Wall clock time and date at job start Mon Mar 30 2020 07:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 108.76635 * 2 1 4 4 C 1.54062 * 108.87515 * 118.51288 * 2 1 3 5 5 C 1.54065 * 112.81574 * 162.49306 * 4 2 1 6 6 C 1.50477 * 112.49746 * 41.71670 * 5 4 2 7 7 C 1.54246 * 108.52338 * 265.85066 * 6 5 4 8 8 C 1.45540 * 112.40448 * 79.98375 * 7 6 5 9 9 C 1.50477 * 108.87357 * 241.48737 * 2 1 3 10 10 H 1.08991 * 109.78877 * 264.87491 * 9 2 1 11 11 N 1.46904 * 109.63010 * 25.36360 * 9 2 1 12 12 C 1.46900 * 111.00013 * 71.42814 * 11 9 2 13 13 C 1.46894 * 110.99953 * 195.38936 * 11 9 2 14 14 C 1.52994 * 109.47102 * 170.00115 * 13 11 9 15 15 C 1.53002 * 109.47248 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47235 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47203 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99472 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00285 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00206 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99854 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47066 * 89.99390 * 21 19 17 23 23 H 1.48502 * 109.47177 * 209.99922 * 21 19 17 24 24 H 1.48503 * 109.47093 * 329.99776 * 21 19 17 25 25 H 1.09005 * 109.47272 * 179.81027 * 1 2 3 26 26 H 1.08996 * 109.46942 * 299.80674 * 1 2 3 27 27 H 1.09000 * 109.47219 * 59.80649 * 1 2 3 28 28 H 1.09001 * 108.81625 * 41.63156 * 4 2 1 29 29 H 1.08997 * 108.72710 * 283.29022 * 4 2 1 30 30 H 1.09002 * 108.88252 * 280.93816 * 5 4 2 31 31 H 1.08998 * 108.80168 * 162.43678 * 5 4 2 32 32 H 1.08997 * 109.63025 * 146.14266 * 6 5 4 33 33 H 1.09004 * 109.62688 * 25.56043 * 6 5 4 34 34 H 1.09004 * 108.89220 * 319.23317 * 7 6 5 35 35 H 1.09000 * 108.89339 * 200.74118 * 7 6 5 36 36 H 1.09002 * 108.89601 * 177.31058 * 8 7 6 37 37 H 1.09000 * 108.81885 * 58.76439 * 8 7 6 38 38 H 1.09006 * 109.46520 * 68.54159 * 12 11 9 39 39 H 1.08998 * 109.47124 * 188.53390 * 12 11 9 40 40 H 1.08994 * 109.47350 * 308.54380 * 12 11 9 41 41 H 1.09001 * 109.46642 * 289.99636 * 13 11 9 42 42 H 1.08997 * 109.47585 * 49.99447 * 13 11 9 43 43 H 1.09001 * 109.46981 * 299.99314 * 14 13 11 44 44 H 1.08999 * 109.47378 * 59.99788 * 14 13 11 45 45 H 1.08998 * 109.47326 * 300.00014 * 15 14 13 46 46 H 1.09007 * 109.47011 * 59.99958 * 15 14 13 47 47 H 1.09001 * 109.47442 * 299.99976 * 16 15 14 48 48 H 1.08999 * 109.46930 * 60.00458 * 16 15 14 49 49 H 0.96998 * 119.99999 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8807 1.0320 0.0000 4 6 2.0285 -0.6959 1.2810 5 6 3.5032 -1.1320 1.1888 6 6 4.3714 -0.0917 0.5342 7 6 4.4788 -0.4187 -0.9694 8 6 3.3099 0.0201 -1.7173 9 6 2.0168 -0.6797 -1.2512 10 1 2.2229 -1.7298 -1.0443 11 7 0.9934 -0.5748 -2.2998 12 6 0.8950 0.8015 -2.8037 13 6 1.2618 -1.5181 -3.3935 14 6 0.0581 -1.5609 -4.3369 15 6 0.3379 -2.5429 -5.4764 16 6 -0.8661 -2.5862 -6.4195 17 6 -0.5902 -3.5529 -7.5422 18 1 0.3497 -4.0836 -7.5791 19 6 -1.5381 -3.7607 -8.5217 20 7 -1.2976 -4.6046 -9.5011 21 14 -3.1641 -2.8433 -8.4574 22 1 -3.0392 -1.5623 -9.1981 23 1 -4.2260 -3.6738 -9.0802 24 1 -3.5195 -2.5645 -7.0428 25 1 -0.3634 -1.0277 -0.0034 26 1 -0.3633 0.5108 0.8917 27 1 -0.3634 0.5168 -0.8882 28 1 1.4125 -1.5761 1.4653 29 1 1.9171 -0.0078 2.1189 30 1 3.5628 -2.0548 0.6118 31 1 3.8772 -1.3209 2.1950 32 1 5.3641 -0.1075 0.9840 33 1 3.9232 0.8934 0.6636 34 1 4.5903 -1.4963 -1.0892 35 1 5.3627 0.0732 -1.3753 36 1 3.4661 -0.1948 -2.7745 37 1 3.1945 1.0965 -1.5897 38 1 1.8018 1.0525 -3.3542 39 1 0.0332 0.8853 -3.4658 40 1 0.7773 1.4879 -1.9652 41 1 2.1442 -1.1933 -3.9449 42 1 1.4362 -2.5120 -2.9816 43 1 -0.8243 -1.8857 -3.7855 44 1 -0.1163 -0.5670 -4.7489 45 1 1.2202 -2.2178 -6.0277 46 1 0.5125 -3.5370 -5.0647 47 1 -1.7482 -2.9115 -5.8679 48 1 -1.0410 -1.5923 -6.8312 49 1 -1.9644 -4.7505 -10.1904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709173081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:01 Heat of formation + Delta-G solvation = -45.458547 kcal Electronic energy + Delta-G solvation = -21413.216770 eV Core-core repulsion = 18566.208049 eV Total energy + Delta-G solvation = -2847.008721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06059 -37.79748 -36.09856 -34.62015 -34.14689 -32.21518 -30.27237 -28.60448 -27.33563 -26.32471 -24.30111 -23.58499 -22.27880 -21.69865 -20.99812 -19.56437 -18.84928 -17.11644 -16.67089 -16.40968 -16.15221 -15.88280 -15.56591 -15.02160 -14.86726 -14.67700 -14.62633 -13.83119 -13.80932 -13.65422 -13.43325 -13.26894 -13.18859 -12.86435 -12.66297 -12.48681 -12.29532 -12.18291 -11.99678 -11.80317 -11.71305 -11.65879 -11.42094 -11.38409 -11.29235 -11.27113 -11.09247 -11.03480 -10.88733 -10.76638 -9.09536 -8.30063 -6.34175 1.35336 1.37654 1.50405 2.36386 3.00983 3.05290 3.61106 3.74775 4.03237 4.10271 4.17183 4.18187 4.21913 4.32928 4.43386 4.46468 4.46899 4.51236 4.57829 4.59484 4.71528 4.81647 4.84917 4.89053 4.92888 4.97162 5.00874 5.09354 5.15630 5.16977 5.17440 5.20013 5.27337 5.29151 5.32039 5.35117 5.40737 5.41787 5.53671 5.58352 5.60959 5.65651 5.68551 5.70706 6.21565 6.26782 6.30558 6.74058 7.30688 8.87064 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033599 B = 0.003319 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.163275 B = 8433.746084 C = 8790.306117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.140 4.140 9 C 0.093 3.907 10 H 0.072 0.928 11 N -0.534 5.534 12 C 0.019 3.981 13 C 0.063 3.937 14 C -0.102 4.102 15 C -0.095 4.095 16 C -0.011 4.011 17 C -0.535 4.535 18 H 0.029 0.971 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.246 1.246 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.045 0.955 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 13.754 24.689 29.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 H 0.085 0.915 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.179 4.179 9 C -0.015 4.015 10 H 0.090 0.910 11 N -0.256 5.256 12 C -0.129 4.129 13 C -0.065 4.065 14 C -0.140 4.140 15 C -0.133 4.133 16 C -0.048 4.048 17 C -0.573 4.573 18 H 0.047 0.953 19 C -0.196 4.196 20 N -0.595 5.595 21 Si 0.777 3.223 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.170 1.170 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.035 0.965 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.027 13.553 24.750 29.338 hybrid contribution 0.263 -0.067 -1.194 1.224 sum 8.290 13.486 23.557 28.382 Atomic orbital electron populations 1.21747 0.94702 1.01425 1.00992 1.20889 0.96285 0.99169 0.93118 0.91478 1.21931 0.95615 1.00252 0.96725 1.21359 0.94733 0.98683 1.00968 1.21311 0.99911 0.99462 0.94280 1.20418 0.97610 1.01103 0.96115 1.21079 0.96282 1.01108 0.99467 1.21509 0.88609 0.99753 0.91658 0.90965 1.62398 1.46177 1.05814 1.11194 1.22497 1.00530 0.89581 1.00308 1.22038 0.96270 0.96395 0.91753 1.21490 0.98293 0.99050 0.95153 1.21295 0.97838 0.98477 0.95670 1.19524 0.95869 0.95301 0.94111 1.21576 1.02341 1.24549 1.08859 0.95275 1.26080 1.02971 0.95943 0.94562 1.70075 1.37119 1.37962 1.14303 0.85599 0.78248 0.78619 0.79832 1.19043 1.20860 1.16993 0.93951 0.93524 0.91859 0.92579 0.91422 0.92899 0.91509 0.91252 0.91468 0.92799 0.92147 0.93596 0.91641 0.95532 0.91816 0.90115 0.95219 0.91394 0.91911 0.92101 0.93771 0.93596 0.96358 0.96504 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.15 71.98 0.59 -1.78 16 2 C -0.08 -1.23 1.47 -11.25 -0.02 -1.25 16 3 H 0.07 1.03 6.50 -2.39 -0.02 1.02 16 4 C -0.11 -1.52 5.23 31.31 0.16 -1.35 16 5 C -0.12 -1.59 5.31 30.14 0.16 -1.43 16 6 C -0.11 -1.43 5.61 30.20 0.17 -1.26 16 7 C -0.11 -1.75 5.26 28.74 0.15 -1.60 16 8 C -0.14 -2.47 3.38 28.74 0.10 -2.37 16 9 C 0.09 1.78 1.66 44.52 0.07 1.85 16 10 H 0.07 1.53 6.67 -2.39 -0.02 1.51 16 11 N -0.53 -12.02 3.30 -899.42 -2.97 -14.99 16 12 C 0.02 0.38 7.23 127.69 0.92 1.30 16 13 C 0.06 1.69 4.68 86.30 0.40 2.09 16 14 C -0.10 -3.21 5.14 30.59 0.16 -3.06 16 15 C -0.09 -3.80 5.15 30.59 0.16 -3.64 16 16 C -0.01 -0.52 4.04 29.85 0.12 -0.39 16 17 C -0.54 -32.09 9.66 25.60 0.25 -31.84 16 18 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 19 C 0.00 0.04 5.47 84.66 0.46 0.51 16 20 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 21 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 25 H 0.04 0.87 8.14 -2.38 -0.02 0.86 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.24 5.17 -2.39 -0.01 1.23 16 28 H 0.06 0.86 7.97 -2.39 -0.02 0.84 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.80 6.64 -2.39 -0.02 0.78 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.84 6.98 -2.38 -0.02 0.83 16 34 H 0.05 0.89 7.47 -2.39 -0.02 0.88 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.95 6.35 -2.39 -0.02 0.93 16 37 H 0.06 1.09 7.03 -2.39 -0.02 1.07 16 38 H 0.03 0.54 6.84 -2.38 -0.02 0.53 16 39 H 0.06 1.39 6.69 -2.39 -0.02 1.37 16 40 H 0.08 1.40 6.14 -2.39 -0.01 1.39 16 41 H 0.03 0.80 6.95 -2.39 -0.02 0.79 16 42 H 0.07 1.84 7.87 -2.39 -0.02 1.82 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 1.86 6.65 -2.39 -0.02 1.84 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 48 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16 49 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -65.15 349.18 3.89 -61.25 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.82 Total: 11.76 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 3.86 Total: -44.23 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.67 Total: -76.11 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -65.15 3.89 -61.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709173081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.793 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds