Wall clock time and date at job start Mon Mar 30 2020 07:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 108.78189 * 2 1 4 4 C 1.54068 * 108.81265 * 118.40683 * 2 1 3 5 5 C 1.50477 * 112.49252 * 162.46456 * 4 2 1 6 6 C 1.54237 * 108.52508 * 265.84792 * 5 4 2 7 7 C 1.45538 * 112.32643 * 80.04011 * 6 5 4 8 8 C 1.54251 * 112.40051 * 297.91679 * 7 6 5 9 9 C 1.50479 * 108.43938 * 80.12658 * 8 7 6 10 10 H 1.09000 * 108.87206 * 26.60616 * 9 8 7 11 11 N 1.46899 * 108.87794 * 145.05299 * 9 8 7 12 12 C 1.46904 * 110.99732 * 303.00331 * 11 9 8 13 13 C 1.46892 * 110.99997 * 179.04891 * 11 9 8 14 14 C 1.53005 * 109.47353 * 190.00037 * 13 11 9 15 15 C 1.52997 * 109.47072 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46750 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47010 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00079 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99834 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00185 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99951 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47283 * 89.99357 * 21 19 17 23 23 H 1.48499 * 109.47007 * 209.99440 * 21 19 17 24 24 H 1.48501 * 109.46864 * 329.99533 * 21 19 17 25 25 H 1.08998 * 109.47169 * 295.69087 * 1 2 3 26 26 H 1.09003 * 109.47071 * 55.68609 * 1 2 3 27 27 H 1.08999 * 109.47399 * 175.69036 * 1 2 3 28 28 H 1.09002 * 108.87619 * 41.68916 * 4 2 1 29 29 H 1.08996 * 108.87826 * 283.24240 * 4 2 1 30 30 H 1.09004 * 109.62051 * 146.13937 * 5 4 2 31 31 H 1.08995 * 109.78671 * 25.65653 * 5 4 2 32 32 H 1.08991 * 108.89777 * 200.74735 * 6 5 4 33 33 H 1.08997 * 108.89309 * 319.33625 * 6 5 4 34 34 H 1.09001 * 108.90136 * 58.77090 * 7 6 5 35 35 H 1.09008 * 108.89339 * 177.26632 * 7 6 5 36 36 H 1.08998 * 109.68602 * 320.43496 * 8 7 6 37 37 H 1.09001 * 109.81349 * 199.89409 * 8 7 6 38 38 H 1.08999 * 109.47256 * 68.46555 * 12 11 9 39 39 H 1.09002 * 109.46786 * 188.46366 * 12 11 9 40 40 H 1.08993 * 109.47141 * 308.46064 * 12 11 9 41 41 H 1.09004 * 109.47129 * 310.00158 * 13 11 9 42 42 H 1.09000 * 109.47516 * 69.99904 * 13 11 9 43 43 H 1.08996 * 109.46807 * 300.00018 * 14 13 11 44 44 H 1.09000 * 109.46918 * 59.99500 * 14 13 11 45 45 H 1.08996 * 109.47356 * 299.99728 * 15 14 13 46 46 H 1.09000 * 109.47619 * 59.99975 * 15 14 13 47 47 H 1.09004 * 109.47306 * 299.99479 * 16 15 14 48 48 H 1.08994 * 109.47501 * 59.99870 * 16 15 14 49 49 H 0.97003 * 119.99729 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8809 1.0319 0.0000 4 6 2.0268 -0.6938 1.2828 5 6 3.4673 -1.1181 1.1868 6 6 3.5155 -2.5863 0.7167 7 6 3.3353 -2.7124 -0.7219 8 6 1.9601 -2.1934 -1.1899 9 6 2.0246 -0.6930 -1.2840 10 1 3.0565 -0.3954 -1.4703 11 7 1.1942 -0.2514 -2.4125 12 6 1.6267 -0.8866 -3.6645 13 6 1.2058 1.2124 -2.5335 14 6 0.1465 1.6488 -3.5477 15 6 0.1582 3.1736 -3.6732 16 6 -0.9015 3.6099 -4.6870 17 6 -0.8896 5.1118 -4.8111 18 1 -0.1960 5.6966 -4.2252 19 6 -1.7650 5.7392 -5.6719 20 7 -2.6100 5.0271 -6.3850 21 14 -1.7508 7.6009 -5.8252 22 1 -0.8015 8.0023 -6.8943 23 1 -3.1140 8.0797 -6.1683 24 1 -1.3257 8.2006 -4.5349 25 1 -0.3633 0.4455 0.9261 26 1 -0.3633 0.5793 -0.8488 27 1 -0.3634 -1.0247 -0.0772 28 1 1.4115 -1.5741 1.4685 29 1 1.9169 -0.0058 2.1210 30 1 3.9405 -1.0311 2.1649 31 1 3.9910 -0.4865 0.4692 32 1 4.4802 -3.0132 0.9904 33 1 2.7270 -3.1445 1.2215 34 1 4.1182 -2.1465 -1.2268 35 1 3.4273 -3.7628 -0.9985 36 1 1.1943 -2.4825 -0.4702 37 1 1.7205 -2.6117 -2.1675 38 1 1.4023 -1.9526 -3.6275 39 1 1.0986 -0.4331 -4.5033 40 1 2.6999 -0.7454 -3.7917 41 1 0.9859 1.6589 -1.5637 42 1 2.1887 1.5415 -2.8705 43 1 0.3664 1.2023 -4.5174 44 1 -0.8365 1.3198 -3.2108 45 1 -0.0619 3.6197 -2.7034 46 1 1.1411 3.5030 -4.0100 47 1 -0.6818 3.1638 -5.6570 48 1 -1.8843 3.2806 -4.3499 49 1 -3.2257 5.4686 -6.9908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709173087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:06 Heat of formation + Delta-G solvation = -29.994697 kcal Electronic energy + Delta-G solvation = -21428.154683 eV Core-core repulsion = 18581.816525 eV Total energy + Delta-G solvation = -2846.338158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10768 -36.89234 -34.36009 -33.64447 -32.38709 -30.95148 -28.85733 -27.19784 -26.52684 -24.52335 -23.28686 -22.63196 -21.03682 -20.50975 -19.93815 -18.45820 -16.60668 -16.14703 -15.79306 -15.14386 -14.86468 -14.48969 -14.28808 -13.97899 -13.78855 -13.71794 -13.26217 -12.52167 -12.46014 -12.26455 -12.16811 -11.99176 -11.74078 -11.65570 -11.54285 -11.26639 -11.08134 -10.92672 -10.84806 -10.58050 -10.51617 -10.43586 -10.39314 -10.28431 -10.21870 -10.02120 -9.55107 -9.20926 -8.96178 -8.29845 -8.11854 -5.94965 -3.97000 3.34465 3.40463 3.44113 3.95772 4.40370 4.49512 4.52368 4.77007 4.86796 5.03890 5.07628 5.13781 5.21720 5.28045 5.35820 5.40485 5.47479 5.57005 5.58622 5.67078 5.72304 5.74103 5.80069 5.85182 5.90694 5.92775 5.97295 6.00189 6.04615 6.09124 6.13374 6.21964 6.24445 6.26056 6.32901 6.42779 6.56457 6.63600 6.87903 7.04187 7.16881 7.25996 7.35057 7.74630 7.91117 8.06602 8.49549 9.10629 9.66689 11.16386 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037090 B = 0.003179 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.749351 B = 8804.361555 C = 9136.480651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.117 4.117 9 C 0.094 3.906 10 H 0.033 0.967 11 N -0.536 5.536 12 C 0.018 3.982 13 C 0.049 3.951 14 C -0.113 4.113 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.020 0.980 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.684 -16.565 13.988 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.014 4.014 10 H 0.051 0.949 11 N -0.260 5.260 12 C -0.130 4.130 13 C -0.078 4.078 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.034 0.966 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.059 -16.694 13.951 24.405 hybrid contribution 0.832 1.335 -0.380 1.618 sum 11.890 -15.359 13.571 23.695 Atomic orbital electron populations 1.21833 0.94159 1.02249 1.01568 1.21561 0.97070 0.98768 0.92900 0.91796 1.21386 0.95945 1.00512 0.97054 1.21358 0.97115 0.96238 1.00983 1.20487 1.01465 0.96783 0.96647 1.20475 0.97598 1.00949 0.96529 1.21555 0.96858 0.94700 1.02353 1.21444 0.94165 0.94868 0.90898 0.94941 1.62143 1.52977 1.07611 1.03299 1.22501 0.97994 0.99887 0.92627 1.22353 0.98217 0.86485 1.00766 1.21684 0.98301 0.97512 0.97605 1.21595 1.00428 0.92280 1.00426 1.19080 0.93317 0.95663 0.93449 1.21299 1.18647 0.92443 1.23374 0.92810 1.25033 0.95560 0.98127 0.95821 1.69973 1.21795 1.35206 1.26616 0.86620 0.77198 0.85981 0.78358 1.20730 1.21237 1.19899 0.93967 0.90667 0.92865 0.91915 0.92362 0.92192 0.91795 0.92689 0.92187 0.92491 0.92419 0.91171 0.90689 0.91457 0.90666 0.96118 0.90369 0.95569 0.92621 0.91774 0.93549 0.93813 0.96812 0.96627 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.24 37.16 0.31 -1.32 16 2 C -0.08 -0.90 1.84 -89.51 -0.16 -1.06 16 3 H 0.06 0.74 7.07 -51.93 -0.37 0.37 16 4 C -0.11 -0.99 4.68 -27.43 -0.13 -1.12 16 5 C -0.12 -0.97 5.60 -27.34 -0.15 -1.13 16 6 C -0.12 -0.89 5.27 -29.60 -0.16 -1.04 16 7 C -0.12 -0.97 5.25 -29.59 -0.16 -1.12 16 8 C -0.12 -1.12 5.03 -27.34 -0.14 -1.26 16 9 C 0.09 1.04 1.15 -68.42 -0.08 0.96 16 10 H 0.03 0.38 6.63 -51.93 -0.34 0.04 16 11 N -0.54 -6.90 3.63 -235.74 -0.85 -7.76 16 12 C 0.02 0.21 8.97 60.07 0.54 0.75 16 13 C 0.05 0.72 3.85 -3.83 -0.01 0.70 16 14 C -0.11 -1.98 5.17 -26.73 -0.14 -2.12 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 1.02 5.65 -51.93 -0.29 0.73 16 27 H 0.05 0.61 7.33 -51.93 -0.38 0.22 16 28 H 0.06 0.55 6.47 -51.93 -0.34 0.21 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.57 6.99 -51.93 -0.36 0.21 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 34 H 0.06 0.50 7.47 -51.93 -0.39 0.11 16 35 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.07 0.69 6.19 -51.93 -0.32 0.37 16 37 H 0.07 0.74 5.33 -51.93 -0.28 0.46 16 38 H 0.07 0.72 6.11 -51.93 -0.32 0.40 16 39 H 0.07 0.98 6.02 -51.93 -0.31 0.67 16 40 H 0.02 0.24 8.09 -51.93 -0.42 -0.18 16 41 H 0.08 1.13 5.02 -51.93 -0.26 0.87 16 42 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.06 0.98 6.33 -51.93 -0.33 0.65 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -29.79 351.25 -10.10 -39.89 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -9.29 Total: -4.03 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -0.97 Total: -23.64 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.12 Total: -34.54 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.79 -10.10 -39.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709173087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.894 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds