Wall clock time and date at job start Mon Mar 30 2020 07:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.62469 * 2 1 4 4 C 1.54235 * 109.62981 * 239.41658 * 2 1 3 5 5 C 1.45535 * 112.41314 * 160.28949 * 4 2 1 6 6 C 1.54245 * 112.40150 * 61.93691 * 5 4 2 7 7 C 1.50479 * 108.52809 * 280.02370 * 6 5 4 8 8 C 1.54070 * 112.49936 * 94.14428 * 7 6 5 9 9 C 1.50471 * 109.63276 * 120.38876 * 2 1 3 10 10 H 1.09003 * 108.87304 * 93.18602 * 9 2 1 11 11 N 1.46899 * 108.88004 * 334.64385 * 9 2 1 12 12 C 1.46897 * 111.00354 * 164.75839 * 11 9 2 13 13 C 1.46899 * 110.99506 * 288.71776 * 11 9 2 14 14 C 1.53009 * 109.46873 * 163.94371 * 13 11 9 15 15 C 1.52999 * 109.46955 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47012 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47378 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99723 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99819 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00273 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99646 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47358 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47053 * 300.00406 * 21 19 17 24 24 H 1.48505 * 109.46942 * 60.00218 * 21 19 17 25 25 H 1.09003 * 109.46925 * 294.87102 * 1 2 3 26 26 H 1.08995 * 109.47816 * 54.87414 * 1 2 3 27 27 H 1.08997 * 109.46746 * 174.87983 * 1 2 3 28 28 H 1.09006 * 108.89449 * 281.04654 * 4 2 1 29 29 H 1.09004 * 108.89558 * 39.52925 * 4 2 1 30 30 H 1.09003 * 108.89876 * 182.68429 * 5 4 2 31 31 H 1.09000 * 108.90050 * 301.28053 * 5 4 2 32 32 H 1.08998 * 109.63128 * 39.73805 * 6 5 4 33 33 H 1.09005 * 109.62760 * 160.31391 * 6 5 4 34 34 H 1.08994 * 108.87577 * 214.92406 * 7 6 5 35 35 H 1.08998 * 108.87335 * 333.46847 * 7 6 5 36 36 H 1.08996 * 108.81206 * 197.42692 * 8 7 6 37 37 H 1.08995 * 108.81477 * 79.14085 * 8 7 6 38 38 H 1.08997 * 109.47169 * 189.12633 * 12 11 9 39 39 H 1.08997 * 109.47032 * 309.13274 * 12 11 9 40 40 H 1.09002 * 109.46623 * 69.12767 * 12 11 9 41 41 H 1.08996 * 109.47990 * 43.94177 * 13 11 9 42 42 H 1.09002 * 109.47047 * 283.93364 * 13 11 9 43 43 H 1.09002 * 109.47286 * 59.99815 * 14 13 11 44 44 H 1.08993 * 109.46617 * 299.99533 * 14 13 11 45 45 H 1.09002 * 109.46960 * 60.00000 * 15 14 13 46 46 H 1.08998 * 109.47118 * 300.00124 * 15 14 13 47 47 H 1.09002 * 109.47597 * 59.99503 * 16 15 14 48 48 H 1.09007 * 109.47144 * 299.99856 * 16 15 14 49 49 H 0.97002 * 119.99478 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0481 -0.7391 -1.2506 5 6 3.4275 -0.3979 -1.5651 6 6 4.4029 -0.7948 -0.4380 7 6 4.3395 0.2531 0.6401 8 6 3.3469 -0.1128 1.7602 9 6 2.0356 -0.7169 1.2225 10 1 2.2080 -1.7635 0.9714 11 7 1.0122 -0.6434 2.2739 12 6 1.2851 -1.6133 3.3429 13 6 0.9084 0.7191 2.8129 14 6 -0.4003 0.8606 3.5930 15 6 -0.5082 2.2795 4.1550 16 6 -1.8171 2.4212 4.9344 17 6 -1.9237 3.8190 5.4875 18 1 -1.1368 4.5349 5.3012 19 6 -3.0264 4.1842 6.2303 20 7 -3.9849 3.3126 6.4566 21 14 -3.1582 5.9166 6.9164 22 1 -4.4287 6.0542 7.6728 23 1 -2.0118 6.1784 7.8233 24 1 -3.1386 6.8944 5.7988 25 1 -0.3633 0.4322 0.9324 26 1 -0.3634 0.5912 -0.8404 27 1 -0.3633 -1.0236 -0.0917 28 1 1.9806 -1.8135 -1.0790 29 1 1.4175 -0.4792 -2.1009 30 1 3.7185 -0.9124 -2.4810 31 1 3.4969 0.6777 -1.7276 32 1 4.1130 -1.7616 -0.0265 33 1 5.4168 -0.8515 -0.8343 34 1 5.3322 0.3731 1.0740 35 1 4.0331 1.1994 0.1945 36 1 3.1121 0.7867 2.3293 37 1 3.8191 -0.8345 2.4265 38 1 0.4343 -1.6533 4.0230 39 1 1.4482 -2.5987 2.9066 40 1 2.1754 -1.3073 3.8924 41 1 0.9217 1.4366 1.9925 42 1 1.7503 0.9119 3.4780 43 1 -0.4136 0.1432 4.4135 44 1 -1.2421 0.6678 2.9280 45 1 -0.4947 2.9972 3.3347 46 1 0.3337 2.4719 4.8199 47 1 -1.8311 1.7034 5.7546 48 1 -2.6589 2.2289 4.2690 49 1 -4.7604 3.5695 6.9795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709173084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:04 Heat of formation + Delta-G solvation = -31.239114 kcal Electronic energy + Delta-G solvation = -21551.231252 eV Core-core repulsion = 18704.839132 eV Total energy + Delta-G solvation = -2846.392120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18895 -36.86962 -34.34333 -33.39136 -32.31725 -31.12245 -28.81148 -27.32599 -26.01556 -24.94095 -23.12072 -22.73279 -21.16903 -20.56158 -19.96968 -18.46130 -16.24750 -15.88085 -15.74414 -15.17684 -14.97525 -14.52703 -14.36005 -14.16268 -13.78077 -13.56204 -12.91544 -12.81834 -12.44744 -12.35617 -12.16787 -11.92844 -11.77215 -11.57100 -11.44152 -11.23880 -11.07745 -10.86549 -10.77079 -10.66992 -10.51518 -10.46680 -10.42786 -10.29491 -10.17955 -10.08511 -9.55452 -9.21012 -8.96805 -8.29220 -8.09323 -5.94451 -3.96578 3.36163 3.40290 3.42891 4.03905 4.39135 4.50314 4.51938 4.77819 4.92305 4.98678 5.04509 5.17820 5.21063 5.28242 5.37780 5.41029 5.46343 5.54961 5.61709 5.66551 5.70317 5.75397 5.81018 5.93704 5.94112 5.95938 6.00435 6.03402 6.04878 6.08866 6.16104 6.19536 6.24014 6.29056 6.33246 6.47123 6.58509 6.73061 6.88382 7.05899 7.15971 7.26094 7.33690 7.74849 7.91708 8.07101 8.49944 9.10856 9.67020 11.16864 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031246 B = 0.003320 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.889061 B = 8432.878274 C = 8490.888185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.113 4.113 8 C -0.154 4.154 9 C 0.091 3.909 10 H 0.074 0.926 11 N -0.532 5.532 12 C 0.022 3.978 13 C 0.051 3.949 14 C -0.112 4.112 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.043 0.957 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.840 -10.565 -14.578 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.193 4.193 9 C -0.017 4.017 10 H 0.092 0.908 11 N -0.254 5.254 12 C -0.127 4.127 13 C -0.076 4.076 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.559 4.559 18 H 0.071 0.929 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.198 -10.721 -14.687 23.699 hybrid contribution 0.720 1.126 0.895 1.609 sum 15.918 -9.595 -13.792 23.144 Atomic orbital electron populations 1.21785 0.93800 1.01638 1.02136 1.20899 0.96891 0.98931 0.93049 0.91493 1.20517 0.96083 1.00383 0.98024 1.20510 0.95491 1.01436 0.98071 1.21351 0.98882 0.99281 0.95976 1.21265 0.98612 0.99124 0.96164 1.22681 0.96490 1.01670 0.98460 1.21592 0.88481 0.99659 0.92001 0.90815 1.62552 1.44965 1.06148 1.11695 1.22414 1.00225 0.95587 0.94442 1.22335 0.98025 0.89107 0.98128 1.21657 0.95916 0.98658 0.98790 1.21597 1.00611 0.93556 0.98982 1.19073 0.91199 0.96489 0.94704 1.21265 1.04607 0.97570 1.32429 0.92869 1.25027 0.95884 0.97167 0.96419 1.69960 1.09151 1.34382 1.40088 0.86683 0.77221 0.85095 0.79142 1.21311 1.20308 1.20257 0.90198 0.94336 0.92997 0.92334 0.92140 0.92613 0.92233 0.91787 0.92271 0.92677 0.92029 0.91250 0.92623 0.90982 0.92178 0.95872 0.90872 0.94910 0.92709 0.91778 0.93577 0.93838 0.96807 0.96642 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.30 37.16 0.31 -1.31 16 2 C -0.08 -0.83 1.55 -91.24 -0.14 -0.97 16 3 H 0.07 0.75 6.79 -51.93 -0.35 0.39 16 4 C -0.11 -0.99 4.68 -29.60 -0.14 -1.13 16 5 C -0.12 -0.94 5.27 -29.60 -0.16 -1.09 16 6 C -0.12 -0.93 5.61 -27.34 -0.15 -1.08 16 7 C -0.11 -1.00 5.32 -27.43 -0.15 -1.15 16 8 C -0.15 -1.58 4.58 -25.62 -0.12 -1.69 16 9 C 0.09 0.98 1.50 -68.42 -0.10 0.88 16 10 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 11 N -0.53 -6.69 3.21 -235.74 -0.76 -7.45 16 12 C 0.02 0.26 9.03 60.06 0.54 0.80 16 13 C 0.05 0.73 2.55 -3.82 -0.01 0.72 16 14 C -0.11 -1.95 5.17 -26.73 -0.14 -2.09 16 15 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.08 1.11 4.56 -51.93 -0.24 0.87 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 29 H 0.06 0.53 7.97 -51.93 -0.41 0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 32 H 0.06 0.52 6.97 -51.93 -0.36 0.16 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.57 6.63 -51.93 -0.34 0.22 16 36 H 0.07 0.80 5.60 -51.93 -0.29 0.51 16 37 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 38 H 0.07 0.91 6.92 -51.93 -0.36 0.55 16 39 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 40 H 0.02 0.27 7.33 -51.93 -0.38 -0.11 16 41 H 0.07 1.04 6.28 -51.93 -0.33 0.72 16 42 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 43 H 0.05 0.97 6.88 -51.93 -0.36 0.61 16 44 H 0.06 1.15 7.56 -51.93 -0.39 0.76 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -29.60 351.91 -10.10 -39.70 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -9.42 Total: -3.79 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -0.94 Total: -24.00 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.02 Total: -34.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.60 -10.10 -39.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709173084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.458 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds