Wall clock time and date at job start Mon Mar 30 2020 07:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 H 1.09003 * 109.47544 * 298.84958 * 3 2 1 5 5 C 1.50703 * 109.47127 * 178.85445 * 3 2 1 6 6 H 1.07999 * 120.00025 * 242.86906 * 5 3 2 7 7 C 1.37873 * 120.00045 * 62.86111 * 5 3 2 8 8 N 1.31519 * 120.00331 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47253 * 89.99884 * 9 7 5 11 11 H 1.48498 * 109.46771 * 210.00213 * 9 7 5 12 12 H 1.48497 * 109.46849 * 329.99805 * 9 7 5 13 13 N 1.46893 * 109.47219 * 58.85316 * 3 2 1 14 14 C 1.46906 * 111.00219 * 167.96447 * 13 3 2 15 15 C 1.46908 * 110.99909 * 44.01027 * 13 3 2 16 16 H 1.08994 * 109.47202 * 308.22675 * 15 13 3 17 17 C 1.53002 * 109.46860 * 68.23282 * 15 13 3 18 18 C 1.53003 * 109.46768 * 179.97438 * 17 15 13 19 19 H 1.09001 * 109.46906 * 60.00084 * 18 17 15 20 20 C 1.52998 * 109.46756 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.47087 * 299.99599 * 18 17 15 22 22 C 1.52998 * 109.47291 * 60.00365 * 21 18 17 23 23 C 1.52997 * 109.47291 * 179.97438 * 22 21 18 24 24 C 1.53003 * 109.47338 * 59.99334 * 22 21 18 25 25 C 1.53003 * 109.46959 * 188.22560 * 15 13 3 26 26 H 1.08995 * 109.47088 * 184.91490 * 1 2 3 27 27 H 1.09003 * 109.46866 * 304.91607 * 1 2 3 28 28 H 1.08996 * 109.47192 * 64.91406 * 1 2 3 29 29 H 1.08999 * 109.46859 * 240.00027 * 2 1 3 30 30 H 1.08999 * 109.47151 * 120.00344 * 2 1 3 31 31 H 0.96998 * 120.00519 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46973 * 54.18365 * 14 13 3 33 33 H 1.08996 * 109.47092 * 294.18386 * 14 13 3 34 34 H 1.08998 * 109.46893 * 174.18091 * 14 13 3 35 35 H 1.09003 * 109.46550 * 299.99773 * 17 15 13 36 36 H 1.08992 * 109.47273 * 59.99998 * 17 15 13 37 37 H 1.09002 * 109.47005 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47081 * 299.99536 * 20 18 17 39 39 H 1.08994 * 109.47419 * 59.99968 * 20 18 17 40 40 H 1.08994 * 109.46996 * 299.99975 * 21 18 17 41 41 H 1.09002 * 109.46598 * 180.02562 * 21 18 17 42 42 H 1.09006 * 109.47200 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46598 * 299.99639 * 23 22 21 44 44 H 1.08994 * 109.46996 * 59.99610 * 23 22 21 45 45 H 1.08995 * 109.47458 * 300.00707 * 24 22 21 46 46 H 1.09004 * 109.46513 * 60.00145 * 24 22 21 47 47 H 1.08999 * 109.47147 * 179.97438 * 24 22 21 48 48 H 1.08992 * 109.47716 * 300.00334 * 25 15 13 49 49 H 1.09006 * 109.46956 * 60.00290 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6936 1.9504 -0.9001 5 6 3.5468 1.4427 0.0284 6 1 4.0710 1.8748 0.8680 7 6 4.2560 0.8910 -1.0173 8 7 3.6177 0.3642 -2.0394 9 14 6.1237 0.8906 -0.9818 10 1 6.6061 -0.3513 -0.3259 11 1 6.6452 0.9514 -2.3709 12 1 6.6046 2.0714 -0.2204 13 7 1.5278 2.1429 1.1853 14 6 2.2146 3.4276 1.3754 15 6 1.6429 1.3020 2.3844 16 1 1.1920 0.3289 2.1903 17 6 3.1200 1.1184 2.7386 18 6 3.2397 0.2431 3.9878 19 1 2.7888 -0.7302 3.7941 20 6 4.7168 0.0590 4.3417 21 6 2.5155 0.9177 5.1546 22 6 1.0385 1.1014 4.8003 23 6 0.3141 1.7754 5.9673 24 6 0.4054 -0.2648 4.5284 25 6 0.9186 1.9761 3.5514 26 1 -0.3633 -1.0238 0.0880 27 1 -0.3633 0.5882 0.8427 28 1 -0.3633 0.4357 -0.9307 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.1167 -0.0236 -2.7753 32 1 2.1421 4.0170 0.4613 33 1 3.2638 3.2476 1.6094 34 1 1.7472 3.9714 2.1963 35 1 3.6360 0.6382 1.9072 36 1 3.5707 2.0916 2.9328 37 1 4.8022 -0.5650 5.2314 38 1 5.2324 -0.4219 3.5104 39 1 5.1681 1.0320 4.5353 40 1 2.9665 1.8909 5.3482 41 1 2.6013 0.2943 6.0446 42 1 -0.7381 1.9066 5.7147 43 1 0.3995 1.1514 6.8570 44 1 0.7650 2.7485 6.1614 45 1 0.9214 -0.7453 3.6972 46 1 0.4909 -0.8883 5.4183 47 1 -0.6469 -0.1339 4.2765 48 1 1.3693 2.9493 3.7455 49 1 -0.1338 2.1070 3.2990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708746868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:29 Heat of formation + Delta-G solvation = -28.584943 kcal Electronic energy + Delta-G solvation = -23436.369354 eV Core-core repulsion = 20590.092328 eV Total energy + Delta-G solvation = -2846.277027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28183 -38.33091 -34.75540 -34.65488 -33.17778 -30.90926 -28.68025 -28.06615 -27.40723 -26.87397 -26.57460 -24.18510 -22.38200 -21.39238 -20.00197 -19.16027 -18.39452 -17.09774 -16.18324 -16.12646 -15.77058 -15.33083 -15.21495 -14.80790 -14.53916 -14.19032 -14.04299 -13.56685 -13.44809 -13.30331 -13.19210 -13.06758 -12.84623 -12.73769 -12.66853 -12.53659 -12.47090 -12.26372 -12.11860 -11.96878 -11.84211 -11.74072 -11.47985 -11.44233 -11.25215 -11.04186 -10.87377 -10.67865 -10.43308 -10.22423 -8.76035 -7.96780 -6.13886 1.35390 1.38641 1.45492 2.41994 3.20868 3.52294 3.83032 3.98692 4.07423 4.24363 4.33006 4.48084 4.56233 4.57069 4.69572 4.72314 4.76297 4.78839 4.83295 4.85491 4.90486 4.93538 4.98801 5.00438 5.06967 5.07171 5.15944 5.16879 5.24559 5.25132 5.28434 5.31062 5.34949 5.41467 5.42664 5.53906 5.54477 5.61382 5.67615 5.70231 5.77189 5.85273 5.89960 6.11586 6.31786 6.50265 6.82918 7.04808 7.52660 8.98369 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.007710 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.224873 B = 3630.720229 C = 4261.871066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C 0.220 3.780 4 H -0.003 1.003 5 C -0.536 4.536 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.934 3.066 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.537 5.537 14 C 0.039 3.961 15 C 0.090 3.910 16 H 0.078 0.922 17 C -0.151 4.151 18 C -0.090 4.090 19 H 0.063 0.937 20 C -0.142 4.142 21 C -0.093 4.093 22 C -0.061 4.061 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.092 4.092 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.257 0.743 32 H 0.039 0.961 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 0.203 15.259 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.015 0.985 5 C -0.575 4.575 6 H 0.090 0.910 7 C -0.180 4.180 8 N -0.556 5.556 9 Si 0.761 3.239 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.259 5.259 14 C -0.109 4.109 15 C -0.018 4.018 16 H 0.096 0.904 17 C -0.189 4.189 18 C -0.109 4.109 19 H 0.081 0.919 20 C -0.200 4.200 21 C -0.130 4.130 22 C -0.061 4.061 23 C -0.191 4.191 24 C -0.198 4.198 25 C -0.130 4.130 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.849 0.236 14.985 15.752 hybrid contribution 2.187 -0.158 -0.822 2.341 sum -2.662 0.078 14.164 14.412 Atomic orbital electron populations 1.21671 0.96379 1.00010 1.00879 1.21490 0.94276 0.98401 1.00123 1.18998 0.91372 0.90657 0.87735 0.98536 1.22283 0.93690 1.37013 1.04524 0.90987 1.25568 1.01256 0.95717 0.95461 1.70035 1.36158 1.40275 1.09084 0.85927 0.82661 0.78355 0.76967 1.20474 1.21458 1.19658 1.62620 1.55068 1.04350 1.03856 1.22152 0.96831 0.91976 0.99955 1.21698 0.93924 0.96906 0.89275 0.90414 1.22632 0.98915 0.99144 0.98245 1.21152 0.95647 0.98885 0.95220 0.91908 1.21783 0.95947 1.01326 1.00899 1.21579 0.94118 1.00226 0.97068 1.20492 0.95218 0.95545 0.94854 1.21792 0.99976 1.00230 0.97054 1.21933 1.00273 0.96196 1.01441 1.21586 0.99847 0.98090 0.93444 0.93483 0.92014 0.94891 0.93000 0.94371 0.93337 0.94216 0.95902 0.91493 0.90928 0.93941 0.91344 0.94486 0.93143 0.92614 0.91025 0.92461 0.91725 0.92799 0.93554 0.91805 0.92640 0.92803 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 9.41 71.98 0.68 -4.53 16 2 C -0.10 -4.89 4.67 30.60 0.14 -4.75 16 3 C 0.22 10.82 2.02 44.17 0.09 10.90 16 4 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 5 C -0.54 -27.98 5.45 25.60 0.14 -27.84 16 6 H 0.07 3.70 4.10 -2.91 -0.01 3.69 16 7 C 0.02 1.04 5.32 84.65 0.45 1.49 16 8 N -0.92 -52.56 11.54 21.45 0.25 -52.31 16 9 Si 0.93 43.59 29.54 68.60 2.03 45.62 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.54 -22.15 4.19 -876.17 -3.67 -25.82 16 14 C 0.04 1.55 8.24 127.69 1.05 2.60 16 15 C 0.09 3.20 0.96 44.92 0.04 3.25 16 16 H 0.08 2.91 3.16 -2.39 -0.01 2.90 16 17 C -0.15 -5.51 2.68 30.60 0.08 -5.42 16 18 C -0.09 -2.64 2.44 -10.79 -0.03 -2.67 16 19 H 0.06 1.90 6.43 -2.39 -0.02 1.88 16 20 C -0.14 -3.92 9.19 71.98 0.66 -3.26 16 21 C -0.09 -2.22 4.01 30.59 0.12 -2.09 16 22 C -0.06 -1.42 0.77 -52.20 -0.04 -1.46 16 23 C -0.13 -2.52 8.47 71.98 0.61 -1.91 16 24 C -0.14 -3.27 7.78 71.98 0.56 -2.71 16 25 C -0.09 -2.65 3.89 30.58 0.12 -2.53 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 2.31 6.54 -2.39 -0.02 2.29 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 2.78 6.33 -2.39 -0.02 2.76 16 30 H 0.04 1.75 5.90 -2.39 -0.01 1.74 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.04 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.02 0.95 4.49 -2.39 -0.01 0.94 16 34 H 0.07 2.23 6.51 -2.39 -0.02 2.22 16 35 H 0.07 3.25 4.71 -2.39 -0.01 3.24 16 36 H 0.04 1.60 6.22 -2.39 -0.01 1.58 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.25 4.81 -2.39 -0.01 1.23 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.05 1.57 6.54 -2.39 -0.02 1.55 16 49 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -56.44 338.03 4.19 -52.26 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.90 Total: 21.20 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 4.68 Total: -40.94 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -3.42 Total: -78.13 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -56.44 4.19 -52.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.673 kcal (2) G-P(sol) polarization free energy of solvation -56.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds