Wall clock time and date at job start Mon Mar 30 2020 07:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46808 * 2 1 4 4 H 1.09001 * 109.47491 * 305.32672 * 3 2 1 5 5 C 1.50707 * 109.46945 * 185.32900 * 3 2 1 6 6 H 1.07998 * 119.99695 * 240.00478 * 5 3 2 7 7 C 1.37870 * 120.00012 * 60.00034 * 5 3 2 8 8 N 1.31513 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99977 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47072 * 60.00401 * 9 7 5 11 11 H 1.48504 * 109.46887 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47316 * 299.99952 * 9 7 5 13 13 N 1.46900 * 109.47256 * 65.33063 * 3 2 1 14 14 C 1.46898 * 111.00027 * 40.17149 * 13 3 2 15 15 C 1.47270 * 110.99901 * 276.21864 * 13 3 2 16 16 H 1.08678 * 108.80432 * 53.20879 * 15 13 3 17 17 C 1.52761 * 109.10571 * 292.75915 * 15 13 3 18 18 C 1.52206 * 110.74509 * 180.02562 * 17 15 13 19 19 H 1.11138 * 106.96778 * 169.73948 * 18 17 15 20 20 C 1.52839 * 110.61422 * 285.47074 * 18 17 15 21 21 C 1.51523 * 113.14885 * 51.69036 * 18 17 15 22 22 C 1.51857 * 115.72294 * 316.61516 * 21 18 17 23 23 C 1.53111 * 111.03990 * 279.91115 * 22 21 18 24 24 C 1.54416 * 107.99796 * 162.38078 * 22 21 18 25 25 C 1.52472 * 112.43885 * 43.68395 * 22 21 18 26 26 H 1.08992 * 109.46975 * 163.18323 * 1 2 3 27 27 H 1.08999 * 109.46759 * 283.18346 * 1 2 3 28 28 H 1.09000 * 109.47274 * 43.18225 * 1 2 3 29 29 H 1.08995 * 109.47053 * 240.00243 * 2 1 3 30 30 H 1.08995 * 109.47249 * 120.00037 * 2 1 3 31 31 H 0.97000 * 120.00324 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47578 * 296.04848 * 14 13 3 33 33 H 1.09000 * 109.46838 * 56.05029 * 14 13 3 34 34 H 1.09000 * 109.47085 * 176.04496 * 14 13 3 35 35 H 1.09318 * 109.20076 * 300.81518 * 17 15 13 36 36 H 1.09334 * 109.18330 * 59.31593 * 17 15 13 37 37 H 1.08999 * 109.47218 * 60.00393 * 20 18 17 38 38 H 1.09004 * 109.46237 * 180.02562 * 20 18 17 39 39 H 1.08994 * 109.47130 * 299.99967 * 20 18 17 40 40 H 1.10207 * 108.78266 * 194.11221 * 21 18 17 41 41 H 1.10252 * 108.74459 * 79.04482 * 21 18 17 42 42 H 1.08998 * 109.47317 * 185.13752 * 23 22 21 43 43 H 1.09003 * 109.46915 * 65.13547 * 23 22 21 44 44 H 1.09000 * 109.46986 * 305.13698 * 23 22 21 45 45 H 1.08995 * 109.47157 * 179.84261 * 24 22 21 46 46 H 1.09004 * 109.46901 * 299.84173 * 24 22 21 47 47 H 1.08994 * 109.47062 * 59.84008 * 24 22 21 48 48 H 1.09298 * 109.43616 * 67.91517 * 25 22 21 49 49 H 1.09304 * 109.42414 * 186.78328 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9832 -0.8384 5 6 3.5413 1.4446 -0.1320 6 1 4.1507 1.8876 0.6418 7 6 4.1366 0.8808 -1.2404 8 7 3.3945 0.3408 -2.1823 9 14 5.9975 0.8828 -1.4036 10 1 6.5953 0.1457 -0.2614 11 1 6.3835 0.2208 -2.6757 12 1 6.4930 2.2826 -1.4032 13 7 1.6582 2.0968 1.2586 14 6 1.8126 1.1805 2.3963 15 6 0.2836 2.6204 1.1854 16 1 -0.3809 1.8180 0.8761 17 6 0.2382 3.7665 0.1763 18 6 -1.1690 4.3370 0.0715 19 1 -1.0962 5.2724 -0.5242 20 6 -2.0768 3.3894 -0.7122 21 6 -1.7657 4.7015 1.4157 22 6 -1.5497 3.6910 2.5285 23 6 -2.5450 2.5326 2.4200 24 6 -1.8113 4.4006 3.8748 25 6 -0.1233 3.1530 2.5573 26 1 -0.3633 -0.9837 -0.2973 27 1 -0.3633 0.2344 1.0006 28 1 -0.3634 0.7493 -0.7032 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8133 -0.0555 -2.9623 32 1 1.1250 0.3424 2.2838 33 1 2.8367 0.8087 2.4269 34 1 1.5907 1.7107 3.3225 35 1 0.9298 4.5517 0.4928 36 1 0.5570 3.3967 -0.8019 37 1 -2.1232 2.4268 -0.2030 38 1 -3.0779 3.8157 -0.7762 39 1 -1.6765 3.2504 -1.7164 40 1 -2.8491 4.8608 1.2916 41 1 -1.3499 5.6708 1.7368 42 1 -2.4287 1.8718 3.2790 43 1 -2.3541 1.9742 1.5035 44 1 -3.5609 2.9271 2.4001 45 1 -1.6653 3.6944 4.6921 46 1 -1.1181 5.2343 3.9868 47 1 -2.8351 4.7740 3.8957 48 1 0.5612 3.9527 2.8514 49 1 -0.0536 2.3470 3.2924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708746871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:31 Heat of formation + Delta-G solvation = -29.426047 kcal Electronic energy + Delta-G solvation = -23163.210045 eV Core-core repulsion = 20316.896545 eV Total energy + Delta-G solvation = -2846.313500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09459 -38.48908 -34.94313 -34.75682 -32.83991 -30.86236 -29.21003 -28.33624 -27.38279 -27.23625 -25.95710 -24.77367 -21.99175 -21.45052 -20.40225 -18.86713 -18.31705 -17.10161 -16.59363 -16.07395 -15.59697 -15.17993 -15.13804 -15.00871 -14.72762 -14.48729 -14.08683 -13.93772 -13.40078 -13.29685 -13.17413 -13.05936 -12.87744 -12.80767 -12.75055 -12.51484 -12.45416 -12.22698 -12.10849 -11.89125 -11.88164 -11.74193 -11.62793 -11.45303 -11.38932 -11.06022 -10.88380 -10.73016 -10.53968 -10.31223 -8.55343 -8.04775 -6.14795 1.41794 1.42883 1.50511 2.44962 3.21866 3.42132 3.77523 3.84005 4.04627 4.25776 4.28928 4.36008 4.40617 4.44454 4.49897 4.55589 4.61967 4.65934 4.73487 4.78179 4.85830 4.89519 4.92798 4.95194 5.01705 5.03652 5.09312 5.13060 5.13926 5.17215 5.23102 5.27229 5.27651 5.32934 5.36359 5.46573 5.50319 5.51484 5.61196 5.67471 5.68918 5.72588 5.82650 5.92722 6.38648 6.67504 6.91530 7.00591 7.54136 8.99175 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.005781 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.383055 B = 4842.018560 C = 4971.793647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.225 3.775 4 H 0.010 0.990 5 C -0.511 4.511 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.546 5.546 14 C 0.036 3.964 15 C 0.070 3.930 16 H 0.061 0.939 17 C -0.098 4.098 18 C -0.078 4.078 19 H 0.060 0.940 20 C -0.145 4.145 21 C -0.093 4.093 22 C -0.054 4.054 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.095 4.095 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.259 0.741 32 H 0.023 0.977 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.053 0.947 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 5.897 8.984 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.117 3.883 4 H 0.028 0.972 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.270 5.270 14 C -0.112 4.112 15 C -0.038 4.038 16 H 0.079 0.921 17 C -0.136 4.136 18 C -0.097 4.097 19 H 0.079 0.921 20 C -0.202 4.202 21 C -0.130 4.130 22 C -0.055 4.055 23 C -0.199 4.199 24 C -0.196 4.196 25 C -0.132 4.132 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.015 6.234 8.893 16.951 hybrid contribution 1.046 -0.914 -0.772 1.589 sum -11.969 5.320 8.121 15.412 Atomic orbital electron populations 1.21962 0.96795 1.00213 1.00342 1.22072 0.94091 1.01377 1.01067 1.19059 0.93615 0.88847 0.86736 0.97175 1.21443 0.93019 1.35879 1.04605 0.93459 1.25616 1.01968 0.95414 0.95646 1.69998 1.36154 1.39962 1.09872 0.85707 0.81179 0.78116 0.77150 1.19914 1.21005 1.20144 1.62361 1.23168 1.37220 1.04253 1.22266 1.00035 0.94835 0.94045 1.21883 0.89551 0.96348 0.95980 0.92134 1.21367 0.96515 0.97575 0.98096 1.20744 0.93549 0.98587 0.96857 0.92111 1.21910 0.99547 0.99798 0.98923 1.21232 1.01230 0.97899 0.92630 1.20346 0.93921 0.95540 0.95672 1.22017 0.98786 0.97648 1.01412 1.22215 1.01829 0.99978 0.95579 1.21573 0.96000 1.00078 0.95596 0.93564 0.92328 0.94040 0.91909 0.94460 0.93204 0.95892 0.93855 0.91015 0.93534 0.94944 0.92891 0.90935 0.94279 0.90704 0.92371 0.92705 0.93458 0.91398 0.92591 0.93023 0.91566 0.92858 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.09 71.98 0.58 -4.74 16 2 C -0.15 -7.02 4.72 30.60 0.14 -6.88 16 3 C 0.22 11.38 1.75 44.17 0.08 11.46 16 4 H 0.01 0.59 5.77 -2.39 -0.01 0.58 16 5 C -0.51 -28.90 8.29 25.60 0.21 -28.69 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.65 5.29 84.65 0.45 1.10 16 8 N -0.92 -53.69 11.29 21.44 0.24 -53.45 16 9 Si 0.95 45.00 29.54 68.60 2.03 47.02 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 N -0.55 -23.36 4.45 -876.77 -3.90 -27.27 16 14 C 0.04 1.40 7.53 127.69 0.96 2.36 16 15 C 0.07 2.45 1.46 44.66 0.07 2.51 16 16 H 0.06 2.14 1.78 -2.56 0.00 2.14 16 17 C -0.10 -3.47 4.62 30.25 0.14 -3.33 16 18 C -0.08 -2.10 2.60 -11.59 -0.03 -2.13 16 19 H 0.06 1.56 8.29 -1.23 -0.01 1.55 16 20 C -0.14 -3.69 8.90 71.93 0.64 -3.05 16 21 C -0.09 -2.03 4.13 29.73 0.12 -1.90 16 22 C -0.05 -1.20 0.71 -52.21 -0.04 -1.23 16 23 C -0.14 -2.91 8.02 72.02 0.58 -2.33 16 24 C -0.14 -2.51 8.09 72.46 0.59 -1.92 16 25 C -0.09 -2.69 3.25 30.32 0.10 -2.59 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 2.07 5.20 -2.39 -0.01 2.05 16 28 H 0.04 1.65 7.45 -2.39 -0.02 1.64 16 29 H 0.06 3.45 5.94 -2.39 -0.01 3.44 16 30 H 0.04 1.76 6.10 -2.39 -0.01 1.74 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.02 0.85 5.16 -2.39 -0.01 0.84 16 33 H 0.04 1.82 7.70 -2.39 -0.02 1.81 16 34 H 0.07 2.35 6.14 -2.39 -0.01 2.33 16 35 H 0.05 1.74 8.17 -2.22 -0.02 1.73 16 36 H 0.03 1.37 6.19 -2.21 -0.01 1.35 16 37 H 0.05 1.41 4.98 -2.39 -0.01 1.40 16 38 H 0.07 1.47 8.05 -2.39 -0.02 1.45 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.36 7.87 -1.74 -0.01 1.35 16 41 H 0.06 1.23 7.92 -1.72 -0.01 1.22 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.11 4.76 -2.39 -0.01 1.10 16 44 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.05 0.95 8.06 -2.38 -0.02 0.93 16 47 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 1.61 8.11 -2.23 -0.02 1.60 16 49 H 0.06 1.70 6.17 -2.23 -0.01 1.68 16 Total: -1.00 -60.28 338.75 3.88 -56.40 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.93 Total: 18.67 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 4.59 Total: -41.38 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -3.66 Total: -80.71 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -60.28 3.88 -56.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.976 kcal (2) G-P(sol) polarization free energy of solvation -60.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds