Wall clock time and date at job start Mon Mar 30 2020 08:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47576 * 2 1 4 4 C 1.53005 * 109.47250 * 120.00189 * 2 1 3 5 5 C 1.50703 * 109.47203 * 184.99270 * 4 2 1 6 6 H 1.07996 * 119.99881 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99923 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47282 * 60.00007 * 9 7 5 11 11 H 1.48503 * 109.47084 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46841 * 299.99776 * 9 7 5 13 13 N 1.46905 * 109.46846 * 239.99716 * 2 1 3 14 14 C 1.46898 * 111.00303 * 306.04822 * 13 2 1 15 15 C 1.46902 * 110.99603 * 70.00516 * 13 2 1 16 16 H 1.09004 * 109.46739 * 299.99369 * 15 13 2 17 17 C 1.52996 * 109.47341 * 59.99569 * 15 13 2 18 18 C 1.52997 * 109.46975 * 179.97438 * 17 15 13 19 19 H 1.09000 * 109.47140 * 60.00388 * 18 17 15 20 20 C 1.53006 * 109.47164 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47592 * 300.00042 * 18 17 15 22 22 C 1.53006 * 109.47000 * 59.99968 * 21 18 17 23 23 C 1.53002 * 109.46886 * 59.99999 * 22 21 18 24 24 C 1.52993 * 109.47478 * 180.02562 * 22 21 18 25 25 C 1.52997 * 109.46974 * 300.00410 * 22 21 18 26 26 H 1.09001 * 109.46874 * 300.00145 * 1 2 3 27 27 H 1.08993 * 109.47251 * 59.99571 * 1 2 3 28 28 H 1.09006 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46931 * 305.00172 * 4 2 1 30 30 H 1.09001 * 109.47082 * 65.00045 * 4 2 1 31 31 H 0.97000 * 120.00240 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47408 * 183.95021 * 14 13 2 33 33 H 1.08999 * 109.46863 * 303.95396 * 14 13 2 34 34 H 1.08997 * 109.46825 * 63.95051 * 14 13 2 35 35 H 1.09000 * 109.46870 * 60.00190 * 17 15 13 36 36 H 1.09001 * 109.47372 * 300.00340 * 17 15 13 37 37 H 1.09001 * 109.46801 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46998 * 299.99705 * 20 18 17 39 39 H 1.09000 * 109.47050 * 59.99996 * 20 18 17 40 40 H 1.08993 * 109.47839 * 179.97438 * 21 18 17 41 41 H 1.09000 * 109.47160 * 300.00333 * 21 18 17 42 42 H 1.08996 * 109.46698 * 60.00234 * 23 22 21 43 43 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47142 * 300.00180 * 23 22 21 45 45 H 1.09004 * 109.46998 * 59.99563 * 24 22 21 46 46 H 1.09002 * 109.47722 * 180.02562 * 24 22 21 47 47 H 1.09004 * 109.46862 * 300.00040 * 24 22 21 48 48 H 1.09002 * 109.47045 * 179.97438 * 25 22 21 49 49 H 1.09000 * 109.47140 * 299.99606 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6151 1.3126 6 1 4.0789 -0.0857 0.5395 7 6 4.2304 -1.1929 2.3582 8 7 3.5764 -1.8371 3.2999 9 14 6.0920 -1.0606 2.4371 10 1 6.4846 0.3703 2.4963 11 1 6.5871 -1.7608 3.6495 12 1 6.6844 -1.6869 1.2279 13 7 2.0196 -0.6926 -1.1995 14 6 1.4342 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 1 0.6791 0.2550 -2.5104 17 6 2.4592 1.4500 -2.3009 18 6 2.1819 2.2723 -3.5610 19 1 1.1082 2.4302 -3.6628 20 6 2.8888 3.6250 -3.4531 21 6 2.7053 1.5202 -4.7863 22 6 1.9989 0.1673 -4.8944 23 6 0.4917 0.3890 -5.0373 24 6 2.5226 -0.5851 -6.1193 25 6 2.2762 -0.6549 -3.6344 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7716 1.2056 31 1 4.0608 -2.2439 4.0353 32 1 1.8662 -2.5522 -2.1649 33 1 1.6465 -2.5988 -0.3991 34 1 0.3555 -1.9520 -1.4398 35 1 3.5330 1.2922 -2.1995 36 1 2.0867 1.9857 -1.4277 37 1 2.6908 4.2109 -4.3507 38 1 2.5163 4.1610 -2.5802 39 1 3.9625 3.4667 -3.3515 40 1 2.5073 2.1058 -5.6840 41 1 3.7790 1.3624 -4.6844 42 1 0.2942 0.9748 -5.9350 43 1 -0.0116 -0.5749 -5.1139 44 1 0.1189 0.9248 -4.1644 45 1 3.5963 -0.7429 -6.0171 46 1 2.0191 -1.5487 -6.1966 47 1 2.3253 0.0006 -7.0172 48 1 1.7726 -1.6186 -3.7112 49 1 3.3499 -0.8128 -3.5325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708574968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:04 Heat of formation + Delta-G solvation = -43.727763 kcal Electronic energy + Delta-G solvation = -22567.355588 eV Core-core repulsion = 19720.421919 eV Total energy + Delta-G solvation = -2846.933669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15589 -38.57439 -35.01625 -34.89444 -32.96406 -30.47937 -29.24079 -28.14743 -27.58076 -27.39545 -25.99053 -25.10136 -22.23669 -21.28478 -19.91974 -19.35833 -18.34934 -17.16508 -16.59433 -16.05276 -15.88965 -15.50046 -15.22878 -15.00038 -14.53268 -14.34462 -14.00000 -13.88923 -13.53220 -13.47159 -13.35208 -13.15179 -13.00076 -12.87510 -12.62770 -12.57840 -12.52901 -12.40921 -12.36217 -12.11570 -11.95209 -11.82313 -11.57130 -11.54305 -11.14166 -11.09424 -10.94674 -10.83099 -10.64845 -10.43951 -8.80090 -8.08703 -6.12992 1.40616 1.43461 1.50852 2.47597 3.12068 3.28095 3.75399 3.77394 3.99280 4.13479 4.23680 4.27931 4.37555 4.42822 4.43209 4.51246 4.55665 4.58792 4.65993 4.71340 4.79178 4.80954 4.86302 4.92330 4.97472 4.99770 5.05761 5.07583 5.14196 5.17044 5.20292 5.21237 5.24527 5.26307 5.32316 5.39363 5.40891 5.48954 5.51751 5.54642 5.59399 5.74667 5.75331 5.91947 6.36522 6.53961 6.62491 7.00492 7.52356 9.03232 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.005526 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.471153 B = 5065.776589 C = 5348.931460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 H 0.067 0.933 4 C 0.037 3.963 5 C -0.496 4.496 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.533 5.533 14 C 0.031 3.969 15 C 0.088 3.912 16 H 0.043 0.957 17 C -0.104 4.104 18 C -0.086 4.086 19 H 0.076 0.924 20 C -0.144 4.144 21 C -0.097 4.097 22 C -0.060 4.060 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.096 4.096 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.051 0.949 29 H -0.012 1.012 30 H -0.004 1.004 31 H 0.258 0.742 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.481 6.734 -19.633 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 H 0.085 0.915 4 C -0.001 4.001 5 C -0.534 4.534 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.256 5.256 14 C -0.117 4.117 15 C -0.020 4.020 16 H 0.061 0.939 17 C -0.142 4.142 18 C -0.104 4.104 19 H 0.094 0.906 20 C -0.201 4.201 21 C -0.135 4.135 22 C -0.061 4.061 23 C -0.198 4.198 24 C -0.194 4.194 25 C -0.134 4.134 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.006 0.994 30 H 0.014 0.986 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.930 6.585 -19.432 21.102 hybrid contribution 0.174 -0.293 0.900 0.962 sum -4.756 6.293 -18.532 20.141 Atomic orbital electron populations 1.22369 0.97679 1.01540 1.01655 1.21639 0.91693 0.97560 0.90673 0.91490 1.19049 0.95185 0.94336 0.91487 1.21428 0.93251 1.32243 1.06474 0.92631 1.25830 1.02716 0.95737 0.95772 1.70087 1.37062 1.38088 1.13050 0.85668 0.80828 0.78354 0.77141 1.19525 1.21229 1.19891 1.62033 1.59170 1.02572 1.01816 1.22299 0.96669 0.91228 1.01485 1.21678 0.97414 0.93345 0.89548 0.93948 1.21635 1.00086 0.94720 0.97729 1.21130 1.00589 0.94741 0.93976 0.90566 1.21798 1.00182 0.96193 1.01954 1.21623 0.99314 0.94956 0.97577 1.20509 0.96181 0.95116 0.94267 1.21940 0.94334 1.01607 1.01907 1.21815 1.00657 1.00046 0.96858 1.21648 1.00613 0.98147 0.93019 0.92702 0.91832 0.93006 0.99353 0.98590 0.93330 0.90926 0.93779 0.95186 0.93410 0.93213 0.91201 0.93152 0.93352 0.90505 0.92821 0.91511 0.92935 0.92821 0.93157 0.92639 0.91440 0.92066 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.03 8.44 71.98 0.61 -5.42 16 2 C 0.09 3.86 2.07 44.91 0.09 3.96 16 3 H 0.07 2.86 5.83 -2.39 -0.01 2.85 16 4 C 0.04 1.95 4.37 29.85 0.13 2.08 16 5 C -0.50 -28.75 8.84 25.60 0.23 -28.52 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 9 Si 0.95 46.40 29.54 68.60 2.03 48.43 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.53 -20.35 4.29 -871.80 -3.74 -24.09 16 14 C 0.03 1.12 8.23 127.69 1.05 2.17 16 15 C 0.09 2.63 1.46 44.91 0.07 2.70 16 16 H 0.04 1.22 4.91 -2.39 -0.01 1.21 16 17 C -0.10 -3.06 4.28 30.59 0.13 -2.92 16 18 C -0.09 -1.87 2.45 -10.79 -0.03 -1.89 16 19 H 0.08 1.56 6.43 -2.39 -0.02 1.55 16 20 C -0.14 -2.87 9.19 71.98 0.66 -2.21 16 21 C -0.10 -1.91 4.01 30.60 0.12 -1.78 16 22 C -0.06 -1.20 0.77 -52.18 -0.04 -1.24 16 23 C -0.14 -2.51 7.78 71.98 0.56 -1.95 16 24 C -0.14 -2.34 8.47 71.98 0.61 -1.73 16 25 C -0.10 -2.52 3.65 30.59 0.11 -2.41 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.89 6.69 -2.39 -0.02 1.87 16 28 H 0.05 1.80 6.42 -2.38 -0.02 1.78 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.00 -0.24 6.26 -2.39 -0.01 -0.25 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.07 2.33 6.23 -2.39 -0.01 2.31 16 33 H 0.04 1.87 6.21 -2.39 -0.01 1.86 16 34 H 0.03 0.96 6.46 -2.39 -0.02 0.95 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.59 6.20 -2.39 -0.01 1.57 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 1.04 4.81 -2.39 -0.01 1.03 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.06 1.58 6.34 -2.39 -0.02 1.56 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.15 350.73 4.22 -59.93 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.88 Total: 13.15 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 4.77 Total: -38.98 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -3.46 Total: -82.53 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -64.15 4.22 -59.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708574968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.202 kcal (2) G-P(sol) polarization free energy of solvation -64.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds