Wall clock time and date at job start Mon Mar 30 2020 07:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.62469 * 2 1 4 4 C 1.54235 * 109.62981 * 239.41658 * 2 1 3 5 5 C 1.45535 * 112.41314 * 160.28949 * 4 2 1 6 6 C 1.54245 * 112.40150 * 61.93691 * 5 4 2 7 7 C 1.50479 * 108.52809 * 280.02370 * 6 5 4 8 8 C 1.54070 * 112.49936 * 94.14428 * 7 6 5 9 9 C 1.50471 * 109.63276 * 120.38876 * 2 1 3 10 10 H 1.09003 * 108.87304 * 93.18602 * 9 2 1 11 11 N 1.46899 * 108.88004 * 334.64385 * 9 2 1 12 12 C 1.46897 * 111.00354 * 164.75839 * 11 9 2 13 13 C 1.46899 * 110.99506 * 288.71776 * 11 9 2 14 14 C 1.53009 * 109.46873 * 163.94371 * 13 11 9 15 15 C 1.52999 * 109.46955 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47012 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47378 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99723 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99819 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00273 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99646 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47358 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47053 * 300.00406 * 21 19 17 24 24 H 1.48505 * 109.46942 * 60.00218 * 21 19 17 25 25 H 1.09003 * 109.46925 * 294.87102 * 1 2 3 26 26 H 1.08995 * 109.47816 * 54.87414 * 1 2 3 27 27 H 1.08997 * 109.46746 * 174.87983 * 1 2 3 28 28 H 1.09006 * 108.89449 * 281.04654 * 4 2 1 29 29 H 1.09004 * 108.89558 * 39.52925 * 4 2 1 30 30 H 1.09003 * 108.89876 * 182.68429 * 5 4 2 31 31 H 1.09000 * 108.90050 * 301.28053 * 5 4 2 32 32 H 1.08998 * 109.63128 * 39.73805 * 6 5 4 33 33 H 1.09005 * 109.62760 * 160.31391 * 6 5 4 34 34 H 1.08994 * 108.87577 * 214.92406 * 7 6 5 35 35 H 1.08998 * 108.87335 * 333.46847 * 7 6 5 36 36 H 1.08996 * 108.81206 * 197.42692 * 8 7 6 37 37 H 1.08995 * 108.81477 * 79.14085 * 8 7 6 38 38 H 1.08997 * 109.47169 * 189.12633 * 12 11 9 39 39 H 1.08997 * 109.47032 * 309.13274 * 12 11 9 40 40 H 1.09002 * 109.46623 * 69.12767 * 12 11 9 41 41 H 1.08996 * 109.47990 * 43.94177 * 13 11 9 42 42 H 1.09002 * 109.47047 * 283.93364 * 13 11 9 43 43 H 1.09002 * 109.47286 * 59.99815 * 14 13 11 44 44 H 1.08993 * 109.46617 * 299.99533 * 14 13 11 45 45 H 1.09002 * 109.46960 * 60.00000 * 15 14 13 46 46 H 1.08998 * 109.47118 * 300.00124 * 15 14 13 47 47 H 1.09002 * 109.47597 * 59.99503 * 16 15 14 48 48 H 1.09007 * 109.47144 * 299.99856 * 16 15 14 49 49 H 0.97002 * 119.99478 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0481 -0.7391 -1.2506 5 6 3.4275 -0.3979 -1.5651 6 6 4.4029 -0.7948 -0.4380 7 6 4.3395 0.2531 0.6401 8 6 3.3469 -0.1128 1.7602 9 6 2.0356 -0.7169 1.2225 10 1 2.2080 -1.7635 0.9714 11 7 1.0122 -0.6434 2.2739 12 6 1.2851 -1.6133 3.3429 13 6 0.9084 0.7191 2.8129 14 6 -0.4003 0.8606 3.5930 15 6 -0.5082 2.2795 4.1550 16 6 -1.8171 2.4212 4.9344 17 6 -1.9237 3.8190 5.4875 18 1 -1.1368 4.5349 5.3012 19 6 -3.0264 4.1842 6.2303 20 7 -3.9849 3.3126 6.4566 21 14 -3.1582 5.9166 6.9164 22 1 -4.4287 6.0542 7.6728 23 1 -2.0118 6.1784 7.8233 24 1 -3.1386 6.8944 5.7988 25 1 -0.3633 0.4322 0.9324 26 1 -0.3634 0.5912 -0.8404 27 1 -0.3633 -1.0236 -0.0917 28 1 1.9806 -1.8135 -1.0790 29 1 1.4175 -0.4792 -2.1009 30 1 3.7185 -0.9124 -2.4810 31 1 3.4969 0.6777 -1.7276 32 1 4.1130 -1.7616 -0.0265 33 1 5.4168 -0.8515 -0.8343 34 1 5.3322 0.3731 1.0740 35 1 4.0331 1.1994 0.1945 36 1 3.1121 0.7867 2.3293 37 1 3.8191 -0.8345 2.4265 38 1 0.4343 -1.6533 4.0230 39 1 1.4482 -2.5987 2.9066 40 1 2.1754 -1.3073 3.8924 41 1 0.9217 1.4366 1.9925 42 1 1.7503 0.9119 3.4780 43 1 -0.4136 0.1432 4.4135 44 1 -1.2421 0.6678 2.9280 45 1 -0.4947 2.9972 3.3347 46 1 0.3337 2.4719 4.8199 47 1 -1.8311 1.7034 5.7546 48 1 -2.6589 2.2289 4.2690 49 1 -4.7604 3.5695 6.9795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709173084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:03 Heat of formation + Delta-G solvation = -45.560165 kcal Electronic energy + Delta-G solvation = -21551.852260 eV Core-core repulsion = 18704.839132 eV Total energy + Delta-G solvation = -2847.013128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06657 -37.86922 -36.10892 -34.25169 -34.14677 -32.08985 -30.45282 -28.23050 -27.32860 -26.24348 -24.41332 -23.68891 -22.45082 -21.71299 -21.25174 -19.38612 -18.42365 -16.83446 -16.81204 -16.53719 -16.14224 -15.91894 -15.33705 -15.25636 -14.67383 -14.63277 -14.36318 -13.88939 -13.74720 -13.62878 -13.31177 -13.19808 -13.05264 -12.83484 -12.74011 -12.57905 -12.32748 -12.28893 -12.20174 -11.97861 -11.69144 -11.48599 -11.45712 -11.32496 -11.26826 -11.13658 -11.06163 -10.97994 -10.87833 -10.54790 -9.09908 -8.19472 -6.31218 1.39142 1.42767 1.50724 2.41006 3.02793 3.12991 3.63093 3.79252 4.02817 4.10254 4.14248 4.17395 4.27113 4.30337 4.41652 4.46659 4.54406 4.56985 4.60333 4.63087 4.69477 4.83084 4.85981 4.90141 4.94166 4.95038 5.03053 5.08763 5.17532 5.21350 5.25581 5.27223 5.28641 5.33193 5.34690 5.37755 5.42415 5.48761 5.54503 5.54967 5.63509 5.75706 5.78617 5.87499 6.19943 6.25499 6.30629 6.86122 7.38038 8.92250 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031246 B = 0.003320 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.889061 B = 8432.878274 C = 8490.888185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.061 0.939 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.150 4.150 9 C 0.095 3.905 10 H 0.082 0.918 11 N -0.539 5.539 12 C 0.022 3.978 13 C 0.067 3.933 14 C -0.101 4.101 15 C -0.096 4.096 16 C 0.026 3.974 17 C -0.546 4.546 18 H 0.059 0.941 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.282 1.282 23 H -0.266 1.266 24 H -0.266 1.266 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.047 0.953 47 H -0.012 1.012 48 H -0.011 1.011 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.528 -10.250 -15.479 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.189 4.189 9 C -0.013 4.013 10 H 0.100 0.900 11 N -0.261 5.261 12 C -0.126 4.126 13 C -0.060 4.060 14 C -0.139 4.139 15 C -0.134 4.134 16 C -0.012 4.012 17 C -0.584 4.584 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.207 1.207 23 H -0.191 1.191 24 H -0.191 1.191 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.006 0.994 48 H 0.007 0.993 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.905 -10.413 -15.601 25.250 hybrid contribution 0.160 0.979 1.169 1.533 sum 17.064 -9.434 -14.431 24.258 Atomic orbital electron populations 1.21725 0.94946 1.01302 1.01085 1.20880 0.95800 0.98925 0.93950 0.92069 1.20465 0.96715 1.00205 0.97046 1.20493 0.94816 1.01474 0.98629 1.21339 0.99572 0.98758 0.95555 1.21250 0.98375 0.99276 0.95984 1.22626 0.96478 1.00916 0.98869 1.21625 0.88201 1.00201 0.91278 0.90040 1.62487 1.46295 1.05142 1.12204 1.22423 0.99749 0.96239 0.94213 1.22051 0.95867 0.90447 0.97683 1.21475 0.97629 0.96103 0.98689 1.21399 0.97551 0.96020 0.98470 1.18991 0.93177 0.95107 0.93881 1.21724 1.05112 0.98685 1.32910 0.92228 1.26021 0.95348 1.02003 0.96613 1.70102 1.09798 1.36812 1.40756 0.85493 0.77594 0.79247 0.78673 1.20741 1.19121 1.19066 0.92388 0.93958 0.93195 0.92043 0.91920 0.91372 0.92449 0.91814 0.91097 0.92083 0.92442 0.92712 0.92428 0.92297 0.90438 0.95558 0.90765 0.94788 0.93244 0.92726 0.93168 0.93437 0.99409 0.99300 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.30 71.98 0.60 -2.50 16 2 C -0.08 -1.51 1.55 -11.19 -0.02 -1.53 16 3 H 0.06 1.29 6.79 -2.38 -0.02 1.27 16 4 C -0.11 -1.67 4.68 28.73 0.13 -1.53 16 5 C -0.12 -1.57 5.27 28.74 0.15 -1.42 16 6 C -0.11 -1.53 5.61 30.20 0.17 -1.36 16 7 C -0.11 -1.74 5.32 30.14 0.16 -1.58 16 8 C -0.15 -2.83 4.58 31.32 0.14 -2.69 16 9 C 0.10 1.90 1.50 44.46 0.07 1.97 16 10 H 0.08 1.55 6.32 -2.39 -0.02 1.53 16 11 N -0.54 -13.18 3.21 -899.76 -2.88 -16.06 16 12 C 0.02 0.50 9.03 127.69 1.15 1.65 16 13 C 0.07 1.89 2.55 86.31 0.22 2.11 16 14 C -0.10 -3.58 5.17 30.60 0.16 -3.42 16 15 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16 16 C 0.03 1.41 4.97 29.85 0.15 1.56 16 17 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 20 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 21 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H 0.06 1.61 4.56 -2.39 -0.01 1.60 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.06 0.94 7.47 -2.38 -0.02 0.92 16 29 H 0.06 0.97 7.97 -2.38 -0.02 0.95 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.81 7.47 -2.39 -0.02 0.80 16 32 H 0.06 0.87 6.97 -2.39 -0.02 0.85 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.96 6.63 -2.39 -0.02 0.94 16 36 H 0.05 1.20 5.60 -2.39 -0.01 1.19 16 37 H 0.06 1.07 7.70 -2.39 -0.02 1.05 16 38 H 0.06 1.48 6.92 -2.39 -0.02 1.47 16 39 H 0.08 1.48 7.89 -2.39 -0.02 1.46 16 40 H 0.03 0.58 7.33 -2.39 -0.02 0.56 16 41 H 0.07 2.09 6.28 -2.39 -0.02 2.07 16 42 H 0.03 0.96 6.61 -2.39 -0.02 0.94 16 43 H 0.05 1.79 6.88 -2.39 -0.02 1.77 16 44 H 0.05 2.03 7.56 -2.39 -0.02 2.01 16 45 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 49 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -63.74 351.91 4.24 -59.50 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.87 Total: 11.88 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 3.94 Total: -44.32 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -2.60 Total: -74.24 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -63.74 4.24 -59.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709173084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.943 kcal (2) G-P(sol) polarization free energy of solvation -63.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds