Wall clock time and date at job start Mon Mar 30 2020 07:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 H 1.09004 * 109.47033 * 54.36738 * 3 2 1 5 5 C 1.50704 * 109.47287 * 294.37406 * 3 2 1 6 6 H 1.07993 * 119.99644 * 273.39144 * 5 3 2 7 7 C 1.37881 * 119.99953 * 93.10529 * 5 3 2 8 8 N 1.31511 * 120.00182 * 4.04397 * 7 5 3 9 9 Si 1.86796 * 119.99885 * 184.03346 * 7 5 3 10 10 H 1.48506 * 109.46844 * 60.00370 * 9 7 5 11 11 H 1.48497 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47432 * 300.00668 * 9 7 5 13 13 N 1.46894 * 109.47735 * 174.36983 * 3 2 1 14 14 C 1.46905 * 110.99964 * 54.59683 * 13 3 2 15 15 C 1.46898 * 111.00020 * 290.64451 * 13 3 2 16 16 H 1.09005 * 109.47276 * 61.86131 * 15 13 3 17 17 C 1.53004 * 109.47292 * 301.86085 * 15 13 3 18 18 C 1.53001 * 109.47100 * 180.02562 * 17 15 13 19 19 H 1.09004 * 109.46857 * 299.99658 * 18 17 15 20 20 C 1.53005 * 109.46754 * 180.02562 * 18 17 15 21 21 C 1.52994 * 109.47383 * 60.00061 * 18 17 15 22 22 C 1.53004 * 109.46953 * 300.00029 * 21 18 17 23 23 C 1.53001 * 109.46879 * 180.02562 * 22 21 18 24 24 C 1.53003 * 109.47241 * 299.99731 * 22 21 18 25 25 C 1.52992 * 109.47240 * 59.99948 * 22 21 18 26 26 H 1.09002 * 109.47340 * 183.90604 * 1 2 3 27 27 H 1.08999 * 109.47464 * 303.90949 * 1 2 3 28 28 H 1.09004 * 109.47679 * 63.91070 * 1 2 3 29 29 H 1.08997 * 109.47175 * 240.00360 * 2 1 3 30 30 H 1.08999 * 109.47321 * 120.00440 * 2 1 3 31 31 H 0.96997 * 120.00494 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46670 * 60.00009 * 14 13 3 33 33 H 1.08994 * 109.47233 * 180.02562 * 14 13 3 34 34 H 1.08998 * 109.46986 * 300.00602 * 14 13 3 35 35 H 1.08997 * 109.46737 * 300.00295 * 17 15 13 36 36 H 1.09001 * 109.46884 * 59.99856 * 17 15 13 37 37 H 1.09001 * 109.47179 * 59.99800 * 20 18 17 38 38 H 1.09005 * 109.46743 * 179.97438 * 20 18 17 39 39 H 1.08995 * 109.46775 * 299.99477 * 20 18 17 40 40 H 1.08997 * 109.47064 * 59.99417 * 21 18 17 41 41 H 1.08996 * 109.47097 * 179.97438 * 21 18 17 42 42 H 1.08996 * 109.47331 * 59.99820 * 23 22 21 43 43 H 1.09003 * 109.47100 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.46903 * 299.99245 * 23 22 21 45 45 H 1.09006 * 109.46653 * 59.99648 * 24 22 21 46 46 H 1.08997 * 109.47512 * 180.02562 * 24 22 21 47 47 H 1.09002 * 109.47406 * 300.00773 * 24 22 21 48 48 H 1.09003 * 109.47145 * 179.97438 * 25 22 21 49 49 H 1.08997 * 109.47549 * 60.00138 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 0.8353 5 6 1.6546 2.1116 -1.2942 6 1 2.2938 2.0212 -2.1600 7 6 0.4832 2.8343 -1.3745 8 7 -0.2581 3.0066 -0.3019 9 14 -0.0510 3.5689 -3.0068 10 1 -0.2305 2.4826 -4.0033 11 1 -1.3346 4.2936 -2.8271 12 1 0.9880 4.5149 -3.4876 13 7 3.5026 1.4448 0.1359 14 6 4.1291 0.6149 -0.9019 15 6 3.9074 1.0043 1.4775 16 1 3.5702 -0.0193 1.6411 17 6 3.2781 1.9225 2.5273 18 6 3.7002 1.4641 3.9246 19 1 3.3633 0.4404 4.0884 20 6 3.0703 2.3819 4.9743 21 6 5.2244 1.5243 4.0424 22 6 5.8537 0.6062 2.9927 23 6 7.3780 0.6660 3.1109 24 6 5.3809 -0.8307 3.2226 25 6 5.4317 1.0646 1.5954 26 1 -0.3634 -1.0253 0.0700 27 1 -0.3634 0.5733 0.8528 28 1 -0.3634 0.4519 -0.9230 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 -1.0820 3.5153 -0.3583 32 1 3.8688 1.0056 -1.8857 33 1 5.2117 0.6339 -0.7779 34 1 3.7712 -0.4107 -0.8121 35 1 3.6153 2.9460 2.3637 36 1 2.1922 1.8799 2.4431 37 1 1.9844 2.3385 4.8903 38 1 3.3707 2.0550 5.9699 39 1 3.4069 3.4056 4.8107 40 1 5.5613 2.5479 3.8785 41 1 5.5251 1.1982 5.0380 42 1 7.6783 0.3392 4.1064 43 1 7.8264 0.0122 2.3627 44 1 7.7152 1.6895 2.9473 45 1 4.2949 -0.8736 3.1387 46 1 5.8295 -1.4849 2.4750 47 1 5.6815 -1.1573 4.2181 48 1 5.8804 0.4107 0.8475 49 1 5.7685 2.0881 1.4315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708746864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:28 Heat of formation + Delta-G solvation = -26.896359 kcal Electronic energy + Delta-G solvation = -22851.453939 eV Core-core repulsion = 20005.250135 eV Total energy + Delta-G solvation = -2846.203804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76565 -36.80560 -33.76645 -33.05843 -31.04045 -29.51672 -27.22650 -27.00480 -26.41882 -25.65618 -24.39554 -22.64653 -20.86796 -20.09252 -18.58765 -18.04599 -16.37286 -15.24560 -14.79904 -14.70842 -14.30096 -13.96806 -13.78308 -13.48433 -13.20810 -12.95898 -12.58513 -12.38466 -12.25813 -12.07665 -11.96938 -11.63968 -11.60291 -11.31367 -11.20475 -10.87562 -10.81142 -10.74013 -10.60830 -10.56101 -10.41011 -10.30162 -10.23963 -9.90232 -9.86953 -9.66525 -9.50943 -9.02671 -8.76729 -8.31082 -6.93423 -5.95314 -3.95245 3.35443 3.40041 3.43190 4.46352 4.78217 4.85689 4.95895 5.16633 5.30000 5.44140 5.50097 5.58712 5.69734 5.73301 5.77023 5.84631 5.87171 5.93042 5.97424 6.07236 6.09223 6.13814 6.20371 6.23625 6.26868 6.31444 6.39647 6.40076 6.43748 6.45023 6.56500 6.61304 6.65986 6.68860 6.75728 6.80419 6.93784 6.99415 7.06332 7.27478 7.37447 7.65250 7.69357 7.92370 8.20820 8.51853 8.74279 9.11318 9.66422 11.13118 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.005801 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.723529 B = 4825.856107 C = 5147.202206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.139 4.139 3 C 0.198 3.802 4 H 0.078 0.922 5 C -0.493 4.493 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.529 5.529 14 C 0.030 3.970 15 C 0.084 3.916 16 H 0.032 0.968 17 C -0.105 4.105 18 C -0.093 4.093 19 H 0.066 0.934 20 C -0.144 4.144 21 C -0.099 4.099 22 C -0.064 4.064 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.100 4.100 26 H 0.010 0.990 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.012 0.988 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 -4.947 8.403 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.092 3.908 4 H 0.095 0.905 5 C -0.532 4.532 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.529 5.529 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.118 4.118 15 C -0.025 4.025 16 H 0.049 0.951 17 C -0.142 4.142 18 C -0.111 4.111 19 H 0.084 0.916 20 C -0.202 4.202 21 C -0.136 4.136 22 C -0.065 4.065 23 C -0.196 4.196 24 C -0.200 4.200 25 C -0.138 4.138 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.736 -4.354 8.391 13.571 hybrid contribution -0.667 -0.473 -0.872 1.195 sum 9.069 -4.827 7.520 12.732 Atomic orbital electron populations 1.21414 0.95888 0.96795 1.03398 1.22205 0.96833 1.01427 0.97371 1.19690 0.80949 0.90674 0.99477 0.90460 1.20958 1.04997 1.31189 0.96025 0.92786 1.24860 0.96907 0.95627 0.96046 1.69915 1.14432 1.41057 1.27466 0.86743 0.77794 0.79322 0.84597 1.20480 1.21442 1.20359 1.62563 1.11917 1.50832 0.99868 1.22275 0.97314 0.94822 0.97417 1.21559 0.93575 0.96326 0.90998 0.95062 1.21648 1.01196 0.99635 0.91756 1.21180 0.94788 0.99445 0.95732 0.91558 1.21800 1.00856 0.99665 0.97853 1.21620 0.95151 0.99311 0.97533 1.20533 0.94589 0.95352 0.96014 1.21843 0.95228 1.01506 1.00988 1.21965 1.01896 0.95603 1.00572 1.21683 0.96165 1.01390 0.94533 0.97058 0.92917 0.91879 0.94240 0.96193 0.93065 0.91412 0.93697 0.96950 0.91642 0.91000 0.92615 0.93445 0.92832 0.92107 0.92792 0.93152 0.92990 0.92815 0.91883 0.93201 0.93347 0.92458 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.75 37.15 0.33 -2.35 16 2 C -0.14 -3.13 4.55 -26.74 -0.12 -3.25 16 3 C 0.20 4.79 1.71 -68.87 -0.12 4.67 16 4 H 0.08 2.07 4.95 -51.93 -0.26 1.81 16 5 C -0.49 -13.19 7.67 -34.44 -0.26 -13.46 16 6 H 0.05 1.46 6.32 -52.49 -0.33 1.13 16 7 C 0.07 1.82 4.31 -17.82 -0.08 1.74 16 8 N -0.89 -24.67 11.70 55.43 0.65 -24.03 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -11.30 4.58 -228.29 -1.04 -12.35 16 14 C 0.03 0.59 8.51 60.07 0.51 1.10 16 15 C 0.08 1.51 1.42 -67.71 -0.10 1.42 16 16 H 0.03 0.59 4.85 -51.93 -0.25 0.34 16 17 C -0.10 -1.86 4.22 -26.73 -0.11 -1.97 16 18 C -0.09 -1.31 2.44 -90.62 -0.22 -1.53 16 19 H 0.07 0.95 6.43 -51.93 -0.33 0.61 16 20 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 21 C -0.10 -1.25 4.01 -26.73 -0.11 -1.36 16 22 C -0.06 -0.82 0.77 -154.51 -0.12 -0.93 16 23 C -0.14 -1.51 8.47 37.16 0.31 -1.20 16 24 C -0.14 -1.77 7.78 37.16 0.29 -1.48 16 25 C -0.10 -1.53 3.72 -26.73 -0.10 -1.63 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 1.26 8.01 -51.93 -0.42 0.84 16 28 H 0.06 1.57 6.60 -51.93 -0.34 1.23 16 29 H 0.04 0.89 6.67 -51.93 -0.35 0.54 16 30 H 0.02 0.42 6.48 -51.93 -0.34 0.08 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.07 1.41 6.44 -51.93 -0.33 1.08 16 33 H 0.04 0.77 6.05 -51.93 -0.31 0.46 16 34 H 0.01 0.24 6.35 -51.93 -0.33 -0.09 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.47 6.18 -51.93 -0.32 1.15 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.87 6.28 -51.93 -0.33 0.54 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -26.69 345.23 -8.89 -35.58 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -9.12 Total: 1.14 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 0.45 Total: -21.77 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.40 Total: -36.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.69 -8.89 -35.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.689 kcal (2) G-P(sol) polarization free energy of solvation -26.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds