Wall clock time and date at job start Mon Mar 30 2020 08:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52848 * 1 3 3 H 1.11143 * 106.60656 * 2 1 4 4 C 1.52215 * 110.60073 * 244.03177 * 2 1 3 5 5 C 1.52772 * 110.70462 * 285.46899 * 4 2 1 6 6 H 1.08666 * 110.34409 * 60.40253 * 5 4 2 7 7 N 1.47259 * 109.11599 * 179.97438 * 5 4 2 8 8 C 1.46904 * 110.99828 * 57.78981 * 7 5 4 9 9 C 1.46903 * 111.00014 * 293.83804 * 7 5 4 10 10 C 1.53001 * 109.47151 * 189.99654 * 9 7 5 11 11 C 1.53000 * 109.47251 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47186 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00099 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99850 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00073 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99919 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47367 * 60.00007 * 16 14 12 18 18 H 1.48503 * 109.47394 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47034 * 300.00018 * 16 14 12 20 20 C 1.52707 * 108.85208 * 298.96327 * 5 4 2 21 21 C 1.52466 * 110.79877 * 61.75806 * 20 5 4 22 22 C 1.54410 * 107.72155 * 188.47759 * 21 20 5 23 23 C 1.53116 * 110.03250 * 71.69099 * 21 20 5 24 24 C 1.51510 * 111.70349 * 117.00724 * 2 1 3 25 25 H 1.09003 * 109.46655 * 296.66293 * 1 2 3 26 26 H 1.08993 * 109.47531 * 56.66024 * 1 2 3 27 27 H 1.09002 * 109.46953 * 176.66475 * 1 2 3 28 28 H 1.09308 * 109.58844 * 164.95219 * 4 2 1 29 29 H 1.09330 * 109.55572 * 45.94546 * 4 2 1 30 30 H 1.09001 * 109.46813 * 60.00384 * 8 7 5 31 31 H 1.09002 * 109.47159 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47240 * 300.00488 * 8 7 5 33 33 H 1.09001 * 109.47216 * 309.99994 * 9 7 5 34 34 H 1.08996 * 109.47026 * 69.99669 * 9 7 5 35 35 H 1.09001 * 109.47338 * 300.00266 * 10 9 7 36 36 H 1.09005 * 109.47038 * 59.99832 * 10 9 7 37 37 H 1.09001 * 109.47181 * 300.00379 * 11 10 9 38 38 H 1.08996 * 109.46962 * 59.99993 * 11 10 9 39 39 H 0.97001 * 119.99373 * 180.02562 * 15 14 12 40 40 H 1.09304 * 109.26268 * 301.12379 * 20 5 4 41 41 H 1.09296 * 109.28762 * 182.41885 * 20 5 4 42 42 H 1.09005 * 109.47430 * 181.69590 * 22 21 20 43 43 H 1.08998 * 109.47181 * 301.69566 * 22 21 20 44 44 H 1.09003 * 109.47647 * 61.69534 * 22 21 20 45 45 H 1.08995 * 109.47740 * 301.13503 * 23 21 20 46 46 H 1.08998 * 109.47179 * 61.13994 * 23 21 20 47 47 H 1.09008 * 109.47201 * 181.13768 * 23 21 20 48 48 H 1.10230 * 108.78846 * 319.86886 * 24 2 1 49 49 H 1.10248 * 108.76553 * 204.83673 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5285 0.0000 0.0000 3 1 1.8461 1.0651 0.0000 4 6 2.0641 -0.6239 -1.2810 5 6 1.8973 -2.1422 -1.2530 6 1 0.8468 -2.4053 -1.1634 7 7 2.4249 -2.7085 -2.5058 8 6 3.8358 -2.3453 -2.6946 9 6 1.6144 -2.2872 -3.6563 10 6 2.0328 -3.0836 -4.8939 11 6 1.1883 -2.6452 -6.0921 12 6 1.6000 -3.4301 -7.3108 13 1 2.3852 -4.1681 -7.2381 14 6 0.9735 -3.2068 -8.5186 15 7 0.0170 -2.3085 -8.6070 16 14 1.4833 -4.1802 -10.0292 17 1 1.2736 -5.6287 -9.7788 18 1 0.6637 -3.7547 -11.1922 19 1 2.9184 -3.9304 -10.3179 20 6 2.6920 -2.7043 -0.0764 21 6 2.1643 -2.1558 1.2447 22 6 3.1411 -2.5919 2.3583 23 6 0.8009 -2.7759 1.5628 24 6 2.0888 -0.6392 1.2542 25 1 -0.3633 0.4612 0.9184 26 1 -0.3634 0.5648 -0.8585 27 1 -0.3633 -1.0259 -0.0598 28 1 3.1239 -0.3805 -1.3918 29 1 1.5223 -0.2186 -2.1397 30 1 4.4245 -2.7303 -1.8619 31 1 4.2001 -2.7759 -3.6273 32 1 3.9294 -1.2601 -2.7347 33 1 0.5609 -2.4706 -3.4453 34 1 1.7685 -1.2238 -3.8394 35 1 3.0864 -2.9001 -5.1050 36 1 1.8788 -4.1470 -4.7108 37 1 0.1349 -2.8290 -5.8807 38 1 1.3419 -1.5818 -6.2752 39 1 -0.4239 -2.1517 -9.4567 40 1 3.7445 -2.4313 -0.1888 41 1 2.6128 -3.7944 -0.0751 42 1 2.7739 -2.2393 3.3222 43 1 3.2134 -3.6794 2.3728 44 1 4.1253 -2.1648 2.1662 45 1 0.1021 -2.5499 0.7575 46 1 0.9068 -3.8564 1.6596 47 1 0.4232 -2.3626 2.4982 48 1 1.4787 -0.3237 2.1164 49 1 3.1001 -0.2391 1.4348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708747849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:56 Heat of formation + Delta-G solvation = -38.837712 kcal Electronic energy + Delta-G solvation = -21663.566756 eV Core-core repulsion = 18816.845135 eV Total energy + Delta-G solvation = -2846.721620 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16590 -36.97715 -34.13132 -33.62963 -31.67653 -29.50199 -27.75841 -27.13838 -26.72490 -26.20779 -25.25649 -22.59723 -21.03793 -20.25289 -19.51046 -17.89966 -16.26362 -15.95191 -15.13774 -14.93218 -14.59647 -14.42397 -14.31865 -14.03929 -13.72328 -13.59253 -13.14906 -12.87265 -12.45476 -12.28549 -12.16109 -12.00446 -11.91989 -11.53913 -11.46167 -11.37107 -11.15829 -11.06043 -10.86631 -10.79331 -10.67185 -10.53745 -10.46965 -10.31293 -10.06104 -10.00390 -9.51571 -9.24938 -9.00553 -8.29624 -7.86959 -5.95316 -3.97146 3.36578 3.40426 3.43396 4.15024 4.46934 4.50484 4.58934 4.72735 4.92660 4.99838 5.06621 5.16107 5.33491 5.39414 5.40386 5.45484 5.51519 5.52496 5.60393 5.62813 5.65504 5.69613 5.76405 5.81803 5.85750 5.92343 5.95094 5.97324 6.00689 6.04266 6.10344 6.17609 6.22180 6.29659 6.31206 6.42761 6.44106 6.48334 6.78870 6.87272 7.19839 7.48232 7.51372 7.73813 7.89799 8.05721 8.49403 9.10001 9.66514 11.16151 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.003479 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.930402 B = 8046.357158 C = 8388.832541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.056 0.944 4 C -0.147 4.147 5 C 0.088 3.912 6 H 0.082 0.918 7 N -0.537 5.537 8 C 0.017 3.983 9 C 0.056 3.944 10 C -0.105 4.105 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.098 4.098 21 C -0.056 4.056 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.096 4.096 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 3.305 22.530 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.186 4.186 5 C -0.021 4.021 6 H 0.100 0.900 7 N -0.259 5.259 8 C -0.132 4.132 9 C -0.071 4.071 10 C -0.143 4.143 11 C -0.015 4.015 12 C -0.556 4.556 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.136 4.136 21 C -0.057 4.057 22 C -0.202 4.202 23 C -0.200 4.200 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.070 2.871 22.434 22.980 hybrid contribution 0.292 0.514 -0.996 1.158 sum 4.362 3.385 21.438 22.138 Atomic orbital electron populations 1.21939 0.95225 1.02178 1.01291 1.20697 0.95712 0.99077 0.94379 0.92580 1.22120 1.01412 0.97681 0.97399 1.21603 0.99324 0.91348 0.89820 0.90008 1.62444 1.02519 1.58746 1.02229 1.22485 0.89953 0.98451 1.02268 1.22278 0.96934 0.97411 0.90493 1.21655 0.99906 0.99094 0.93620 1.19062 0.94884 0.96398 0.91181 1.21230 1.19314 1.21122 0.93966 0.92759 1.25026 0.95117 0.95396 0.98970 1.69961 1.24520 1.33589 1.25612 0.86665 0.78509 0.80484 0.82385 1.20220 1.21341 1.20290 1.21526 0.99214 1.00655 0.92213 1.20358 0.95632 0.94589 0.95098 1.22272 0.98750 1.01186 0.97957 1.22025 0.96447 1.00353 1.01188 1.21268 1.00864 0.94180 0.97081 0.93031 0.92733 0.92174 0.91873 0.91651 0.91983 0.90945 0.95697 0.91537 0.95296 0.93507 0.92720 0.96682 0.96923 0.93029 0.92059 0.91295 0.92996 0.92647 0.92959 0.92103 0.92709 0.93076 0.92453 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.90 37.08 0.33 -1.12 16 2 C -0.08 -0.80 2.60 -91.85 -0.24 -1.04 16 3 H 0.06 0.55 8.29 -50.69 -0.42 0.13 16 4 C -0.15 -1.76 3.96 -27.25 -0.11 -1.87 16 5 C 0.09 1.11 2.06 -67.78 -0.14 0.97 16 6 H 0.08 1.09 6.01 -52.12 -0.31 0.78 16 7 N -0.54 -8.21 4.75 -235.06 -1.12 -9.32 16 8 C 0.02 0.23 8.57 60.07 0.51 0.75 16 9 C 0.06 1.01 4.42 -3.82 -0.02 0.99 16 10 C -0.10 -2.25 5.08 -26.73 -0.14 -2.38 16 11 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 12 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 16 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.10 -1.07 3.58 -27.15 -0.10 -1.17 16 21 C -0.06 -0.51 0.71 -154.57 -0.11 -0.62 16 22 C -0.14 -1.16 8.09 37.90 0.31 -0.86 16 23 C -0.14 -1.27 8.04 37.22 0.30 -0.98 16 24 C -0.10 -0.87 4.13 -28.07 -0.12 -0.98 16 25 H 0.05 0.44 8.07 -51.93 -0.42 0.02 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 5.01 -51.93 -0.26 0.34 16 28 H 0.06 0.77 6.30 -51.75 -0.33 0.44 16 29 H 0.06 0.88 6.66 -51.74 -0.34 0.54 16 30 H 0.06 0.76 6.30 -51.93 -0.33 0.44 16 31 H 0.07 1.10 6.30 -51.93 -0.33 0.77 16 32 H 0.02 0.34 6.22 -51.93 -0.32 0.02 16 33 H 0.07 1.21 7.98 -51.93 -0.41 0.79 16 34 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 35 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.06 0.67 6.35 -51.76 -0.33 0.34 16 41 H 0.07 0.80 8.13 -51.76 -0.42 0.38 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.41 8.05 -51.93 -0.42 0.00 16 45 H 0.06 0.58 4.77 -51.93 -0.25 0.34 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.41 8.05 -51.92 -0.42 -0.01 16 48 H 0.06 0.48 7.86 -51.23 -0.40 0.08 16 49 H 0.05 0.48 7.91 -51.22 -0.41 0.07 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -29.73 353.26 -9.45 -39.18 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -9.31 Total: -3.80 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.38 Total: -36.05 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.73 -9.45 -39.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708747849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.337 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds