Wall clock time and date at job start Mon Mar 30 2020 07:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46808 * 2 1 4 4 H 1.09001 * 109.47491 * 305.32672 * 3 2 1 5 5 C 1.50707 * 109.46945 * 185.32900 * 3 2 1 6 6 H 1.07998 * 119.99695 * 240.00478 * 5 3 2 7 7 C 1.37870 * 120.00012 * 60.00034 * 5 3 2 8 8 N 1.31513 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99977 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47072 * 60.00401 * 9 7 5 11 11 H 1.48504 * 109.46887 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47316 * 299.99952 * 9 7 5 13 13 N 1.46900 * 109.47256 * 65.33063 * 3 2 1 14 14 C 1.46898 * 111.00027 * 40.17149 * 13 3 2 15 15 C 1.47270 * 110.99901 * 276.21864 * 13 3 2 16 16 H 1.08678 * 108.80432 * 53.20879 * 15 13 3 17 17 C 1.52761 * 109.10571 * 292.75915 * 15 13 3 18 18 C 1.52206 * 110.74509 * 180.02562 * 17 15 13 19 19 H 1.11138 * 106.96778 * 169.73948 * 18 17 15 20 20 C 1.52839 * 110.61422 * 285.47074 * 18 17 15 21 21 C 1.51523 * 113.14885 * 51.69036 * 18 17 15 22 22 C 1.51857 * 115.72294 * 316.61516 * 21 18 17 23 23 C 1.53111 * 111.03990 * 279.91115 * 22 21 18 24 24 C 1.54416 * 107.99796 * 162.38078 * 22 21 18 25 25 C 1.52472 * 112.43885 * 43.68395 * 22 21 18 26 26 H 1.08992 * 109.46975 * 163.18323 * 1 2 3 27 27 H 1.08999 * 109.46759 * 283.18346 * 1 2 3 28 28 H 1.09000 * 109.47274 * 43.18225 * 1 2 3 29 29 H 1.08995 * 109.47053 * 240.00243 * 2 1 3 30 30 H 1.08995 * 109.47249 * 120.00037 * 2 1 3 31 31 H 0.97000 * 120.00324 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47578 * 296.04848 * 14 13 3 33 33 H 1.09000 * 109.46838 * 56.05029 * 14 13 3 34 34 H 1.09000 * 109.47085 * 176.04496 * 14 13 3 35 35 H 1.09318 * 109.20076 * 300.81518 * 17 15 13 36 36 H 1.09334 * 109.18330 * 59.31593 * 17 15 13 37 37 H 1.08999 * 109.47218 * 60.00393 * 20 18 17 38 38 H 1.09004 * 109.46237 * 180.02562 * 20 18 17 39 39 H 1.08994 * 109.47130 * 299.99967 * 20 18 17 40 40 H 1.10207 * 108.78266 * 194.11221 * 21 18 17 41 41 H 1.10252 * 108.74459 * 79.04482 * 21 18 17 42 42 H 1.08998 * 109.47317 * 185.13752 * 23 22 21 43 43 H 1.09003 * 109.46915 * 65.13547 * 23 22 21 44 44 H 1.09000 * 109.46986 * 305.13698 * 23 22 21 45 45 H 1.08995 * 109.47157 * 179.84261 * 24 22 21 46 46 H 1.09004 * 109.46901 * 299.84173 * 24 22 21 47 47 H 1.08994 * 109.47062 * 59.84008 * 24 22 21 48 48 H 1.09298 * 109.43616 * 67.91517 * 25 22 21 49 49 H 1.09304 * 109.42414 * 186.78328 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9832 -0.8384 5 6 3.5413 1.4446 -0.1320 6 1 4.1507 1.8876 0.6418 7 6 4.1366 0.8808 -1.2404 8 7 3.3945 0.3408 -2.1823 9 14 5.9975 0.8828 -1.4036 10 1 6.5953 0.1457 -0.2614 11 1 6.3835 0.2208 -2.6757 12 1 6.4930 2.2826 -1.4032 13 7 1.6582 2.0968 1.2586 14 6 1.8126 1.1805 2.3963 15 6 0.2836 2.6204 1.1854 16 1 -0.3809 1.8180 0.8761 17 6 0.2382 3.7665 0.1763 18 6 -1.1690 4.3370 0.0715 19 1 -1.0962 5.2724 -0.5242 20 6 -2.0768 3.3894 -0.7122 21 6 -1.7657 4.7015 1.4157 22 6 -1.5497 3.6910 2.5285 23 6 -2.5450 2.5326 2.4200 24 6 -1.8113 4.4006 3.8748 25 6 -0.1233 3.1530 2.5573 26 1 -0.3633 -0.9837 -0.2973 27 1 -0.3633 0.2344 1.0006 28 1 -0.3634 0.7493 -0.7032 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8133 -0.0555 -2.9623 32 1 1.1250 0.3424 2.2838 33 1 2.8367 0.8087 2.4269 34 1 1.5907 1.7107 3.3225 35 1 0.9298 4.5517 0.4928 36 1 0.5570 3.3967 -0.8019 37 1 -2.1232 2.4268 -0.2030 38 1 -3.0779 3.8157 -0.7762 39 1 -1.6765 3.2504 -1.7164 40 1 -2.8491 4.8608 1.2916 41 1 -1.3499 5.6708 1.7368 42 1 -2.4287 1.8718 3.2790 43 1 -2.3541 1.9742 1.5035 44 1 -3.5609 2.9271 2.4001 45 1 -1.6653 3.6944 4.6921 46 1 -1.1181 5.2343 3.9868 47 1 -2.8351 4.7740 3.8957 48 1 0.5612 3.9527 2.8514 49 1 -0.0536 2.3470 3.2924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708746871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:32 Heat of formation + Delta-G solvation = -15.474784 kcal Electronic energy + Delta-G solvation = -23162.605073 eV Core-core repulsion = 20316.896545 eV Total energy + Delta-G solvation = -2845.708528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78038 -36.96573 -33.80266 -32.85740 -31.07988 -29.35720 -27.58657 -27.23905 -26.44403 -25.74880 -24.44450 -22.93903 -20.52388 -20.16722 -18.75518 -17.63541 -16.31956 -15.58403 -14.92762 -14.45914 -14.16108 -14.05396 -13.88218 -13.66182 -13.29412 -12.97203 -12.75204 -12.59761 -12.13583 -12.02057 -11.75303 -11.67291 -11.49024 -11.37025 -11.14038 -10.92028 -10.81430 -10.78184 -10.68197 -10.52050 -10.45043 -10.28722 -10.16120 -9.98873 -9.86646 -9.66109 -9.39885 -9.19037 -8.81840 -8.24238 -6.86060 -5.93022 -3.95648 3.36849 3.40837 3.44367 4.46734 4.77265 4.82893 4.93064 5.23239 5.33216 5.37119 5.39007 5.47401 5.66655 5.71563 5.76769 5.83046 5.84792 5.89687 5.99217 6.02603 6.05191 6.12673 6.13996 6.21646 6.22590 6.26031 6.30553 6.38031 6.39928 6.43510 6.48088 6.50190 6.63183 6.65884 6.75948 6.80232 6.88369 6.91673 7.03959 7.10158 7.36652 7.59214 7.80634 7.95893 8.33668 8.52035 8.72704 9.11630 9.68866 11.13148 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.005781 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.383055 B = 4842.018560 C = 4971.793647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.216 3.784 4 H 0.041 0.959 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.532 5.532 14 C 0.031 3.969 15 C 0.068 3.932 16 H 0.061 0.939 17 C -0.103 4.103 18 C -0.083 4.083 19 H 0.055 0.945 20 C -0.148 4.148 21 C -0.093 4.093 22 C -0.055 4.055 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.102 4.102 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.259 0.741 32 H 0.018 0.982 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 5.274 7.431 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.109 3.891 4 H 0.059 0.941 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.255 5.255 14 C -0.118 4.118 15 C -0.040 4.040 16 H 0.079 0.921 17 C -0.141 4.141 18 C -0.102 4.102 19 H 0.073 0.927 20 C -0.205 4.205 21 C -0.131 4.131 22 C -0.056 4.056 23 C -0.200 4.200 24 C -0.201 4.201 25 C -0.139 4.139 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.285 5.606 7.326 14.576 hybrid contribution 0.495 -0.746 -0.284 0.940 sum -10.789 4.860 7.042 13.770 Atomic orbital electron populations 1.22132 0.99761 0.99481 0.99363 1.22259 0.91475 1.02601 1.02967 1.19373 0.95272 0.88443 0.85979 0.94131 1.21143 0.91253 1.35904 1.04755 0.92210 1.24917 0.97910 0.95682 0.95894 1.69864 1.34689 1.39497 1.09599 0.86634 0.86000 0.78140 0.77025 1.20496 1.21539 1.20365 1.62457 1.20508 1.37245 1.05313 1.22303 1.01204 0.94640 0.93607 1.21827 0.91633 0.96501 0.94081 0.92118 1.21426 0.94330 0.98076 1.00220 1.20778 0.95666 0.98527 0.95187 0.92679 1.21936 0.98481 1.00033 1.00023 1.21242 0.99999 0.97808 0.94012 1.20363 0.95738 0.95075 0.94424 1.22023 0.98018 0.97995 1.01938 1.22271 1.00804 1.00129 0.96878 1.21623 0.94205 1.00371 0.97741 0.95031 0.94149 0.93447 0.88542 0.94218 0.93117 0.96347 0.91701 0.93687 0.91974 0.91287 0.92333 0.93500 0.92749 0.92967 0.92859 0.93138 0.92066 0.93275 0.92978 0.92906 0.93262 0.91898 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.09 37.16 0.30 -2.66 16 2 C -0.15 -3.60 4.72 -26.73 -0.13 -3.72 16 3 C 0.22 5.26 1.75 -68.86 -0.12 5.14 16 4 H 0.04 1.09 5.77 -51.93 -0.30 0.79 16 5 C -0.49 -13.45 8.29 -34.44 -0.29 -13.73 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.40 11.29 55.43 0.63 -24.77 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -11.17 4.45 -228.48 -1.02 -12.19 16 14 C 0.03 0.60 7.53 60.06 0.45 1.05 16 15 C 0.07 1.19 1.46 -67.79 -0.10 1.09 16 16 H 0.06 1.09 1.78 -52.11 -0.09 1.00 16 17 C -0.10 -1.78 4.62 -27.26 -0.13 -1.91 16 18 C -0.08 -1.15 2.60 -91.85 -0.24 -1.39 16 19 H 0.05 0.74 8.29 -50.70 -0.42 0.32 16 20 C -0.15 -1.98 8.90 37.08 0.33 -1.65 16 21 C -0.09 -1.15 4.13 -28.06 -0.12 -1.27 16 22 C -0.06 -0.69 0.71 -154.56 -0.11 -0.80 16 23 C -0.14 -1.71 8.02 37.22 0.30 -1.41 16 24 C -0.14 -1.56 8.09 37.90 0.31 -1.25 16 25 C -0.10 -1.53 3.25 -27.16 -0.09 -1.62 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.74 5.20 -51.93 -0.27 0.47 16 28 H 0.05 0.94 7.45 -51.93 -0.39 0.55 16 29 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 30 H 0.04 0.92 6.10 -51.93 -0.32 0.60 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.02 0.35 5.16 -51.93 -0.27 0.08 16 33 H 0.06 1.35 7.70 -51.93 -0.40 0.95 16 34 H 0.04 0.77 6.14 -51.93 -0.32 0.45 16 35 H 0.06 1.13 8.17 -51.75 -0.42 0.70 16 36 H 0.07 1.37 6.19 -51.74 -0.32 1.05 16 37 H 0.06 0.82 4.98 -51.93 -0.26 0.56 16 38 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.59 7.87 -51.24 -0.40 0.18 16 41 H 0.05 0.64 7.92 -51.21 -0.41 0.24 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.80 4.76 -51.93 -0.25 0.56 16 44 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 1.00 8.11 -51.76 -0.42 0.58 16 49 H 0.06 0.88 6.17 -51.76 -0.32 0.56 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -27.20 338.75 -8.81 -36.02 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.79 Total: 2.01 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 0.29 Total: -22.68 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.39 Total: -36.96 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.20 -8.81 -36.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.542 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds