Wall clock time and date at job start Mon Mar 30 2020 07:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 H 1.09003 * 109.47544 * 298.84958 * 3 2 1 5 5 C 1.50703 * 109.47127 * 178.85445 * 3 2 1 6 6 H 1.07999 * 120.00025 * 242.86906 * 5 3 2 7 7 C 1.37873 * 120.00045 * 62.86111 * 5 3 2 8 8 N 1.31519 * 120.00331 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47253 * 89.99884 * 9 7 5 11 11 H 1.48498 * 109.46771 * 210.00213 * 9 7 5 12 12 H 1.48497 * 109.46849 * 329.99805 * 9 7 5 13 13 N 1.46893 * 109.47219 * 58.85316 * 3 2 1 14 14 C 1.46906 * 111.00219 * 167.96447 * 13 3 2 15 15 C 1.46908 * 110.99909 * 44.01027 * 13 3 2 16 16 H 1.08994 * 109.47202 * 308.22675 * 15 13 3 17 17 C 1.53002 * 109.46860 * 68.23282 * 15 13 3 18 18 C 1.53003 * 109.46768 * 179.97438 * 17 15 13 19 19 H 1.09001 * 109.46906 * 60.00084 * 18 17 15 20 20 C 1.52998 * 109.46756 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.47087 * 299.99599 * 18 17 15 22 22 C 1.52998 * 109.47291 * 60.00365 * 21 18 17 23 23 C 1.52997 * 109.47291 * 179.97438 * 22 21 18 24 24 C 1.53003 * 109.47338 * 59.99334 * 22 21 18 25 25 C 1.53003 * 109.46959 * 188.22560 * 15 13 3 26 26 H 1.08995 * 109.47088 * 184.91490 * 1 2 3 27 27 H 1.09003 * 109.46866 * 304.91607 * 1 2 3 28 28 H 1.08996 * 109.47192 * 64.91406 * 1 2 3 29 29 H 1.08999 * 109.46859 * 240.00027 * 2 1 3 30 30 H 1.08999 * 109.47151 * 120.00344 * 2 1 3 31 31 H 0.96998 * 120.00519 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46973 * 54.18365 * 14 13 3 33 33 H 1.08996 * 109.47092 * 294.18386 * 14 13 3 34 34 H 1.08998 * 109.46893 * 174.18091 * 14 13 3 35 35 H 1.09003 * 109.46550 * 299.99773 * 17 15 13 36 36 H 1.08992 * 109.47273 * 59.99998 * 17 15 13 37 37 H 1.09002 * 109.47005 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47081 * 299.99536 * 20 18 17 39 39 H 1.08994 * 109.47419 * 59.99968 * 20 18 17 40 40 H 1.08994 * 109.46996 * 299.99975 * 21 18 17 41 41 H 1.09002 * 109.46598 * 180.02562 * 21 18 17 42 42 H 1.09006 * 109.47200 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46598 * 299.99639 * 23 22 21 44 44 H 1.08994 * 109.46996 * 59.99610 * 23 22 21 45 45 H 1.08995 * 109.47458 * 300.00707 * 24 22 21 46 46 H 1.09004 * 109.46513 * 60.00145 * 24 22 21 47 47 H 1.08999 * 109.47147 * 179.97438 * 24 22 21 48 48 H 1.08992 * 109.47716 * 300.00334 * 25 15 13 49 49 H 1.09006 * 109.46956 * 60.00290 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6936 1.9504 -0.9001 5 6 3.5468 1.4427 0.0284 6 1 4.0710 1.8748 0.8680 7 6 4.2560 0.8910 -1.0173 8 7 3.6177 0.3642 -2.0394 9 14 6.1237 0.8906 -0.9818 10 1 6.6061 -0.3513 -0.3259 11 1 6.6452 0.9514 -2.3709 12 1 6.6046 2.0714 -0.2204 13 7 1.5278 2.1429 1.1853 14 6 2.2146 3.4276 1.3754 15 6 1.6429 1.3020 2.3844 16 1 1.1920 0.3289 2.1903 17 6 3.1200 1.1184 2.7386 18 6 3.2397 0.2431 3.9878 19 1 2.7888 -0.7302 3.7941 20 6 4.7168 0.0590 4.3417 21 6 2.5155 0.9177 5.1546 22 6 1.0385 1.1014 4.8003 23 6 0.3141 1.7754 5.9673 24 6 0.4054 -0.2648 4.5284 25 6 0.9186 1.9761 3.5514 26 1 -0.3633 -1.0238 0.0880 27 1 -0.3633 0.5882 0.8427 28 1 -0.3633 0.4357 -0.9307 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.1167 -0.0236 -2.7753 32 1 2.1421 4.0170 0.4613 33 1 3.2638 3.2476 1.6094 34 1 1.7472 3.9714 2.1963 35 1 3.6360 0.6382 1.9072 36 1 3.5707 2.0916 2.9328 37 1 4.8022 -0.5650 5.2314 38 1 5.2324 -0.4219 3.5104 39 1 5.1681 1.0320 4.5353 40 1 2.9665 1.8909 5.3482 41 1 2.6013 0.2943 6.0446 42 1 -0.7381 1.9066 5.7147 43 1 0.3995 1.1514 6.8570 44 1 0.7650 2.7485 6.1614 45 1 0.9214 -0.7453 3.6972 46 1 0.4909 -0.8883 5.4183 47 1 -0.6469 -0.1339 4.2765 48 1 1.3693 2.9493 3.7455 49 1 -0.1338 2.1070 3.2990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708746868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:30 Heat of formation + Delta-G solvation = -16.322738 kcal Electronic energy + Delta-G solvation = -23435.837625 eV Core-core repulsion = 20590.092328 eV Total energy + Delta-G solvation = -2845.745298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.89361 -36.80349 -33.55182 -32.78940 -31.34841 -29.44000 -27.14685 -26.81183 -26.31625 -25.48115 -24.89214 -22.40000 -20.75308 -20.10984 -18.42918 -17.85575 -16.46515 -15.37782 -14.74573 -14.64815 -14.33032 -13.89284 -13.81360 -13.31094 -13.03630 -12.80625 -12.54220 -12.27777 -12.13104 -11.87734 -11.64199 -11.62936 -11.46431 -11.35335 -11.24958 -10.97046 -10.83383 -10.75278 -10.53587 -10.46580 -10.36431 -10.24748 -10.16015 -9.95839 -9.69478 -9.47519 -9.38215 -9.07268 -8.68676 -8.29375 -6.98896 -5.96158 -4.05721 3.26387 3.34469 3.36800 4.40731 4.91229 4.96233 5.10042 5.27143 5.40294 5.42390 5.56574 5.63663 5.79657 5.83354 5.90795 5.93468 6.03120 6.06391 6.09645 6.14240 6.23273 6.23581 6.31463 6.36411 6.37690 6.41433 6.42864 6.45629 6.48452 6.61810 6.64709 6.66488 6.74341 6.77348 6.91823 6.93744 7.05932 7.12805 7.22420 7.35157 7.45342 7.71409 7.77767 8.04533 8.21736 8.43659 8.53597 9.02924 9.58405 11.03504 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.007710 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.224873 B = 3630.720229 C = 4261.871066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.213 3.787 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.072 0.928 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.535 5.535 14 C 0.034 3.966 15 C 0.088 3.912 16 H 0.086 0.914 17 C -0.160 4.160 18 C -0.093 4.093 19 H 0.066 0.934 20 C -0.144 4.144 21 C -0.098 4.098 22 C -0.063 4.063 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.099 4.099 26 H 0.025 0.975 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.112 0.888 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 0.192 12.361 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.106 3.894 4 H 0.057 0.943 5 C -0.581 4.581 6 H 0.090 0.910 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.708 3.292 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.257 5.257 14 C -0.115 4.115 15 C -0.021 4.021 16 H 0.104 0.896 17 C -0.198 4.198 18 C -0.112 4.112 19 H 0.084 0.916 20 C -0.201 4.201 21 C -0.136 4.136 22 C -0.064 4.064 23 C -0.195 4.195 24 C -0.200 4.200 25 C -0.137 4.137 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.351 0.218 12.068 12.830 hybrid contribution 2.053 -0.173 0.064 2.061 sum -2.298 0.046 12.132 12.348 Atomic orbital electron populations 1.21807 0.98884 0.98518 1.00947 1.21693 0.92133 0.99596 1.01836 1.19260 0.92105 0.90234 0.87765 0.94317 1.22031 0.92696 1.38347 1.05026 0.91048 1.24928 0.97726 0.95403 0.95430 1.69904 1.35021 1.38952 1.08465 0.86786 0.86773 0.78380 0.77265 1.20751 1.21303 1.20030 1.62690 1.55384 1.03913 1.03755 1.22183 0.97375 0.92322 0.99574 1.21667 0.93676 0.97377 0.89391 0.89603 1.22873 0.99448 0.99491 0.98001 1.21196 0.94615 0.99575 0.95779 0.91573 1.21802 0.96846 1.00919 1.00571 1.21623 0.94398 1.00101 0.97478 1.20501 0.94960 0.95664 0.95257 1.21846 1.00045 1.00038 0.97603 1.21952 1.00350 0.96312 1.01347 1.21652 1.00486 0.97963 0.93615 0.95633 0.92888 0.94152 0.89753 0.94369 0.93027 0.92960 0.94612 0.94294 0.87007 0.93092 0.93731 0.92704 0.93301 0.92653 0.93108 0.92936 0.93263 0.93099 0.91676 0.93554 0.93044 0.92706 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.41 37.16 0.35 -2.51 16 2 C -0.11 -2.61 4.67 -26.73 -0.12 -2.73 16 3 C 0.21 5.07 2.02 -68.87 -0.14 4.93 16 4 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.54 -13.73 5.45 -34.44 -0.19 -13.92 16 6 H 0.07 1.79 4.10 -52.49 -0.22 1.58 16 7 C 0.07 1.79 5.32 -17.82 -0.09 1.69 16 8 N -0.89 -24.49 11.54 55.43 0.64 -23.85 16 9 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.54 -10.99 4.19 -228.29 -0.96 -11.94 16 14 C 0.03 0.67 8.24 60.07 0.49 1.17 16 15 C 0.09 1.59 0.96 -67.71 -0.06 1.52 16 16 H 0.09 1.63 3.16 -51.93 -0.16 1.47 16 17 C -0.16 -2.94 2.68 -26.73 -0.07 -3.01 16 18 C -0.09 -1.43 2.44 -90.62 -0.22 -1.66 16 19 H 0.07 1.05 6.43 -51.93 -0.33 0.71 16 20 C -0.14 -2.11 9.19 37.16 0.34 -1.77 16 21 C -0.10 -1.34 4.01 -26.73 -0.11 -1.45 16 22 C -0.06 -0.84 0.77 -154.53 -0.12 -0.96 16 23 C -0.14 -1.59 8.47 37.16 0.31 -1.27 16 24 C -0.14 -1.86 7.78 37.16 0.29 -1.57 16 25 C -0.10 -1.54 3.89 -26.75 -0.10 -1.65 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.02 6.54 -51.93 -0.34 0.68 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 2.17 6.33 -51.93 -0.33 1.84 16 30 H 0.04 0.86 5.90 -51.93 -0.31 0.55 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.05 1.05 8.12 -51.93 -0.42 0.63 16 33 H 0.04 0.74 4.49 -51.93 -0.23 0.51 16 34 H 0.04 0.68 6.51 -51.93 -0.34 0.34 16 35 H 0.11 2.45 4.71 -51.93 -0.24 2.21 16 36 H 0.05 0.97 6.22 -51.93 -0.32 0.65 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.94 4.81 -51.93 -0.25 0.69 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.87 6.54 -51.93 -0.34 0.53 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -25.59 338.03 -8.58 -34.17 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.89 Total: 3.98 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 0.56 Total: -23.19 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.32 Total: -35.79 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -25.59 -8.58 -34.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.850 kcal (2) G-P(sol) polarization free energy of solvation -25.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds