Wall clock time and date at job start Mon Mar 30 2020 08:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46675 * 2 1 4 4 C 1.52998 * 109.47409 * 239.99789 * 2 1 3 5 5 C 1.52997 * 109.47310 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47274 * 300.00517 * 5 4 2 7 7 N 1.46900 * 109.47351 * 179.97438 * 5 4 2 8 8 C 1.46900 * 111.00354 * 183.95647 * 7 5 4 9 9 C 1.46904 * 110.99822 * 60.00452 * 7 5 4 10 10 C 1.52994 * 109.47264 * 189.99986 * 9 7 5 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00108 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99667 * 16 14 12 20 20 C 1.53002 * 109.46922 * 60.00070 * 5 4 2 21 21 C 1.53003 * 109.47393 * 300.00062 * 20 5 4 22 22 C 1.52992 * 109.46747 * 299.99967 * 21 20 5 23 23 C 1.52994 * 109.47027 * 179.97438 * 21 20 5 24 24 C 1.53000 * 109.46901 * 59.99780 * 21 20 5 25 25 H 1.09008 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47410 * 299.99979 * 1 2 3 27 27 H 1.08996 * 109.47466 * 60.00624 * 1 2 3 28 28 H 1.09007 * 109.46831 * 60.00016 * 4 2 1 29 29 H 1.08995 * 109.47027 * 299.99978 * 4 2 1 30 30 H 1.09002 * 109.46926 * 296.05212 * 8 7 5 31 31 H 1.08998 * 109.46864 * 56.04609 * 8 7 5 32 32 H 1.08997 * 109.47540 * 176.04889 * 8 7 5 33 33 H 1.08998 * 109.47046 * 69.99663 * 9 7 5 34 34 H 1.09001 * 109.47014 * 309.99864 * 9 7 5 35 35 H 1.08998 * 109.47353 * 59.99865 * 10 9 7 36 36 H 1.09006 * 109.47395 * 300.00120 * 10 9 7 37 37 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 38 38 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 39 39 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.46781 * 60.00145 * 20 5 4 41 41 H 1.08999 * 109.47389 * 179.97438 * 20 5 4 42 42 H 1.09003 * 109.46921 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47434 * 299.99598 * 22 21 20 44 44 H 1.08997 * 109.47764 * 59.99921 * 22 21 20 45 45 H 1.08995 * 109.47366 * 299.99791 * 23 21 20 46 46 H 1.09004 * 109.46981 * 60.00509 * 23 21 20 47 47 H 1.09008 * 109.47080 * 180.02562 * 23 21 20 48 48 H 1.08994 * 109.47073 * 180.02562 * 24 21 20 49 49 H 1.09001 * 109.47156 * 59.99989 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 1 3.9330 0.3071 -1.2496 7 7 4.0597 -1.4138 -2.4485 8 6 5.5252 -1.5153 -2.4364 9 6 3.5883 -0.7485 -3.6705 10 6 3.9024 -1.6270 -4.8831 11 6 3.4120 -0.9338 -6.1559 12 6 3.7209 -1.7995 -7.3501 13 1 4.2213 -2.7469 -7.2154 14 6 3.3692 -1.3794 -8.6155 15 7 2.7593 -0.2258 -8.7795 16 14 3.7589 -2.4489 -10.0966 17 1 4.4437 -3.6872 -9.6465 18 1 2.4980 -2.8058 -10.7949 19 1 4.6455 -1.7033 -11.0258 20 6 4.0805 -1.4416 -0.0002 21 6 3.5704 -0.7203 1.2491 22 6 4.0799 0.7223 1.2487 23 6 4.0804 -1.4416 2.4983 24 6 2.0404 -0.7209 1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2491 30 1 5.9590 -0.5163 -2.4800 31 1 5.8473 -2.0116 -1.5210 32 1 5.8566 -2.0933 -3.2990 33 1 4.0912 0.2126 -3.7781 34 1 2.5118 -0.5901 -3.6058 35 1 3.3996 -2.5880 -4.7756 36 1 4.9789 -1.7855 -4.9479 37 1 3.9152 0.0271 -6.2632 38 1 2.3356 -0.7750 -6.0914 39 1 2.5116 0.0695 -9.6696 40 1 3.7175 -2.4694 0.0000 41 1 5.1705 -1.4416 -0.0005 42 1 3.7162 1.2363 2.1385 43 1 5.1700 0.7227 1.2486 44 1 3.7163 1.2359 0.3588 45 1 3.7171 -2.4692 2.4983 46 1 5.1704 -1.4415 2.4983 47 1 3.7166 -0.9280 3.3883 48 1 1.6771 -0.2067 2.1390 49 1 1.6774 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708747847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:50 Heat of formation + Delta-G solvation = -55.095890 kcal Electronic energy + Delta-G solvation = -21551.101796 eV Core-core repulsion = 18703.675169 eV Total energy + Delta-G solvation = -2847.426628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.09216 -38.18731 -35.66795 -34.94543 -33.49302 -31.06383 -29.11562 -28.18311 -27.47146 -27.26044 -26.08554 -24.28298 -21.84641 -21.34315 -21.09699 -19.40447 -18.46509 -17.04103 -16.55932 -16.19526 -15.93361 -15.81676 -15.47491 -15.19835 -14.61922 -14.39172 -14.28186 -14.07234 -13.64436 -13.51272 -13.45135 -13.15180 -13.04722 -12.84185 -12.70262 -12.67287 -12.50442 -12.43126 -12.13750 -12.10302 -11.96764 -11.75003 -11.62322 -11.42329 -11.38169 -11.20953 -11.06057 -10.89315 -10.69816 -10.56221 -9.21260 -8.20867 -6.31993 1.39288 1.39741 1.53574 2.40412 2.93760 3.12043 3.69824 3.70692 3.92859 4.08585 4.13989 4.19682 4.29652 4.34999 4.39066 4.46430 4.55221 4.59886 4.63408 4.70693 4.73896 4.76922 4.83224 4.88489 4.93316 4.95839 5.00881 5.03811 5.05830 5.08820 5.13480 5.17598 5.21554 5.22633 5.28294 5.30391 5.35647 5.47052 5.49002 5.52500 5.55850 5.68356 5.73376 5.84888 6.12924 6.25773 6.29937 6.84743 7.37206 8.91382 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003534 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.739451 B = 7920.633518 C = 8451.686948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.107 4.107 5 C 0.085 3.915 6 H 0.034 0.966 7 N -0.545 5.545 8 C 0.021 3.979 9 C 0.065 3.935 10 C -0.088 4.088 11 C 0.026 3.974 12 C -0.542 4.542 13 H 0.058 0.942 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.095 4.095 21 C -0.061 4.061 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.097 4.097 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.049 0.951 37 H -0.012 1.012 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.898 -0.209 24.505 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.145 4.145 5 C -0.022 4.022 6 H 0.052 0.948 7 N -0.269 5.269 8 C -0.127 4.127 9 C -0.062 4.062 10 C -0.126 4.126 11 C -0.011 4.011 12 C -0.580 4.580 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.133 4.133 21 C -0.062 4.062 22 C -0.201 4.201 23 C -0.193 4.193 24 C -0.135 4.135 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.647 -0.582 24.392 24.408 hybrid contribution 0.365 0.663 -1.418 1.607 sum 1.012 0.081 22.974 22.997 Atomic orbital electron populations 1.21801 0.94674 1.01934 1.01827 1.21129 0.95824 0.99453 0.94275 0.91254 1.21675 0.94102 1.00929 0.97781 1.21712 0.95419 0.95310 0.89802 0.94829 1.62062 1.10828 1.52327 1.01657 1.22480 0.87070 0.99964 1.03161 1.22068 1.00004 0.94613 0.89549 1.21381 0.99843 0.98339 0.93013 1.18967 0.94604 0.94761 0.92786 1.21708 1.38199 1.05286 0.92775 0.92328 1.26010 0.94867 0.96553 1.02505 1.70110 1.41865 1.22042 1.23411 0.85372 0.78118 0.78892 0.78512 1.18613 1.20231 1.20251 1.21662 1.00252 0.99215 0.92169 1.20518 0.95413 0.95565 0.94690 1.21967 1.00766 0.95565 1.01814 1.21810 1.00999 1.00148 0.96388 1.21629 0.94091 1.00608 0.97135 0.92701 0.91419 0.93469 0.93504 0.92013 0.96177 0.89395 0.92010 0.96441 0.91248 0.93120 0.93244 0.99348 0.99082 0.92752 0.91760 0.91584 0.91738 0.92845 0.93221 0.92579 0.92531 0.91758 0.90795 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.19 71.98 0.66 -1.92 16 2 C -0.09 -1.70 2.45 -10.80 -0.03 -1.72 16 3 H 0.07 1.36 6.43 -2.39 -0.02 1.34 16 4 C -0.11 -2.67 4.28 30.59 0.13 -2.54 16 5 C 0.09 2.16 1.67 44.92 0.08 2.24 16 6 H 0.03 0.90 6.43 -2.39 -0.02 0.88 16 7 N -0.54 -16.80 4.63 -897.05 -4.15 -20.96 16 8 C 0.02 0.58 8.95 127.69 1.14 1.73 16 9 C 0.07 2.44 4.77 86.30 0.41 2.85 16 10 C -0.09 -3.88 5.08 30.59 0.16 -3.72 16 11 C 0.03 1.46 4.97 29.85 0.15 1.61 16 12 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 13 H 0.06 3.34 7.74 -2.92 -0.02 3.32 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 15 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 16 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 17 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 C -0.10 -1.94 3.66 30.60 0.11 -1.83 16 21 C -0.06 -0.99 0.77 -52.18 -0.04 -1.03 16 22 C -0.14 -2.30 7.78 71.98 0.56 -1.74 16 23 C -0.14 -1.81 8.47 71.98 0.61 -1.20 16 24 C -0.10 -1.57 4.01 30.59 0.12 -1.45 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 1.34 6.20 -2.38 -0.01 1.32 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 1.99 6.01 -2.39 -0.01 1.98 16 32 H 0.06 1.84 6.47 -2.39 -0.02 1.83 16 33 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 34 H 0.07 2.62 5.83 -2.39 -0.01 2.61 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.05 2.13 6.55 -2.38 -0.02 2.11 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.29 6.26 -2.39 -0.01 1.28 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.05 0.92 4.81 -2.39 -0.01 0.90 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -64.32 358.82 3.78 -60.53 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.87 Total: 11.13 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 4.76 Total: -40.15 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.87 Total: -78.82 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -64.32 3.78 -60.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708747847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.436 kcal (2) G-P(sol) polarization free energy of solvation -64.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds