Wall clock time and date at job start Mon Mar 30 2020 08:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46675 * 2 1 4 4 C 1.52998 * 109.47409 * 239.99789 * 2 1 3 5 5 C 1.52997 * 109.47310 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47274 * 300.00517 * 5 4 2 7 7 N 1.46900 * 109.47351 * 179.97438 * 5 4 2 8 8 C 1.46900 * 111.00354 * 183.95647 * 7 5 4 9 9 C 1.46904 * 110.99822 * 60.00452 * 7 5 4 10 10 C 1.52994 * 109.47264 * 189.99986 * 9 7 5 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00108 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99667 * 16 14 12 20 20 C 1.53002 * 109.46922 * 60.00070 * 5 4 2 21 21 C 1.53003 * 109.47393 * 300.00062 * 20 5 4 22 22 C 1.52992 * 109.46747 * 299.99967 * 21 20 5 23 23 C 1.52994 * 109.47027 * 179.97438 * 21 20 5 24 24 C 1.53000 * 109.46901 * 59.99780 * 21 20 5 25 25 H 1.09008 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47410 * 299.99979 * 1 2 3 27 27 H 1.08996 * 109.47466 * 60.00624 * 1 2 3 28 28 H 1.09007 * 109.46831 * 60.00016 * 4 2 1 29 29 H 1.08995 * 109.47027 * 299.99978 * 4 2 1 30 30 H 1.09002 * 109.46926 * 296.05212 * 8 7 5 31 31 H 1.08998 * 109.46864 * 56.04609 * 8 7 5 32 32 H 1.08997 * 109.47540 * 176.04889 * 8 7 5 33 33 H 1.08998 * 109.47046 * 69.99663 * 9 7 5 34 34 H 1.09001 * 109.47014 * 309.99864 * 9 7 5 35 35 H 1.08998 * 109.47353 * 59.99865 * 10 9 7 36 36 H 1.09006 * 109.47395 * 300.00120 * 10 9 7 37 37 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 38 38 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 39 39 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.46781 * 60.00145 * 20 5 4 41 41 H 1.08999 * 109.47389 * 179.97438 * 20 5 4 42 42 H 1.09003 * 109.46921 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47434 * 299.99598 * 22 21 20 44 44 H 1.08997 * 109.47764 * 59.99921 * 22 21 20 45 45 H 1.08995 * 109.47366 * 299.99791 * 23 21 20 46 46 H 1.09004 * 109.46981 * 60.00509 * 23 21 20 47 47 H 1.09008 * 109.47080 * 180.02562 * 23 21 20 48 48 H 1.08994 * 109.47073 * 180.02562 * 24 21 20 49 49 H 1.09001 * 109.47156 * 59.99989 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 1 3.9330 0.3071 -1.2496 7 7 4.0597 -1.4138 -2.4485 8 6 5.5252 -1.5153 -2.4364 9 6 3.5883 -0.7485 -3.6705 10 6 3.9024 -1.6270 -4.8831 11 6 3.4120 -0.9338 -6.1559 12 6 3.7209 -1.7995 -7.3501 13 1 4.2213 -2.7469 -7.2154 14 6 3.3692 -1.3794 -8.6155 15 7 2.7593 -0.2258 -8.7795 16 14 3.7589 -2.4489 -10.0966 17 1 4.4437 -3.6872 -9.6465 18 1 2.4980 -2.8058 -10.7949 19 1 4.6455 -1.7033 -11.0258 20 6 4.0805 -1.4416 -0.0002 21 6 3.5704 -0.7203 1.2491 22 6 4.0799 0.7223 1.2487 23 6 4.0804 -1.4416 2.4983 24 6 2.0404 -0.7209 1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2491 30 1 5.9590 -0.5163 -2.4800 31 1 5.8473 -2.0116 -1.5210 32 1 5.8566 -2.0933 -3.2990 33 1 4.0912 0.2126 -3.7781 34 1 2.5118 -0.5901 -3.6058 35 1 3.3996 -2.5880 -4.7756 36 1 4.9789 -1.7855 -4.9479 37 1 3.9152 0.0271 -6.2632 38 1 2.3356 -0.7750 -6.0914 39 1 2.5116 0.0695 -9.6696 40 1 3.7175 -2.4694 0.0000 41 1 5.1705 -1.4416 -0.0005 42 1 3.7162 1.2363 2.1385 43 1 5.1700 0.7227 1.2486 44 1 3.7163 1.2359 0.3588 45 1 3.7171 -2.4692 2.4983 46 1 5.1704 -1.4415 2.4983 47 1 3.7166 -0.9280 3.3883 48 1 1.6771 -0.2067 2.1390 49 1 1.6774 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708747847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:51 Heat of formation + Delta-G solvation = -39.510358 kcal Electronic energy + Delta-G solvation = -21550.425957 eV Core-core repulsion = 18703.675169 eV Total energy + Delta-G solvation = -2846.750788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16005 -36.94787 -34.14445 -33.66835 -31.65058 -29.82902 -27.66497 -27.49055 -26.72537 -25.85352 -24.81484 -22.55362 -20.50906 -20.24444 -19.73645 -18.57062 -16.25787 -15.88996 -15.27068 -14.84515 -14.76673 -14.45728 -14.23739 -14.13076 -13.54539 -13.38331 -12.88801 -12.70668 -12.65488 -12.29857 -12.23206 -12.08421 -11.91532 -11.70532 -11.57821 -11.27693 -11.10027 -11.09395 -10.89323 -10.84835 -10.71588 -10.52012 -10.40815 -10.31361 -10.09054 -9.86178 -9.50015 -9.25262 -8.98692 -8.30480 -7.93569 -5.95787 -3.97392 3.33769 3.41008 3.45816 4.10761 4.50275 4.50736 4.56418 4.76422 4.92516 5.09157 5.15884 5.26846 5.31164 5.40048 5.41944 5.44860 5.48087 5.55124 5.62009 5.65201 5.68041 5.72377 5.77504 5.78656 5.87199 5.90736 5.93951 5.95546 6.05233 6.06262 6.15033 6.18047 6.21683 6.26491 6.32186 6.34124 6.46269 6.55516 6.78023 6.88399 7.19874 7.48631 7.51558 7.74089 7.89560 8.05429 8.49270 9.10197 9.66358 11.15752 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003534 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.739451 B = 7920.633518 C = 8451.686948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.109 4.109 5 C 0.084 3.916 6 H 0.038 0.962 7 N -0.539 5.539 8 C 0.021 3.979 9 C 0.053 3.947 10 C -0.104 4.104 11 C 0.021 3.979 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.101 4.101 21 C -0.064 4.064 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.101 4.101 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.012 0.988 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 0.623 23.058 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.024 4.024 6 H 0.056 0.944 7 N -0.263 5.263 8 C -0.127 4.127 9 C -0.074 4.074 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.139 4.139 21 C -0.065 4.065 22 C -0.202 4.202 23 C -0.197 4.197 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.094 0.254 22.924 22.926 hybrid contribution 0.549 0.370 -0.981 1.184 sum 0.643 0.625 21.943 21.961 Atomic orbital electron populations 1.21812 0.95266 1.01824 1.01468 1.21166 0.95342 0.99709 0.94920 0.91229 1.21702 0.94319 1.01438 0.97223 1.21629 0.95193 0.95460 0.90098 0.94442 1.62091 1.09853 1.52374 1.01944 1.22442 0.88006 0.99823 1.02424 1.22366 1.00142 0.95642 0.89293 1.21638 1.00082 0.98662 0.93805 1.19076 0.96378 0.95591 0.90568 1.21302 1.37801 1.04795 0.91547 0.92652 1.25035 0.95335 0.95142 0.99068 1.69981 1.41099 1.20262 1.22317 0.86550 0.78020 0.80651 0.82880 1.19725 1.21035 1.21090 1.21701 1.00100 0.99651 0.92467 1.20530 0.95403 0.95501 0.95048 1.21982 1.00662 0.95791 1.01798 1.21844 1.00810 1.00171 0.96847 1.21648 0.94163 1.00679 0.97349 0.92681 0.93026 0.92564 0.91487 0.91124 0.96260 0.91817 0.90848 0.95665 0.90900 0.92700 0.93566 0.96937 0.96654 0.93147 0.91196 0.91972 0.92985 0.92985 0.92014 0.92679 0.92812 0.92876 0.92334 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 2 C -0.09 -0.94 2.45 -90.62 -0.22 -1.16 16 3 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 4 C -0.11 -1.36 4.28 -26.73 -0.11 -1.47 16 5 C 0.08 1.09 1.67 -67.71 -0.11 0.98 16 6 H 0.04 0.51 6.43 -51.93 -0.33 0.18 16 7 N -0.54 -8.35 4.63 -234.89 -1.09 -9.44 16 8 C 0.02 0.30 8.95 60.06 0.54 0.84 16 9 C 0.05 0.95 4.77 -3.82 -0.02 0.94 16 10 C -0.10 -2.24 5.08 -26.73 -0.14 -2.37 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 16 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.10 -1.11 3.66 -26.73 -0.10 -1.21 16 21 C -0.06 -0.59 0.77 -154.51 -0.12 -0.71 16 22 C -0.15 -1.31 7.78 37.15 0.29 -1.02 16 23 C -0.14 -1.12 8.47 37.15 0.31 -0.81 16 24 C -0.10 -0.92 4.01 -26.73 -0.11 -1.03 16 25 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.92 6.20 -51.92 -0.32 0.60 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 32 H 0.07 1.11 6.47 -51.93 -0.34 0.78 16 33 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.07 1.32 5.83 -51.93 -0.30 1.02 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.98 6.55 -51.93 -0.34 0.64 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.68 6.26 -51.93 -0.32 0.35 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -29.87 358.82 -9.54 -39.41 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -9.58 Total: -4.27 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 0.01 Total: -21.43 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.35 Total: -36.14 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.87 -9.54 -39.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708747847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.096 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds