Wall clock time and date at job start Mon Mar 30 2020 07:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 108.76635 * 2 1 4 4 C 1.54062 * 108.87515 * 118.51288 * 2 1 3 5 5 C 1.54065 * 112.81574 * 162.49306 * 4 2 1 6 6 C 1.50477 * 112.49746 * 41.71670 * 5 4 2 7 7 C 1.54246 * 108.52338 * 265.85066 * 6 5 4 8 8 C 1.45540 * 112.40448 * 79.98375 * 7 6 5 9 9 C 1.50477 * 108.87357 * 241.48737 * 2 1 3 10 10 H 1.08991 * 109.78877 * 264.87491 * 9 2 1 11 11 N 1.46904 * 109.63010 * 25.36360 * 9 2 1 12 12 C 1.46900 * 111.00013 * 71.42814 * 11 9 2 13 13 C 1.46894 * 110.99953 * 195.38936 * 11 9 2 14 14 C 1.52994 * 109.47102 * 170.00115 * 13 11 9 15 15 C 1.53002 * 109.47248 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47235 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47203 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99472 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00285 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00206 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99854 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47066 * 89.99390 * 21 19 17 23 23 H 1.48502 * 109.47177 * 209.99922 * 21 19 17 24 24 H 1.48503 * 109.47093 * 329.99776 * 21 19 17 25 25 H 1.09005 * 109.47272 * 179.81027 * 1 2 3 26 26 H 1.08996 * 109.46942 * 299.80674 * 1 2 3 27 27 H 1.09000 * 109.47219 * 59.80649 * 1 2 3 28 28 H 1.09001 * 108.81625 * 41.63156 * 4 2 1 29 29 H 1.08997 * 108.72710 * 283.29022 * 4 2 1 30 30 H 1.09002 * 108.88252 * 280.93816 * 5 4 2 31 31 H 1.08998 * 108.80168 * 162.43678 * 5 4 2 32 32 H 1.08997 * 109.63025 * 146.14266 * 6 5 4 33 33 H 1.09004 * 109.62688 * 25.56043 * 6 5 4 34 34 H 1.09004 * 108.89220 * 319.23317 * 7 6 5 35 35 H 1.09000 * 108.89339 * 200.74118 * 7 6 5 36 36 H 1.09002 * 108.89601 * 177.31058 * 8 7 6 37 37 H 1.09000 * 108.81885 * 58.76439 * 8 7 6 38 38 H 1.09006 * 109.46520 * 68.54159 * 12 11 9 39 39 H 1.08998 * 109.47124 * 188.53390 * 12 11 9 40 40 H 1.08994 * 109.47350 * 308.54380 * 12 11 9 41 41 H 1.09001 * 109.46642 * 289.99636 * 13 11 9 42 42 H 1.08997 * 109.47585 * 49.99447 * 13 11 9 43 43 H 1.09001 * 109.46981 * 299.99314 * 14 13 11 44 44 H 1.08999 * 109.47378 * 59.99788 * 14 13 11 45 45 H 1.08998 * 109.47326 * 300.00014 * 15 14 13 46 46 H 1.09007 * 109.47011 * 59.99958 * 15 14 13 47 47 H 1.09001 * 109.47442 * 299.99976 * 16 15 14 48 48 H 1.08999 * 109.46930 * 60.00458 * 16 15 14 49 49 H 0.96998 * 119.99999 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8807 1.0320 0.0000 4 6 2.0285 -0.6959 1.2810 5 6 3.5032 -1.1320 1.1888 6 6 4.3714 -0.0917 0.5342 7 6 4.4788 -0.4187 -0.9694 8 6 3.3099 0.0201 -1.7173 9 6 2.0168 -0.6797 -1.2512 10 1 2.2229 -1.7298 -1.0443 11 7 0.9934 -0.5748 -2.2998 12 6 0.8950 0.8015 -2.8037 13 6 1.2618 -1.5181 -3.3935 14 6 0.0581 -1.5609 -4.3369 15 6 0.3379 -2.5429 -5.4764 16 6 -0.8661 -2.5862 -6.4195 17 6 -0.5902 -3.5529 -7.5422 18 1 0.3497 -4.0836 -7.5791 19 6 -1.5381 -3.7607 -8.5217 20 7 -1.2976 -4.6046 -9.5011 21 14 -3.1641 -2.8433 -8.4574 22 1 -3.0392 -1.5623 -9.1981 23 1 -4.2260 -3.6738 -9.0802 24 1 -3.5195 -2.5645 -7.0428 25 1 -0.3634 -1.0277 -0.0034 26 1 -0.3633 0.5108 0.8917 27 1 -0.3634 0.5168 -0.8882 28 1 1.4125 -1.5761 1.4653 29 1 1.9171 -0.0078 2.1189 30 1 3.5628 -2.0548 0.6118 31 1 3.8772 -1.3209 2.1950 32 1 5.3641 -0.1075 0.9840 33 1 3.9232 0.8934 0.6636 34 1 4.5903 -1.4963 -1.0892 35 1 5.3627 0.0732 -1.3753 36 1 3.4661 -0.1948 -2.7745 37 1 3.1945 1.0965 -1.5897 38 1 1.8018 1.0525 -3.3542 39 1 0.0332 0.8853 -3.4658 40 1 0.7773 1.4879 -1.9652 41 1 2.1442 -1.1933 -3.9449 42 1 1.4362 -2.5120 -2.9816 43 1 -0.8243 -1.8857 -3.7855 44 1 -0.1163 -0.5670 -4.7489 45 1 1.2202 -2.2178 -6.0277 46 1 0.5125 -3.5370 -5.0647 47 1 -1.7482 -2.9115 -5.8679 48 1 -1.0410 -1.5923 -6.8312 49 1 -1.9644 -4.7505 -10.1904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709173081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:02 Heat of formation + Delta-G solvation = -30.027316 kcal Electronic energy + Delta-G solvation = -21412.547621 eV Core-core repulsion = 18566.208049 eV Total energy + Delta-G solvation = -2846.339573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25668 -36.79675 -34.55450 -33.69532 -32.37867 -31.08895 -28.76992 -27.78796 -26.29646 -25.05461 -23.06680 -22.83698 -21.05191 -20.16494 -19.99250 -18.81100 -16.64467 -16.21596 -15.71299 -15.18182 -15.16172 -14.56501 -14.31458 -14.03599 -13.95799 -13.61104 -12.98607 -12.81234 -12.74828 -12.48827 -12.32506 -11.90615 -11.78265 -11.75785 -11.63966 -11.46590 -11.11684 -10.95529 -10.94049 -10.76121 -10.65190 -10.48659 -10.41482 -10.36554 -10.27015 -9.80833 -9.62258 -9.41757 -9.10586 -8.49239 -8.15352 -5.99963 -3.97292 3.34165 3.41269 3.46383 3.96789 4.33733 4.44326 4.49722 4.70681 4.88766 4.90536 4.99793 5.10715 5.16219 5.19840 5.30382 5.34151 5.37657 5.53721 5.55312 5.58408 5.59217 5.65894 5.74178 5.84170 5.87795 5.90755 5.92438 5.96069 5.97814 6.01084 6.04643 6.08795 6.15797 6.19801 6.23598 6.33054 6.46348 6.49743 6.72297 6.83478 6.97816 7.17463 7.24647 7.39330 7.52489 7.85759 8.59738 9.05532 9.63262 11.13754 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033599 B = 0.003319 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.163275 B = 8433.746084 C = 8790.306117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.148 4.148 9 C 0.092 3.908 10 H 0.081 0.919 11 N -0.530 5.530 12 C 0.017 3.983 13 C 0.055 3.945 14 C -0.115 4.115 15 C -0.101 4.101 16 C -0.013 4.013 17 C -0.519 4.519 18 H 0.070 0.930 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.015 0.985 48 H 0.009 0.991 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 11.755 22.726 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.187 4.187 9 C -0.017 4.017 10 H 0.100 0.900 11 N -0.252 5.252 12 C -0.131 4.131 13 C -0.073 4.073 14 C -0.153 4.153 15 C -0.140 4.140 16 C -0.051 4.051 17 C -0.557 4.557 18 H 0.088 0.912 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.033 0.967 48 H 0.027 0.973 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.597 11.546 22.765 26.935 hybrid contribution -0.004 0.619 -0.565 0.838 sum 8.593 12.165 22.200 26.733 Atomic orbital electron populations 1.21796 0.94216 1.02334 1.00856 1.20925 0.96814 0.98896 0.93312 0.92117 1.21955 0.95431 1.00332 0.97057 1.21368 0.94983 0.99031 1.00467 1.21338 0.99344 0.99511 0.95212 1.20424 0.97977 1.01479 0.95337 1.21149 0.96276 1.00950 1.00292 1.21496 0.88597 0.99949 0.91680 0.90045 1.62424 1.45387 1.05668 1.11704 1.22486 1.00872 0.89901 0.99811 1.22241 0.97656 0.95781 0.91581 1.21679 0.97282 1.00173 0.96184 1.21422 0.99848 0.97529 0.95157 1.19560 0.94042 0.96542 0.94917 1.21204 1.03720 1.23840 1.06950 0.91166 1.25050 0.98446 0.94978 0.95183 1.69920 1.35365 1.36077 1.13217 0.86760 0.83841 0.79867 0.78725 1.20379 1.21458 1.18931 0.92573 0.94596 0.91067 0.92037 0.92465 0.92048 0.92540 0.92230 0.91735 0.92170 0.92589 0.92096 0.92151 0.95518 0.91147 0.91616 0.95043 0.91161 0.91776 0.92673 0.93201 0.92923 0.96672 0.97279 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.15 37.16 0.30 -1.04 16 2 C -0.08 -0.73 1.47 -91.32 -0.13 -0.87 16 3 H 0.06 0.55 6.50 -51.93 -0.34 0.21 16 4 C -0.11 -0.89 5.23 -25.62 -0.13 -1.02 16 5 C -0.12 -0.92 5.31 -27.44 -0.15 -1.07 16 6 C -0.12 -0.87 5.61 -27.34 -0.15 -1.03 16 7 C -0.11 -0.96 5.26 -29.60 -0.16 -1.12 16 8 C -0.15 -1.40 3.38 -29.60 -0.10 -1.50 16 9 C 0.09 0.94 1.66 -68.32 -0.11 0.82 16 10 H 0.08 0.90 6.67 -51.93 -0.35 0.55 16 11 N -0.53 -6.32 3.30 -235.64 -0.78 -7.09 16 12 C 0.02 0.19 7.23 60.06 0.43 0.63 16 13 C 0.05 0.75 4.68 -3.83 -0.02 0.74 16 14 C -0.12 -1.88 5.14 -26.73 -0.14 -2.02 16 15 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 16 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 21 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.77 5.17 -51.93 -0.27 0.50 16 28 H 0.06 0.52 7.97 -51.93 -0.41 0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.50 6.64 -51.93 -0.34 0.16 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 6.98 -51.93 -0.36 0.13 16 34 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.66 6.35 -51.93 -0.33 0.33 16 37 H 0.06 0.57 7.03 -51.93 -0.36 0.20 16 38 H 0.03 0.29 6.84 -51.93 -0.36 -0.06 16 39 H 0.07 0.83 6.69 -51.93 -0.35 0.48 16 40 H 0.07 0.65 6.14 -51.93 -0.32 0.33 16 41 H 0.03 0.44 6.95 -51.93 -0.36 0.08 16 42 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.89 6.65 -51.93 -0.35 0.54 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 47 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 48 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 49 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -30.15 349.18 -9.90 -40.04 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -9.45 Total: -4.17 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -1.04 Total: -23.84 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.00 Total: -34.89 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.15 -9.90 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709173081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.017 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds