Wall clock time and date at job start Mon Mar 30 2020 07:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 H 1.08999 * 109.46976 * 302.15138 * 3 2 1 5 5 C 1.50702 * 109.46943 * 182.15678 * 3 2 1 6 6 H 1.08004 * 119.99938 * 242.79152 * 5 3 2 7 7 C 1.37880 * 120.00101 * 62.78965 * 5 3 2 8 8 N 1.31511 * 119.99995 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99826 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47156 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46930 * 210.00287 * 9 7 5 12 12 H 1.48498 * 109.47455 * 330.00250 * 9 7 5 13 13 N 1.46900 * 109.46963 * 62.15555 * 3 2 1 14 14 C 1.46904 * 110.99705 * 168.74756 * 13 3 2 15 15 C 1.47280 * 110.99901 * 44.79600 * 13 3 2 16 16 H 1.08666 * 108.82078 * 308.38558 * 15 13 3 17 17 C 1.52772 * 109.09038 * 68.85635 * 15 13 3 18 18 C 1.52204 * 110.72569 * 179.97438 * 17 15 13 19 19 H 1.11139 * 106.98161 * 190.20625 * 18 17 15 20 20 C 1.52837 * 110.62909 * 74.46438 * 18 17 15 21 21 C 1.51530 * 113.14148 * 308.26492 * 18 17 15 22 22 C 1.51842 * 115.72708 * 43.38832 * 21 18 17 23 23 C 1.54413 * 108.00680 * 197.63796 * 22 21 18 24 24 C 1.53116 * 111.02874 * 80.11529 * 22 21 18 25 25 C 1.52472 * 112.45048 * 316.34990 * 22 21 18 26 26 H 1.09003 * 109.46862 * 55.15538 * 1 2 3 27 27 H 1.09001 * 109.47021 * 175.15387 * 1 2 3 28 28 H 1.08996 * 109.46979 * 295.15328 * 1 2 3 29 29 H 1.09002 * 109.47379 * 239.99820 * 2 1 3 30 30 H 1.08997 * 109.47210 * 119.99864 * 2 1 3 31 31 H 0.97002 * 120.00129 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46858 * 61.97541 * 14 13 3 33 33 H 1.08995 * 109.46812 * 181.97608 * 14 13 3 34 34 H 1.08994 * 109.46972 * 301.97612 * 14 13 3 35 35 H 1.09335 * 109.18075 * 300.67461 * 17 15 13 36 36 H 1.09313 * 109.22021 * 59.20795 * 17 15 13 37 37 H 1.09004 * 109.47615 * 293.00358 * 20 18 17 38 38 H 1.09004 * 109.47289 * 53.00389 * 20 18 17 39 39 H 1.08997 * 109.47640 * 172.99895 * 20 18 17 40 40 H 1.10241 * 108.73735 * 280.98243 * 21 18 17 41 41 H 1.10211 * 108.79832 * 165.91762 * 21 18 17 42 42 H 1.09000 * 109.47564 * 181.69342 * 23 22 21 43 43 H 1.09005 * 109.46838 * 301.69218 * 23 22 21 44 44 H 1.08998 * 109.47716 * 61.68631 * 23 22 21 45 45 H 1.08994 * 109.47495 * 294.86031 * 24 22 21 46 46 H 1.09001 * 109.46791 * 54.85827 * 24 22 21 47 47 H 1.09000 * 109.47272 * 174.85702 * 24 22 21 48 48 H 1.09302 * 109.43180 * 292.04043 * 25 22 21 49 49 H 1.09313 * 109.41592 * 173.17609 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6455 1.9673 -0.8701 5 6 3.5461 1.4428 -0.0535 6 1 4.1154 1.8601 0.7640 7 6 4.1973 0.9103 -1.1460 8 7 3.5041 0.4026 -2.1416 9 14 6.0640 0.9114 -1.2125 10 1 6.5817 -0.3412 -0.6058 11 1 6.5089 0.9971 -2.6267 12 1 6.5856 2.0792 -0.4579 13 7 1.5933 2.1198 1.2246 14 6 2.2765 3.4095 1.3920 15 6 1.7906 1.2609 2.4047 16 1 1.3396 0.2912 2.2119 17 6 3.2879 1.1082 2.6669 18 6 3.5348 0.2257 3.8821 19 1 4.6154 0.3072 4.1283 20 6 3.2732 -1.2417 3.5439 21 6 2.7570 0.6660 5.1057 22 6 1.3096 1.0552 4.8619 23 6 0.8253 1.8770 6.0762 24 6 0.4166 -0.1846 4.7620 25 6 1.1412 1.9215 3.6186 26 1 -0.3633 0.5872 -0.8434 27 1 -0.3633 -1.0240 -0.0868 28 1 -0.3633 0.4368 0.9302 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9622 0.0283 -2.9103 32 1 2.0288 4.0631 0.5556 33 1 1.9534 3.8735 2.3239 34 1 3.3541 3.2487 1.4207 35 1 3.7628 0.6628 1.7885 36 1 3.7261 2.0954 2.8357 37 1 2.2111 -1.3851 3.3451 38 1 3.8488 -1.5193 2.6609 39 1 3.5732 -1.8674 4.3845 40 1 3.2769 1.5217 5.5668 41 1 2.7818 -0.1439 5.8528 42 1 -0.2226 2.1440 5.9396 43 1 0.9335 1.2827 6.9835 44 1 1.4231 2.7843 6.1628 45 1 0.6956 -0.7633 3.8816 46 1 0.5441 -0.7970 5.6547 47 1 -0.6255 0.1240 4.6789 48 1 1.6040 2.8969 3.7895 49 1 0.0764 2.0709 3.4213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708746874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:33 Heat of formation + Delta-G solvation = -25.427085 kcal Electronic energy + Delta-G solvation = -23525.936318 eV Core-core repulsion = 20679.796227 eV Total energy + Delta-G solvation = -2846.140092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18855 -38.28364 -34.76211 -34.62260 -33.20239 -30.83261 -28.64109 -28.37775 -27.33333 -26.88224 -26.52522 -24.17497 -22.64941 -21.45362 -20.04100 -18.83945 -18.23477 -17.06737 -16.45112 -16.09244 -15.42291 -15.24465 -15.06956 -14.90833 -14.51519 -14.34800 -14.14107 -13.72519 -13.47096 -13.31565 -13.28757 -13.03281 -12.83278 -12.79776 -12.62730 -12.55128 -12.32084 -12.18051 -12.06977 -11.99870 -11.80423 -11.70185 -11.44502 -11.31102 -11.24133 -11.03515 -10.84018 -10.63372 -10.41605 -10.20313 -8.74837 -7.96236 -6.13395 1.35620 1.39002 1.45671 2.42200 3.20890 3.51780 3.81426 3.96819 4.07186 4.28576 4.36028 4.40623 4.47657 4.55219 4.67808 4.71077 4.75443 4.78608 4.82541 4.90759 4.91962 4.97364 4.98781 5.00525 5.06143 5.14179 5.16047 5.17791 5.21595 5.25861 5.29492 5.33053 5.39461 5.40911 5.43380 5.52224 5.57548 5.64819 5.70506 5.72455 5.74235 5.86752 5.92178 6.12790 6.32852 6.50750 6.83196 7.05486 7.52830 8.98562 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.007417 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.126829 B = 3774.101422 C = 4126.952069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C 0.220 3.780 4 H -0.004 1.004 5 C -0.538 4.538 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.933 3.067 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.539 5.539 14 C 0.035 3.965 15 C 0.097 3.903 16 H 0.078 0.922 17 C -0.156 4.156 18 C -0.080 4.080 19 H 0.046 0.954 20 C -0.142 4.142 21 C -0.091 4.091 22 C -0.054 4.054 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.092 4.092 26 H 0.031 0.969 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.257 0.743 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -0.462 15.239 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.014 0.986 5 C -0.576 4.576 6 H 0.092 0.908 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.760 3.240 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.261 5.261 14 C -0.114 4.114 15 C -0.011 4.011 16 H 0.096 0.904 17 C -0.194 4.194 18 C -0.099 4.099 19 H 0.065 0.935 20 C -0.199 4.199 21 C -0.128 4.128 22 C -0.055 4.055 23 C -0.195 4.195 24 C -0.197 4.197 25 C -0.130 4.130 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.564 -0.423 15.012 15.697 hybrid contribution 2.190 -0.062 -0.880 2.362 sum -2.374 -0.485 14.132 14.338 Atomic orbital electron populations 1.21622 0.96514 0.99634 1.00839 1.21529 0.94237 0.98429 1.00385 1.18998 0.91690 0.90826 0.87181 0.98604 1.22306 0.93936 1.37841 1.03562 0.90832 1.25561 1.01016 0.95721 0.95655 1.70033 1.36089 1.41002 1.08289 0.85936 0.82738 0.78336 0.76945 1.20481 1.21442 1.19697 1.62750 1.55992 1.04119 1.03234 1.22210 0.97075 0.91982 1.00106 1.21493 0.93544 0.96689 0.89377 0.90373 1.22570 0.99075 0.98908 0.98882 1.20759 0.98902 0.95208 0.95053 0.93509 1.21877 1.01784 0.95690 1.00595 1.21207 0.94266 1.01123 0.96204 1.20326 0.94747 0.95634 0.94746 1.22211 1.01000 0.99353 0.96958 1.22007 0.98981 0.97046 1.01701 1.21507 1.00208 0.98067 0.93206 0.94955 0.93610 0.92394 0.92894 0.93834 0.93328 0.94095 0.91376 0.95855 0.90287 0.94239 0.92347 0.94814 0.91581 0.92801 0.91275 0.92431 0.91809 0.93100 0.93384 0.91726 0.92513 0.92891 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.49 71.98 0.68 -4.41 16 2 C -0.11 -5.00 4.71 30.60 0.14 -4.86 16 3 C 0.22 10.82 1.99 44.17 0.09 10.91 16 4 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 5 C -0.54 -27.99 5.41 25.60 0.14 -27.85 16 6 H 0.07 3.78 3.94 -2.91 -0.01 3.76 16 7 C 0.02 1.07 5.31 84.66 0.45 1.52 16 8 N -0.91 -52.31 11.52 21.45 0.25 -52.07 16 9 Si 0.93 43.49 29.54 68.60 2.03 45.52 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.54 -22.25 4.37 -876.71 -3.84 -26.08 16 14 C 0.03 1.37 8.32 127.69 1.06 2.43 16 15 C 0.10 3.44 1.23 44.67 0.05 3.50 16 16 H 0.08 2.93 3.06 -2.56 -0.01 2.92 16 17 C -0.16 -5.73 2.95 30.26 0.09 -5.64 16 18 C -0.08 -2.38 2.60 -11.59 -0.03 -2.41 16 19 H 0.05 1.39 8.29 -1.23 -0.01 1.38 16 20 C -0.14 -4.13 8.91 71.93 0.64 -3.49 16 21 C -0.09 -2.18 4.12 29.73 0.12 -2.06 16 22 C -0.05 -1.27 0.71 -52.22 -0.04 -1.30 16 23 C -0.14 -2.64 8.08 72.46 0.59 -2.05 16 24 C -0.14 -3.11 8.00 72.02 0.58 -2.53 16 25 C -0.09 -2.67 3.67 30.32 0.11 -2.55 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 2.14 6.99 -2.39 -0.02 2.13 16 29 H 0.05 2.82 6.25 -2.39 -0.01 2.81 16 30 H 0.04 1.97 5.88 -2.39 -0.01 1.95 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.28 6.10 -2.39 -0.01 2.27 16 34 H 0.02 0.98 4.59 -2.39 -0.01 0.97 16 35 H 0.08 3.53 4.59 -2.21 -0.01 3.52 16 36 H 0.04 1.49 6.30 -2.22 -0.01 1.48 16 37 H 0.06 1.68 4.92 -2.38 -0.01 1.67 16 38 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.26 7.94 -1.72 -0.01 1.24 16 41 H 0.07 1.44 7.94 -1.74 -0.01 1.43 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 45 H 0.05 1.21 4.62 -2.39 -0.01 1.20 16 46 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.55 6.29 -2.23 -0.01 1.54 16 49 H 0.06 1.72 8.13 -2.22 -0.02 1.70 16 Total: -1.00 -56.30 335.76 4.05 -52.26 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.93 Total: 21.17 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 4.68 Total: -40.80 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -3.59 Total: -78.15 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -56.30 4.05 -52.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.830 kcal (2) G-P(sol) polarization free energy of solvation -56.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds