Wall clock time and date at job start Mon Mar 30 2020 07:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 108.78189 * 2 1 4 4 C 1.54068 * 108.81265 * 118.40683 * 2 1 3 5 5 C 1.50477 * 112.49252 * 162.46456 * 4 2 1 6 6 C 1.54237 * 108.52508 * 265.84792 * 5 4 2 7 7 C 1.45538 * 112.32643 * 80.04011 * 6 5 4 8 8 C 1.54251 * 112.40051 * 297.91679 * 7 6 5 9 9 C 1.50479 * 108.43938 * 80.12658 * 8 7 6 10 10 H 1.09000 * 108.87206 * 26.60616 * 9 8 7 11 11 N 1.46899 * 108.87794 * 145.05299 * 9 8 7 12 12 C 1.46904 * 110.99732 * 303.00331 * 11 9 8 13 13 C 1.46892 * 110.99997 * 179.04891 * 11 9 8 14 14 C 1.53005 * 109.47353 * 190.00037 * 13 11 9 15 15 C 1.52997 * 109.47072 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46750 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47010 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00079 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99834 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00185 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99951 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47283 * 89.99357 * 21 19 17 23 23 H 1.48499 * 109.47007 * 209.99440 * 21 19 17 24 24 H 1.48501 * 109.46864 * 329.99533 * 21 19 17 25 25 H 1.08998 * 109.47169 * 295.69087 * 1 2 3 26 26 H 1.09003 * 109.47071 * 55.68609 * 1 2 3 27 27 H 1.08999 * 109.47399 * 175.69036 * 1 2 3 28 28 H 1.09002 * 108.87619 * 41.68916 * 4 2 1 29 29 H 1.08996 * 108.87826 * 283.24240 * 4 2 1 30 30 H 1.09004 * 109.62051 * 146.13937 * 5 4 2 31 31 H 1.08995 * 109.78671 * 25.65653 * 5 4 2 32 32 H 1.08991 * 108.89777 * 200.74735 * 6 5 4 33 33 H 1.08997 * 108.89309 * 319.33625 * 6 5 4 34 34 H 1.09001 * 108.90136 * 58.77090 * 7 6 5 35 35 H 1.09008 * 108.89339 * 177.26632 * 7 6 5 36 36 H 1.08998 * 109.68602 * 320.43496 * 8 7 6 37 37 H 1.09001 * 109.81349 * 199.89409 * 8 7 6 38 38 H 1.08999 * 109.47256 * 68.46555 * 12 11 9 39 39 H 1.09002 * 109.46786 * 188.46366 * 12 11 9 40 40 H 1.08993 * 109.47141 * 308.46064 * 12 11 9 41 41 H 1.09004 * 109.47129 * 310.00158 * 13 11 9 42 42 H 1.09000 * 109.47516 * 69.99904 * 13 11 9 43 43 H 1.08996 * 109.46807 * 300.00018 * 14 13 11 44 44 H 1.09000 * 109.46918 * 59.99500 * 14 13 11 45 45 H 1.08996 * 109.47356 * 299.99728 * 15 14 13 46 46 H 1.09000 * 109.47619 * 59.99975 * 15 14 13 47 47 H 1.09004 * 109.47306 * 299.99479 * 16 15 14 48 48 H 1.08994 * 109.47501 * 59.99870 * 16 15 14 49 49 H 0.97003 * 119.99729 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8809 1.0319 0.0000 4 6 2.0268 -0.6938 1.2828 5 6 3.4673 -1.1181 1.1868 6 6 3.5155 -2.5863 0.7167 7 6 3.3353 -2.7124 -0.7219 8 6 1.9601 -2.1934 -1.1899 9 6 2.0246 -0.6930 -1.2840 10 1 3.0565 -0.3954 -1.4703 11 7 1.1942 -0.2514 -2.4125 12 6 1.6267 -0.8866 -3.6645 13 6 1.2058 1.2124 -2.5335 14 6 0.1465 1.6488 -3.5477 15 6 0.1582 3.1736 -3.6732 16 6 -0.9015 3.6099 -4.6870 17 6 -0.8896 5.1118 -4.8111 18 1 -0.1960 5.6966 -4.2252 19 6 -1.7650 5.7392 -5.6719 20 7 -2.6100 5.0271 -6.3850 21 14 -1.7508 7.6009 -5.8252 22 1 -0.8015 8.0023 -6.8943 23 1 -3.1140 8.0797 -6.1683 24 1 -1.3257 8.2006 -4.5349 25 1 -0.3633 0.4455 0.9261 26 1 -0.3633 0.5793 -0.8488 27 1 -0.3634 -1.0247 -0.0772 28 1 1.4115 -1.5741 1.4685 29 1 1.9169 -0.0058 2.1210 30 1 3.9405 -1.0311 2.1649 31 1 3.9910 -0.4865 0.4692 32 1 4.4802 -3.0132 0.9904 33 1 2.7270 -3.1445 1.2215 34 1 4.1182 -2.1465 -1.2268 35 1 3.4273 -3.7628 -0.9985 36 1 1.1943 -2.4825 -0.4702 37 1 1.7205 -2.6117 -2.1675 38 1 1.4023 -1.9526 -3.6275 39 1 1.0986 -0.4331 -4.5033 40 1 2.6999 -0.7454 -3.7917 41 1 0.9859 1.6589 -1.5637 42 1 2.1887 1.5415 -2.8705 43 1 0.3664 1.2023 -4.5174 44 1 -0.8365 1.3198 -3.2108 45 1 -0.0619 3.6197 -2.7034 46 1 1.1411 3.5030 -4.0100 47 1 -0.6818 3.1638 -5.6570 48 1 -1.8843 3.2806 -4.3499 49 1 -3.2257 5.4686 -6.9908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709173087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:06 Heat of formation + Delta-G solvation = -44.749859 kcal Electronic energy + Delta-G solvation = -21428.794515 eV Core-core repulsion = 18581.816525 eV Total energy + Delta-G solvation = -2846.977990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97379 -37.92160 -36.10079 -34.45855 -34.23743 -32.03323 -30.30821 -28.30044 -27.65856 -26.07869 -24.20280 -23.78486 -22.36367 -21.67813 -21.19928 -19.33950 -18.43427 -17.48576 -16.78049 -16.54154 -16.13454 -15.91009 -15.25591 -15.01941 -14.79588 -14.63490 -14.37460 -14.05695 -13.76626 -13.59109 -13.34312 -13.16042 -12.89101 -12.85426 -12.80346 -12.50669 -12.46188 -12.26763 -12.23157 -12.01398 -11.76533 -11.52015 -11.37267 -11.30215 -11.25184 -11.11091 -11.08972 -10.91231 -10.85845 -10.55677 -9.15757 -8.20076 -6.31685 1.38925 1.40783 1.52034 2.40577 2.95202 3.12487 3.68371 3.74159 4.00733 4.10570 4.13219 4.19282 4.29042 4.32731 4.41034 4.46336 4.49709 4.53591 4.58845 4.60871 4.70224 4.80859 4.84982 4.90432 4.92503 4.95986 4.99629 5.08102 5.14797 5.20639 5.25062 5.27213 5.27861 5.33229 5.35661 5.36784 5.40988 5.48400 5.54133 5.57233 5.59214 5.68342 5.77603 5.86679 6.19695 6.24773 6.29469 6.85735 7.37612 8.91853 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037090 B = 0.003179 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.749351 B = 8804.361555 C = 9136.480651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.054 0.946 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.114 4.114 9 C 0.098 3.902 10 H 0.028 0.972 11 N -0.543 5.543 12 C 0.018 3.982 13 C 0.062 3.938 14 C -0.101 4.101 15 C -0.096 4.096 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.263 1.263 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.047 0.953 47 H -0.012 1.012 48 H -0.011 1.011 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 -16.733 15.272 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.151 4.151 9 C -0.010 4.010 10 H 0.046 0.954 11 N -0.267 5.267 12 C -0.130 4.130 13 C -0.066 4.066 14 C -0.139 4.139 15 C -0.134 4.134 16 C -0.012 4.012 17 C -0.583 4.583 18 H 0.077 0.923 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.187 1.187 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.006 0.994 48 H 0.007 0.993 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.309 -16.874 15.246 25.859 hybrid contribution 0.418 1.347 -0.796 1.619 sum 12.727 -15.527 14.450 24.736 Atomic orbital electron populations 1.21769 0.94846 1.01897 1.00863 1.21561 0.96375 0.98513 0.93743 0.92781 1.21345 0.96545 1.00554 0.95955 1.21355 0.96393 0.96459 1.01403 1.20480 1.02232 0.96430 0.96150 1.20440 0.96329 1.01397 0.96929 1.21528 0.97872 0.93399 1.02321 1.21500 0.93422 0.95911 0.90175 0.95389 1.62125 1.53928 1.06312 1.04304 1.22516 0.98047 1.00661 0.91750 1.22105 0.96781 0.87977 0.99718 1.21498 0.99018 0.94899 0.98515 1.21398 0.98513 0.94780 0.98751 1.18995 0.93698 0.94875 0.93611 1.21743 1.19040 0.93737 1.23775 0.92259 1.26023 0.94931 1.03835 0.95227 1.70110 1.22517 1.37606 1.27245 0.85434 0.77540 0.79090 0.78909 1.19704 1.20619 1.18679 0.93343 0.92920 0.92735 0.91506 0.91947 0.91089 0.92688 0.91639 0.91756 0.92974 0.91356 0.91182 0.90910 0.89817 0.92058 0.95642 0.90078 0.95680 0.92953 0.92693 0.93159 0.93444 0.99358 0.99253 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.24 71.98 0.59 -2.47 16 2 C -0.08 -1.68 1.84 -10.07 -0.02 -1.70 16 3 H 0.05 1.20 7.07 -2.39 -0.02 1.18 16 4 C -0.11 -1.69 4.68 30.14 0.14 -1.55 16 5 C -0.12 -1.68 5.60 30.20 0.17 -1.51 16 6 C -0.12 -1.47 5.27 28.73 0.15 -1.32 16 7 C -0.11 -1.61 5.25 28.74 0.15 -1.46 16 8 C -0.11 -1.98 5.03 30.20 0.15 -1.83 16 9 C 0.10 2.04 1.15 44.46 0.05 2.09 16 10 H 0.03 0.63 6.63 -2.39 -0.02 0.61 16 11 N -0.54 -13.64 3.63 -899.76 -3.26 -16.90 16 12 C 0.02 0.42 8.97 127.69 1.15 1.57 16 13 C 0.06 1.79 3.85 86.31 0.33 2.12 16 14 C -0.10 -3.61 5.17 30.60 0.16 -3.46 16 15 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 16 C 0.03 1.39 4.97 29.85 0.15 1.54 16 17 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 20 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 21 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.42 5.65 -2.39 -0.01 1.41 16 27 H 0.05 1.19 7.33 -2.39 -0.02 1.17 16 28 H 0.07 1.03 6.47 -2.39 -0.02 1.01 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.05 0.89 6.99 -2.39 -0.02 0.87 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.79 7.47 -2.39 -0.02 0.77 16 34 H 0.05 0.81 7.47 -2.39 -0.02 0.79 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 1.24 6.19 -2.39 -0.01 1.22 16 37 H 0.07 1.31 5.33 -2.39 -0.01 1.29 16 38 H 0.08 1.67 6.11 -2.39 -0.01 1.66 16 39 H 0.06 1.60 6.02 -2.39 -0.01 1.58 16 40 H 0.03 0.56 8.09 -2.39 -0.02 0.55 16 41 H 0.08 2.31 5.02 -2.38 -0.01 2.30 16 42 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.05 1.89 6.33 -2.39 -0.02 1.87 16 44 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 47 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 48 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -63.99 351.25 3.96 -60.04 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.88 Total: 11.29 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 4.03 Total: -43.52 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -2.98 Total: -75.03 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -63.99 3.96 -60.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709173087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.287 kcal (2) G-P(sol) polarization free energy of solvation -63.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds