Wall clock time and date at job start Mon Mar 30 2020 08:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47576 * 2 1 4 4 C 1.53005 * 109.47250 * 120.00189 * 2 1 3 5 5 C 1.50703 * 109.47203 * 184.99270 * 4 2 1 6 6 H 1.07996 * 119.99881 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99923 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47282 * 60.00007 * 9 7 5 11 11 H 1.48503 * 109.47084 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46841 * 299.99776 * 9 7 5 13 13 N 1.46905 * 109.46846 * 239.99716 * 2 1 3 14 14 C 1.46898 * 111.00303 * 306.04822 * 13 2 1 15 15 C 1.46902 * 110.99603 * 70.00516 * 13 2 1 16 16 H 1.09004 * 109.46739 * 299.99369 * 15 13 2 17 17 C 1.52996 * 109.47341 * 59.99569 * 15 13 2 18 18 C 1.52997 * 109.46975 * 179.97438 * 17 15 13 19 19 H 1.09000 * 109.47140 * 60.00388 * 18 17 15 20 20 C 1.53006 * 109.47164 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47592 * 300.00042 * 18 17 15 22 22 C 1.53006 * 109.47000 * 59.99968 * 21 18 17 23 23 C 1.53002 * 109.46886 * 59.99999 * 22 21 18 24 24 C 1.52993 * 109.47478 * 180.02562 * 22 21 18 25 25 C 1.52997 * 109.46974 * 300.00410 * 22 21 18 26 26 H 1.09001 * 109.46874 * 300.00145 * 1 2 3 27 27 H 1.08993 * 109.47251 * 59.99571 * 1 2 3 28 28 H 1.09006 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46931 * 305.00172 * 4 2 1 30 30 H 1.09001 * 109.47082 * 65.00045 * 4 2 1 31 31 H 0.97000 * 120.00240 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47408 * 183.95021 * 14 13 2 33 33 H 1.08999 * 109.46863 * 303.95396 * 14 13 2 34 34 H 1.08997 * 109.46825 * 63.95051 * 14 13 2 35 35 H 1.09000 * 109.46870 * 60.00190 * 17 15 13 36 36 H 1.09001 * 109.47372 * 300.00340 * 17 15 13 37 37 H 1.09001 * 109.46801 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46998 * 299.99705 * 20 18 17 39 39 H 1.09000 * 109.47050 * 59.99996 * 20 18 17 40 40 H 1.08993 * 109.47839 * 179.97438 * 21 18 17 41 41 H 1.09000 * 109.47160 * 300.00333 * 21 18 17 42 42 H 1.08996 * 109.46698 * 60.00234 * 23 22 21 43 43 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47142 * 300.00180 * 23 22 21 45 45 H 1.09004 * 109.46998 * 59.99563 * 24 22 21 46 46 H 1.09002 * 109.47722 * 180.02562 * 24 22 21 47 47 H 1.09004 * 109.46862 * 300.00040 * 24 22 21 48 48 H 1.09002 * 109.47045 * 179.97438 * 25 22 21 49 49 H 1.09000 * 109.47140 * 299.99606 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6151 1.3126 6 1 4.0789 -0.0857 0.5395 7 6 4.2304 -1.1929 2.3582 8 7 3.5764 -1.8371 3.2999 9 14 6.0920 -1.0606 2.4371 10 1 6.4846 0.3703 2.4963 11 1 6.5871 -1.7608 3.6495 12 1 6.6844 -1.6869 1.2279 13 7 2.0196 -0.6926 -1.1995 14 6 1.4342 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 1 0.6791 0.2550 -2.5104 17 6 2.4592 1.4500 -2.3009 18 6 2.1819 2.2723 -3.5610 19 1 1.1082 2.4302 -3.6628 20 6 2.8888 3.6250 -3.4531 21 6 2.7053 1.5202 -4.7863 22 6 1.9989 0.1673 -4.8944 23 6 0.4917 0.3890 -5.0373 24 6 2.5226 -0.5851 -6.1193 25 6 2.2762 -0.6549 -3.6344 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7716 1.2056 31 1 4.0608 -2.2439 4.0353 32 1 1.8662 -2.5522 -2.1649 33 1 1.6465 -2.5988 -0.3991 34 1 0.3555 -1.9520 -1.4398 35 1 3.5330 1.2922 -2.1995 36 1 2.0867 1.9857 -1.4277 37 1 2.6908 4.2109 -4.3507 38 1 2.5163 4.1610 -2.5802 39 1 3.9625 3.4667 -3.3515 40 1 2.5073 2.1058 -5.6840 41 1 3.7790 1.3624 -4.6844 42 1 0.2942 0.9748 -5.9350 43 1 -0.0116 -0.5749 -5.1139 44 1 0.1189 0.9248 -4.1644 45 1 3.5963 -0.7429 -6.0171 46 1 2.0191 -1.5487 -6.1966 47 1 2.3253 0.0006 -7.0172 48 1 1.7726 -1.6186 -3.7112 49 1 3.3499 -0.8128 -3.5325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708574968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:04 Heat of formation + Delta-G solvation = -28.269282 kcal Electronic energy + Delta-G solvation = -22566.685258 eV Core-core repulsion = 19720.421919 eV Total energy + Delta-G solvation = -2846.263339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01248 -37.17685 -33.95669 -32.96754 -31.33011 -29.11152 -27.37812 -27.26034 -26.58257 -26.35394 -24.64830 -23.10108 -20.80697 -20.28917 -18.43482 -18.29199 -16.16317 -15.77541 -15.05858 -14.82252 -14.35754 -14.32898 -14.04227 -13.80067 -13.23930 -13.05785 -12.62669 -12.48761 -12.35679 -12.14674 -12.04903 -11.83126 -11.75371 -11.59823 -11.48898 -11.25058 -11.06548 -10.84784 -10.79461 -10.64240 -10.60590 -10.52728 -10.40093 -10.03629 -10.02547 -9.82066 -9.43185 -9.08419 -8.91191 -8.20236 -7.32314 -5.83842 -3.81037 3.43674 3.47178 3.51012 4.47145 4.60460 4.69751 4.77718 4.98651 5.12982 5.29794 5.34554 5.50410 5.53351 5.54509 5.60484 5.64345 5.69242 5.74802 5.80479 5.83750 5.90900 5.93740 5.94917 5.98468 6.01238 6.06767 6.08166 6.09632 6.14522 6.21487 6.25201 6.36525 6.41927 6.49287 6.49842 6.54935 6.64321 6.69619 6.82031 6.82128 7.10605 7.61991 7.78401 8.01945 8.12891 8.19189 8.64770 9.24694 9.80168 11.28253 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.005526 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.471153 B = 5065.776589 C = 5348.931460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.083 3.917 3 H 0.073 0.927 4 C 0.030 3.970 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.510 5.510 14 C 0.025 3.975 15 C 0.084 3.916 16 H 0.034 0.966 17 C -0.107 4.107 18 C -0.092 4.092 19 H 0.067 0.933 20 C -0.145 4.145 21 C -0.100 4.100 22 C -0.064 4.064 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.101 4.101 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.257 0.743 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.060 0.940 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 5.728 -17.083 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.007 4.007 5 C -0.525 4.525 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.233 5.233 14 C -0.124 4.124 15 C -0.025 4.025 16 H 0.052 0.948 17 C -0.144 4.144 18 C -0.111 4.111 19 H 0.085 0.915 20 C -0.203 4.203 21 C -0.138 4.138 22 C -0.065 4.065 23 C -0.200 4.200 24 C -0.196 4.196 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.752 5.571 -16.866 18.387 hybrid contribution 0.127 0.031 0.099 0.164 sum -4.625 5.602 -16.767 18.273 Atomic orbital electron populations 1.22508 1.00114 1.01233 1.00416 1.21975 0.89812 0.98732 0.91985 0.90905 1.19189 0.96285 0.95353 0.89840 1.21133 0.91831 1.32775 1.06770 0.92235 1.24998 0.97868 0.95991 0.96051 1.69956 1.35215 1.37079 1.12390 0.86716 0.86584 0.77950 0.77029 1.20550 1.21713 1.20431 1.62136 1.58314 1.01841 1.00987 1.22399 0.95525 0.91858 1.02579 1.21618 0.96827 0.93448 0.90590 0.94830 1.21668 1.01838 0.94512 0.96417 1.21172 0.99868 0.94741 0.95320 0.91493 1.21811 1.00789 0.96582 1.01096 1.21633 0.99934 0.94892 0.97292 1.20530 0.95307 0.95408 0.95212 1.21966 0.95351 1.01277 1.01436 1.21843 1.01002 0.99813 0.96982 1.21685 1.02011 0.97739 0.92451 0.92763 0.94304 0.92891 0.96588 0.96339 0.93353 0.92577 0.90367 0.96865 0.91038 0.91740 0.93240 0.92761 0.92659 0.92608 0.91918 0.93225 0.93095 0.92069 0.92677 0.92878 0.93077 0.92159 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.44 37.16 0.31 -2.93 16 2 C 0.08 1.70 2.07 -67.71 -0.14 1.56 16 3 H 0.07 1.52 5.83 -51.93 -0.30 1.22 16 4 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 5 C -0.49 -13.72 8.84 -34.44 -0.30 -14.03 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.54 13.29 55.43 0.74 -26.80 16 9 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.51 -9.68 4.29 -226.91 -0.97 -10.66 16 14 C 0.02 0.44 8.23 60.06 0.49 0.93 16 15 C 0.08 1.29 1.46 -67.71 -0.10 1.19 16 16 H 0.03 0.52 4.91 -51.93 -0.25 0.27 16 17 C -0.11 -1.59 4.28 -26.73 -0.11 -1.71 16 18 C -0.09 -1.10 2.45 -90.62 -0.22 -1.32 16 19 H 0.07 0.79 6.43 -51.93 -0.33 0.45 16 20 C -0.15 -1.59 9.19 37.16 0.34 -1.25 16 21 C -0.10 -1.11 4.01 -26.73 -0.11 -1.22 16 22 C -0.06 -0.72 0.77 -154.51 -0.12 -0.84 16 23 C -0.14 -1.52 7.78 37.16 0.29 -1.23 16 24 C -0.14 -1.39 8.47 37.15 0.31 -1.07 16 25 C -0.10 -1.39 3.65 -26.73 -0.10 -1.49 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.61 6.69 -51.93 -0.35 0.27 16 28 H 0.05 0.93 6.42 -51.93 -0.33 0.60 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.50 6.26 -51.93 -0.33 0.18 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.06 0.91 6.23 -51.93 -0.32 0.59 16 33 H 0.08 1.61 6.21 -51.93 -0.32 1.29 16 34 H 0.01 0.22 6.46 -51.93 -0.34 -0.12 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.03 6.20 -51.93 -0.32 0.71 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -29.30 350.73 -8.88 -38.18 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -9.24 Total: -1.91 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 0.33 Total: -21.39 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.24 Total: -37.46 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.30 -8.88 -38.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.912 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds