Wall clock time and date at job start Mon Mar 30 2020 07:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 H 1.09004 * 109.47033 * 54.36738 * 3 2 1 5 5 C 1.50704 * 109.47287 * 294.37406 * 3 2 1 6 6 H 1.07993 * 119.99644 * 273.39144 * 5 3 2 7 7 C 1.37881 * 119.99953 * 93.10529 * 5 3 2 8 8 N 1.31511 * 120.00182 * 4.04397 * 7 5 3 9 9 Si 1.86796 * 119.99885 * 184.03346 * 7 5 3 10 10 H 1.48506 * 109.46844 * 60.00370 * 9 7 5 11 11 H 1.48497 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47432 * 300.00668 * 9 7 5 13 13 N 1.46894 * 109.47735 * 174.36983 * 3 2 1 14 14 C 1.46905 * 110.99964 * 54.59683 * 13 3 2 15 15 C 1.46898 * 111.00020 * 290.64451 * 13 3 2 16 16 H 1.09005 * 109.47276 * 61.86131 * 15 13 3 17 17 C 1.53004 * 109.47292 * 301.86085 * 15 13 3 18 18 C 1.53001 * 109.47100 * 180.02562 * 17 15 13 19 19 H 1.09004 * 109.46857 * 299.99658 * 18 17 15 20 20 C 1.53005 * 109.46754 * 180.02562 * 18 17 15 21 21 C 1.52994 * 109.47383 * 60.00061 * 18 17 15 22 22 C 1.53004 * 109.46953 * 300.00029 * 21 18 17 23 23 C 1.53001 * 109.46879 * 180.02562 * 22 21 18 24 24 C 1.53003 * 109.47241 * 299.99731 * 22 21 18 25 25 C 1.52992 * 109.47240 * 59.99948 * 22 21 18 26 26 H 1.09002 * 109.47340 * 183.90604 * 1 2 3 27 27 H 1.08999 * 109.47464 * 303.90949 * 1 2 3 28 28 H 1.09004 * 109.47679 * 63.91070 * 1 2 3 29 29 H 1.08997 * 109.47175 * 240.00360 * 2 1 3 30 30 H 1.08999 * 109.47321 * 120.00440 * 2 1 3 31 31 H 0.96997 * 120.00494 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46670 * 60.00009 * 14 13 3 33 33 H 1.08994 * 109.47233 * 180.02562 * 14 13 3 34 34 H 1.08998 * 109.46986 * 300.00602 * 14 13 3 35 35 H 1.08997 * 109.46737 * 300.00295 * 17 15 13 36 36 H 1.09001 * 109.46884 * 59.99856 * 17 15 13 37 37 H 1.09001 * 109.47179 * 59.99800 * 20 18 17 38 38 H 1.09005 * 109.46743 * 179.97438 * 20 18 17 39 39 H 1.08995 * 109.46775 * 299.99477 * 20 18 17 40 40 H 1.08997 * 109.47064 * 59.99417 * 21 18 17 41 41 H 1.08996 * 109.47097 * 179.97438 * 21 18 17 42 42 H 1.08996 * 109.47331 * 59.99820 * 23 22 21 43 43 H 1.09003 * 109.47100 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.46903 * 299.99245 * 23 22 21 45 45 H 1.09006 * 109.46653 * 59.99648 * 24 22 21 46 46 H 1.08997 * 109.47512 * 180.02562 * 24 22 21 47 47 H 1.09002 * 109.47406 * 300.00773 * 24 22 21 48 48 H 1.09003 * 109.47145 * 179.97438 * 25 22 21 49 49 H 1.08997 * 109.47549 * 60.00138 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 0.8353 5 6 1.6546 2.1116 -1.2942 6 1 2.2938 2.0212 -2.1600 7 6 0.4832 2.8343 -1.3745 8 7 -0.2581 3.0066 -0.3019 9 14 -0.0510 3.5689 -3.0068 10 1 -0.2305 2.4826 -4.0033 11 1 -1.3346 4.2936 -2.8271 12 1 0.9880 4.5149 -3.4876 13 7 3.5026 1.4448 0.1359 14 6 4.1291 0.6149 -0.9019 15 6 3.9074 1.0043 1.4775 16 1 3.5702 -0.0193 1.6411 17 6 3.2781 1.9225 2.5273 18 6 3.7002 1.4641 3.9246 19 1 3.3633 0.4404 4.0884 20 6 3.0703 2.3819 4.9743 21 6 5.2244 1.5243 4.0424 22 6 5.8537 0.6062 2.9927 23 6 7.3780 0.6660 3.1109 24 6 5.3809 -0.8307 3.2226 25 6 5.4317 1.0646 1.5954 26 1 -0.3634 -1.0253 0.0700 27 1 -0.3634 0.5733 0.8528 28 1 -0.3634 0.4519 -0.9230 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 -1.0820 3.5153 -0.3583 32 1 3.8688 1.0056 -1.8857 33 1 5.2117 0.6339 -0.7779 34 1 3.7712 -0.4107 -0.8121 35 1 3.6153 2.9460 2.3637 36 1 2.1922 1.8799 2.4431 37 1 1.9844 2.3385 4.8903 38 1 3.3707 2.0550 5.9699 39 1 3.4069 3.4056 4.8107 40 1 5.5613 2.5479 3.8785 41 1 5.5251 1.1982 5.0380 42 1 7.6783 0.3392 4.1064 43 1 7.8264 0.0122 2.3627 44 1 7.7152 1.6895 2.9473 45 1 4.2949 -0.8736 3.1387 46 1 5.8295 -1.4849 2.4750 47 1 5.6815 -1.1573 4.2181 48 1 5.8804 0.4107 0.8475 49 1 5.7685 2.0881 1.4315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708746864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:27 Heat of formation + Delta-G solvation = -40.179197 kcal Electronic energy + Delta-G solvation = -22852.029926 eV Core-core repulsion = 20005.250135 eV Total energy + Delta-G solvation = -2846.779791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06310 -38.39921 -34.91698 -34.88062 -32.94569 -31.00079 -28.71514 -28.13936 -27.45399 -27.26017 -25.96617 -24.46288 -22.50605 -21.27487 -20.18741 -19.29166 -18.35830 -16.79156 -16.41233 -15.99169 -15.78192 -15.47432 -15.25357 -14.97298 -14.53745 -14.35544 -14.21437 -13.84657 -13.45942 -13.40790 -13.23663 -12.96042 -12.89800 -12.75806 -12.62826 -12.58123 -12.39733 -12.29634 -12.18883 -12.10200 -11.87822 -11.72343 -11.62071 -11.53069 -11.35866 -11.05184 -10.84168 -10.78696 -10.53559 -10.35714 -8.63826 -8.02957 -6.08660 1.42720 1.43564 1.50269 2.46813 3.17817 3.49992 3.77455 3.82564 4.07259 4.16480 4.31650 4.41110 4.43033 4.49302 4.53293 4.59276 4.64015 4.69409 4.75510 4.80409 4.81521 4.85974 4.89809 4.94582 4.99330 5.05680 5.08401 5.10803 5.18097 5.18919 5.21383 5.26405 5.31854 5.33147 5.35322 5.43315 5.49677 5.50772 5.56011 5.63125 5.72237 5.75789 5.80643 5.84187 6.27212 6.74604 6.93145 7.03565 7.55872 9.04008 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.005801 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.723529 B = 4825.856107 C = 5147.202206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.130 4.130 3 C 0.205 3.795 4 H 0.047 0.953 5 C -0.507 4.507 6 H 0.046 0.954 7 C 0.026 3.974 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.548 5.548 14 C 0.036 3.964 15 C 0.088 3.912 16 H 0.028 0.972 17 C -0.098 4.098 18 C -0.087 4.087 19 H 0.068 0.932 20 C -0.142 4.142 21 C -0.094 4.094 22 C -0.061 4.061 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.093 4.093 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.258 0.742 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.015 0.985 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.525 -6.025 9.311 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.170 4.170 3 C 0.098 3.902 4 H 0.065 0.935 5 C -0.546 4.546 6 H 0.064 0.936 7 C -0.173 4.173 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.271 5.271 14 C -0.112 4.112 15 C -0.021 4.021 16 H 0.045 0.955 17 C -0.136 4.136 18 C -0.106 4.106 19 H 0.087 0.913 20 C -0.200 4.200 21 C -0.132 4.132 22 C -0.062 4.062 23 C -0.191 4.191 24 C -0.198 4.198 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.531 -5.439 9.297 15.779 hybrid contribution -1.209 -0.137 -1.145 1.671 sum 10.321 -5.576 8.152 14.286 Atomic orbital electron populations 1.21282 0.96049 0.97950 1.01197 1.22062 0.96570 1.00512 0.97812 1.19411 0.82754 0.90939 0.97126 0.93523 1.21230 1.05038 1.31483 0.96830 0.93595 1.25469 0.97019 0.96163 0.98678 1.70038 1.14602 1.41679 1.28920 0.85885 0.77310 0.78625 0.81383 1.19926 1.21156 1.20338 1.62429 1.10343 1.52226 1.02074 1.22230 0.98698 0.94328 0.95957 1.21608 0.95647 0.95732 0.89068 0.95476 1.21554 0.98788 0.98752 0.94472 1.21135 0.96425 0.99561 0.93437 0.91336 1.21784 0.99950 0.99408 0.98822 1.21601 0.93358 0.99343 0.98863 1.20524 0.96124 0.95555 0.93979 1.21797 0.93279 1.01802 1.02245 1.21940 1.00748 0.95238 1.01909 1.21624 0.93597 1.00981 0.96831 0.94152 0.94723 0.94333 0.94193 0.94979 0.93290 0.93218 0.91113 0.96703 0.93586 0.94642 0.93959 0.90855 0.93050 0.92413 0.90333 0.91393 0.92536 0.92803 0.93588 0.92873 0.91373 0.92063 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.94 8.75 71.98 0.63 -4.31 16 2 C -0.13 -5.92 4.55 30.59 0.14 -5.78 16 3 C 0.20 10.19 1.71 44.17 0.08 10.26 16 4 H 0.05 2.63 4.95 -2.38 -0.01 2.62 16 5 C -0.51 -27.81 7.67 25.60 0.20 -27.62 16 6 H 0.05 2.54 6.32 -2.91 -0.02 2.52 16 7 C 0.03 1.44 4.31 84.66 0.37 1.80 16 8 N -0.91 -52.17 11.70 21.45 0.25 -51.92 16 9 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 N -0.55 -23.76 4.58 -876.17 -4.01 -27.77 16 14 C 0.04 1.40 8.51 127.69 1.09 2.49 16 15 C 0.09 3.15 1.42 44.92 0.06 3.22 16 16 H 0.03 1.02 4.85 -2.38 -0.01 1.00 16 17 C -0.10 -3.57 4.22 30.60 0.13 -3.45 16 18 C -0.09 -2.38 2.44 -10.79 -0.03 -2.41 16 19 H 0.07 1.87 6.43 -2.39 -0.02 1.86 16 20 C -0.14 -3.58 9.19 71.98 0.66 -2.91 16 21 C -0.09 -2.15 4.01 30.59 0.12 -2.03 16 22 C -0.06 -1.39 0.77 -52.18 -0.04 -1.43 16 23 C -0.13 -2.46 8.47 71.98 0.61 -1.85 16 24 C -0.14 -3.07 7.78 71.98 0.56 -2.51 16 25 C -0.09 -2.70 3.72 30.59 0.11 -2.59 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.03 1.68 8.01 -2.39 -0.02 1.67 16 28 H 0.04 1.94 6.60 -2.38 -0.02 1.92 16 29 H 0.04 1.80 6.67 -2.39 -0.02 1.78 16 30 H 0.03 1.36 6.48 -2.39 -0.02 1.35 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.05 2.08 6.44 -2.38 -0.02 2.07 16 33 H 0.07 2.34 6.05 -2.39 -0.01 2.33 16 34 H 0.01 0.56 6.35 -2.39 -0.02 0.54 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.03 1.53 6.18 -2.39 -0.01 1.52 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 1.16 4.81 -2.38 -0.01 1.14 16 46 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.73 6.28 -2.39 -0.01 1.72 16 49 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -58.51 345.23 3.84 -54.67 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.89 Total: 17.88 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 4.69 Total: -39.11 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -3.76 Total: -79.69 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -58.51 3.84 -54.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.490 kcal (2) G-P(sol) polarization free energy of solvation -58.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds