Wall clock time and date at job start Mon Mar 30 2020 08:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52848 * 1 3 3 H 1.11143 * 106.60656 * 2 1 4 4 C 1.52215 * 110.60073 * 244.03177 * 2 1 3 5 5 C 1.52772 * 110.70462 * 285.46899 * 4 2 1 6 6 H 1.08666 * 110.34409 * 60.40253 * 5 4 2 7 7 N 1.47259 * 109.11599 * 179.97438 * 5 4 2 8 8 C 1.46904 * 110.99828 * 57.78981 * 7 5 4 9 9 C 1.46903 * 111.00014 * 293.83804 * 7 5 4 10 10 C 1.53001 * 109.47151 * 189.99654 * 9 7 5 11 11 C 1.53000 * 109.47251 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47186 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00099 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99850 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00073 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99919 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47367 * 60.00007 * 16 14 12 18 18 H 1.48503 * 109.47394 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47034 * 300.00018 * 16 14 12 20 20 C 1.52707 * 108.85208 * 298.96327 * 5 4 2 21 21 C 1.52466 * 110.79877 * 61.75806 * 20 5 4 22 22 C 1.54410 * 107.72155 * 188.47759 * 21 20 5 23 23 C 1.53116 * 110.03250 * 71.69099 * 21 20 5 24 24 C 1.51510 * 111.70349 * 117.00724 * 2 1 3 25 25 H 1.09003 * 109.46655 * 296.66293 * 1 2 3 26 26 H 1.08993 * 109.47531 * 56.66024 * 1 2 3 27 27 H 1.09002 * 109.46953 * 176.66475 * 1 2 3 28 28 H 1.09308 * 109.58844 * 164.95219 * 4 2 1 29 29 H 1.09330 * 109.55572 * 45.94546 * 4 2 1 30 30 H 1.09001 * 109.46813 * 60.00384 * 8 7 5 31 31 H 1.09002 * 109.47159 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47240 * 300.00488 * 8 7 5 33 33 H 1.09001 * 109.47216 * 309.99994 * 9 7 5 34 34 H 1.08996 * 109.47026 * 69.99669 * 9 7 5 35 35 H 1.09001 * 109.47338 * 300.00266 * 10 9 7 36 36 H 1.09005 * 109.47038 * 59.99832 * 10 9 7 37 37 H 1.09001 * 109.47181 * 300.00379 * 11 10 9 38 38 H 1.08996 * 109.46962 * 59.99993 * 11 10 9 39 39 H 0.97001 * 119.99373 * 180.02562 * 15 14 12 40 40 H 1.09304 * 109.26268 * 301.12379 * 20 5 4 41 41 H 1.09296 * 109.28762 * 182.41885 * 20 5 4 42 42 H 1.09005 * 109.47430 * 181.69590 * 22 21 20 43 43 H 1.08998 * 109.47181 * 301.69566 * 22 21 20 44 44 H 1.09003 * 109.47647 * 61.69534 * 22 21 20 45 45 H 1.08995 * 109.47740 * 301.13503 * 23 21 20 46 46 H 1.08998 * 109.47179 * 61.13994 * 23 21 20 47 47 H 1.09008 * 109.47201 * 181.13768 * 23 21 20 48 48 H 1.10230 * 108.78846 * 319.86886 * 24 2 1 49 49 H 1.10248 * 108.76553 * 204.83673 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5285 0.0000 0.0000 3 1 1.8461 1.0651 0.0000 4 6 2.0641 -0.6239 -1.2810 5 6 1.8973 -2.1422 -1.2530 6 1 0.8468 -2.4053 -1.1634 7 7 2.4249 -2.7085 -2.5058 8 6 3.8358 -2.3453 -2.6946 9 6 1.6144 -2.2872 -3.6563 10 6 2.0328 -3.0836 -4.8939 11 6 1.1883 -2.6452 -6.0921 12 6 1.6000 -3.4301 -7.3108 13 1 2.3852 -4.1681 -7.2381 14 6 0.9735 -3.2068 -8.5186 15 7 0.0170 -2.3085 -8.6070 16 14 1.4833 -4.1802 -10.0292 17 1 1.2736 -5.6287 -9.7788 18 1 0.6637 -3.7547 -11.1922 19 1 2.9184 -3.9304 -10.3179 20 6 2.6920 -2.7043 -0.0764 21 6 2.1643 -2.1558 1.2447 22 6 3.1411 -2.5919 2.3583 23 6 0.8009 -2.7759 1.5628 24 6 2.0888 -0.6392 1.2542 25 1 -0.3633 0.4612 0.9184 26 1 -0.3634 0.5648 -0.8585 27 1 -0.3633 -1.0259 -0.0598 28 1 3.1239 -0.3805 -1.3918 29 1 1.5223 -0.2186 -2.1397 30 1 4.4245 -2.7303 -1.8619 31 1 4.2001 -2.7759 -3.6273 32 1 3.9294 -1.2601 -2.7347 33 1 0.5609 -2.4706 -3.4453 34 1 1.7685 -1.2238 -3.8394 35 1 3.0864 -2.9001 -5.1050 36 1 1.8788 -4.1470 -4.7108 37 1 0.1349 -2.8290 -5.8807 38 1 1.3419 -1.5818 -6.2752 39 1 -0.4239 -2.1517 -9.4567 40 1 3.7445 -2.4313 -0.1888 41 1 2.6128 -3.7944 -0.0751 42 1 2.7739 -2.2393 3.3222 43 1 3.2134 -3.6794 2.3728 44 1 4.1253 -2.1648 2.1662 45 1 0.1021 -2.5499 0.7575 46 1 0.9068 -3.8564 1.6596 47 1 0.4232 -2.3626 2.4982 48 1 1.4787 -0.3237 2.1164 49 1 3.1001 -0.2391 1.4348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708747849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:55 Heat of formation + Delta-G solvation = -54.542817 kcal Electronic energy + Delta-G solvation = -21664.247780 eV Core-core repulsion = 18816.845135 eV Total energy + Delta-G solvation = -2847.402645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.10530 -38.15683 -35.71882 -34.83915 -33.51187 -30.79989 -28.76294 -28.39079 -27.41036 -27.18317 -26.78652 -24.31827 -22.00566 -21.81102 -20.71287 -18.78257 -18.44883 -17.02496 -16.52560 -16.25754 -16.12851 -15.53284 -15.27076 -15.04562 -14.82996 -14.55886 -14.29392 -14.23724 -13.89271 -13.60566 -13.26965 -13.08463 -12.90687 -12.79394 -12.73408 -12.53569 -12.47321 -12.38693 -12.27832 -12.12142 -11.86943 -11.72007 -11.54100 -11.51334 -11.35472 -11.24861 -11.04567 -10.86534 -10.76476 -10.54682 -9.10623 -8.20243 -6.31599 1.39406 1.43020 1.50926 2.40815 2.99547 3.12542 3.66187 3.77355 3.87355 4.08746 4.14863 4.20723 4.23120 4.29846 4.32210 4.47187 4.54967 4.60402 4.63889 4.65849 4.72095 4.82714 4.85011 4.89015 4.91003 4.97867 5.00295 5.05795 5.06977 5.09478 5.12468 5.14834 5.20635 5.22356 5.27312 5.29272 5.40520 5.47597 5.51626 5.54467 5.57252 5.66904 5.74430 5.85418 6.14765 6.26536 6.30243 6.84912 7.37565 8.91596 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.003479 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.930402 B = 8046.357158 C = 8388.832541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 H 0.061 0.939 4 C -0.142 4.142 5 C 0.089 3.911 6 H 0.073 0.927 7 N -0.544 5.544 8 C 0.018 3.982 9 C 0.070 3.930 10 C -0.089 4.089 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.092 4.092 21 C -0.054 4.054 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.095 4.095 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.050 0.950 37 H -0.010 1.010 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.321 2.865 23.855 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.181 4.181 5 C -0.018 4.018 6 H 0.091 0.909 7 N -0.266 5.266 8 C -0.130 4.130 9 C -0.058 4.058 10 C -0.127 4.127 11 C -0.010 4.010 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.130 4.130 21 C -0.055 4.055 22 C -0.198 4.198 23 C -0.200 4.200 24 C -0.132 4.132 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.194 2.429 23.782 24.463 hybrid contribution -0.080 0.674 -1.386 1.543 sum 5.113 3.103 22.396 23.181 Atomic orbital electron populations 1.21934 0.95138 1.01849 1.01639 1.20688 0.95772 0.99289 0.93879 0.92066 1.22054 1.01144 0.97032 0.97848 1.21637 0.99107 0.91936 0.89169 0.90906 1.62397 1.02911 1.59240 1.02096 1.22504 0.89249 0.98706 1.02541 1.21960 0.97028 0.96380 0.90406 1.21403 0.99029 0.99059 0.93210 1.18955 0.94290 0.94798 0.93005 1.21665 1.19718 1.21644 0.95194 0.92301 1.26004 0.94905 0.96398 1.02566 1.70098 1.25586 1.35056 1.26693 0.85486 0.78545 0.79063 0.77879 1.19126 1.20702 1.19118 1.21484 0.99027 1.00170 0.92279 1.20337 0.96023 0.94718 0.94392 1.22232 0.98490 1.01240 0.97844 1.22023 0.96129 1.00424 1.01405 1.21247 1.01427 0.93863 0.96685 0.91463 0.93787 0.92694 0.91877 0.93784 0.89765 0.92272 0.95361 0.92152 0.95836 0.93146 0.93166 0.99160 0.99314 0.92745 0.91763 0.91976 0.91918 0.92654 0.92681 0.93156 0.92777 0.91838 0.91136 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.90 71.93 0.64 -2.12 16 2 C -0.08 -1.44 2.60 -11.59 -0.03 -1.47 16 3 H 0.06 1.10 8.29 -1.23 -0.01 1.09 16 4 C -0.14 -3.32 3.96 30.26 0.12 -3.20 16 5 C 0.09 2.22 2.06 44.67 0.09 2.31 16 6 H 0.07 1.95 6.01 -2.56 -0.02 1.94 16 7 N -0.54 -16.51 4.75 -897.60 -4.26 -20.78 16 8 C 0.02 0.49 8.57 127.69 1.09 1.58 16 9 C 0.07 2.58 4.42 86.30 0.38 2.97 16 10 C -0.09 -3.91 5.08 30.59 0.16 -3.75 16 11 C 0.03 1.50 4.97 29.85 0.15 1.64 16 12 C -0.54 -32.13 9.11 25.60 0.23 -31.89 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 15 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16 16 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 C -0.09 -1.86 3.58 30.32 0.11 -1.75 16 21 C -0.05 -0.87 0.71 -52.22 -0.04 -0.91 16 22 C -0.14 -1.88 8.09 72.46 0.59 -1.30 16 23 C -0.14 -2.28 8.04 72.02 0.58 -1.71 16 24 C -0.09 -1.47 4.13 29.73 0.12 -1.35 16 25 H 0.07 1.03 8.07 -2.39 -0.02 1.01 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 1.08 5.01 -2.39 -0.01 1.06 16 28 H 0.06 1.47 6.30 -2.22 -0.01 1.46 16 29 H 0.04 1.21 6.66 -2.21 -0.01 1.19 16 30 H 0.08 1.92 6.30 -2.39 -0.02 1.90 16 31 H 0.06 1.76 6.30 -2.39 -0.02 1.75 16 32 H 0.03 0.75 6.22 -2.39 -0.01 0.73 16 33 H 0.06 2.27 7.98 -2.39 -0.02 2.25 16 34 H 0.02 0.89 6.91 -2.39 -0.02 0.87 16 35 H 0.05 2.16 6.47 -2.39 -0.02 2.14 16 36 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.06 1.26 6.35 -2.23 -0.01 1.25 16 41 H 0.06 1.35 8.13 -2.23 -0.02 1.34 16 42 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.71 8.05 -2.39 -0.02 0.70 16 45 H 0.05 0.91 4.77 -2.39 -0.01 0.90 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.86 8.05 -2.38 -0.02 0.84 16 48 H 0.07 0.95 7.86 -1.73 -0.01 0.94 16 49 H 0.06 0.89 7.91 -1.72 -0.01 0.87 16 Total: -1.00 -63.98 353.26 3.61 -60.37 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.90 Total: 11.62 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 4.66 Total: -40.54 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -3.98 Total: -78.70 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -63.98 3.61 -60.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708747849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.830 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds