.06 1.34 6.22 -2.22 -0.01 1.32 16 49 H 0.06 1.45 8.11 -2.23 -0.02 1.43 16 Total: -1.00 -64.27 342.20 3.74 -60.53 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.88 Total: 13.97 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 4.71 Total: -39.73 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.73 Total: -82.28 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -64.27 3.74 -60.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.699 kcal (2) G-P(sol) polarization free energy of solvation -64.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds