Wall clock time and date at job start Mon Mar 30 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47135 * 2 1 4 4 C 1.53003 * 109.47101 * 119.99966 * 2 1 3 5 5 C 1.52997 * 109.47073 * 60.00053 * 4 2 1 6 6 C 1.52994 * 109.47123 * 299.99641 * 4 2 1 7 7 C 1.53003 * 109.46886 * 179.97438 * 4 2 1 8 8 N 1.46905 * 109.47188 * 189.31339 * 7 4 2 9 9 C 1.46851 * 110.99664 * 82.67061 * 8 7 4 10 10 C 1.53037 * 109.51137 * 174.15948 * 9 8 7 11 11 C 1.53120 * 109.28074 * 59.18309 * 10 9 8 12 12 C 1.53000 * 109.52155 * 182.37716 * 11 10 9 13 13 C 1.50699 * 109.46800 * 185.00580 * 12 11 10 14 14 H 1.07999 * 120.00303 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99955 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00181 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99917 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47491 * 90.00122 * 17 15 13 19 19 H 1.48504 * 109.47329 * 210.00406 * 17 15 13 20 20 H 1.48500 * 109.46987 * 330.00085 * 17 15 13 21 21 C 1.53117 * 109.16262 * 302.34540 * 11 10 9 22 22 C 1.46850 * 110.99136 * 318.47156 * 8 7 4 23 23 H 1.09001 * 109.46809 * 299.99927 * 1 2 3 24 24 H 1.08994 * 109.47090 * 59.99911 * 1 2 3 25 25 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47263 * 239.99792 * 2 1 3 27 27 H 1.08991 * 109.47325 * 60.00349 * 3 2 1 28 28 H 1.09002 * 109.46941 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47064 * 299.99526 * 3 2 1 30 30 H 1.09003 * 109.46688 * 186.63175 * 5 4 2 31 31 H 1.08992 * 109.47107 * 306.63186 * 5 4 2 32 32 H 1.08999 * 109.47041 * 66.63546 * 5 4 2 33 33 H 1.09002 * 109.47704 * 263.29614 * 6 4 2 34 34 H 1.08997 * 109.47168 * 23.29409 * 6 4 2 35 35 H 1.09007 * 109.46974 * 143.29420 * 6 4 2 36 36 H 1.09009 * 109.47232 * 69.31995 * 7 4 2 37 37 H 1.09001 * 109.47435 * 309.31640 * 7 4 2 38 38 H 1.08997 * 109.45909 * 54.14835 * 9 8 7 39 39 H 1.09003 * 109.46095 * 294.16741 * 9 8 7 40 40 H 1.08997 * 109.49909 * 179.13141 * 10 9 8 41 41 H 1.09004 * 109.50165 * 299.24221 * 10 9 8 42 42 H 1.09008 * 109.51859 * 62.25188 * 11 10 9 43 43 H 1.09002 * 109.47333 * 305.00070 * 12 11 10 44 44 H 1.08992 * 109.47432 * 65.00177 * 12 11 10 45 45 H 0.97000 * 119.99868 * 179.97438 * 16 15 13 46 46 H 1.09002 * 109.50349 * 177.58902 * 21 11 10 47 47 H 1.08994 * 109.50320 * 297.71589 * 21 11 10 48 48 H 1.09002 * 109.46783 * 65.82447 * 22 8 7 49 49 H 1.09003 * 109.45368 * 305.85655 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 1.5301 0.0000 2.4985 7 6 3.5700 -0.7218 1.2489 8 7 4.0597 -1.5993 2.3205 9 6 4.0696 -3.0027 1.8881 10 6 4.7189 -3.8667 2.9716 11 6 3.9296 -3.7204 4.2755 12 6 4.6082 -4.5356 5.3781 13 6 3.7656 -4.4909 6.6267 14 1 2.8389 -3.9362 6.6333 15 6 4.1781 -5.1572 7.7611 16 7 3.4430 -5.1178 8.8509 17 14 5.7813 -6.1160 7.7500 18 1 6.8935 -5.2258 8.1693 19 1 5.6806 -7.2597 8.6919 20 1 6.0442 -6.6249 6.3799 21 6 3.8931 -2.2435 4.6779 22 6 3.2677 -1.4265 3.5450 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.7932 -2.6421 2.1927 31 1 0.4466 -2.1660 1.1306 32 1 1.9871 -2.7107 0.4246 33 1 2.2989 0.6806 2.8644 34 1 0.6322 0.5660 2.2502 35 1 1.2958 -0.7326 3.2708 36 1 3.9338 0.2923 1.4151 37 1 3.9331 -1.0850 0.2875 38 1 4.6376 -3.0934 0.9623 39 1 3.0461 -3.3383 1.7208 40 1 4.7122 -4.9104 2.6571 41 1 5.7468 -3.5403 3.1298 42 1 2.9122 -4.0831 4.1280 43 1 4.7178 -5.5694 5.0506 44 1 5.5915 -4.1149 5.5881 45 1 3.7331 -5.5869 9.6488 46 1 3.2963 -2.1275 5.5826 47 1 4.9079 -1.8916 4.8629 48 1 2.2481 -1.7697 3.3696 49 1 3.2534 -0.3725 3.8224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713342724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:19 Heat of formation + Delta-G solvation = 9.047701 kcal Electronic energy + Delta-G solvation = -22367.558674 eV Core-core repulsion = 19522.913521 eV Total energy + Delta-G solvation = -2844.645153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67064 -37.35559 -34.38386 -32.30438 -31.12302 -30.34539 -29.11446 -27.86505 -26.94861 -25.82110 -23.22760 -22.29105 -21.89427 -20.32412 -18.97675 -18.34007 -16.66555 -15.92133 -15.27862 -15.26245 -14.77025 -14.35588 -14.15594 -13.69192 -13.51491 -13.34026 -13.03626 -12.65536 -12.61149 -12.21725 -12.04763 -11.97045 -11.85249 -11.70160 -11.54252 -11.24204 -11.11108 -11.06242 -10.82967 -10.70334 -10.45161 -10.40999 -10.36838 -10.14164 -10.01467 -9.68280 -9.48341 -9.12130 -8.93313 -8.47559 -7.70873 -5.98685 -3.95112 3.34964 3.42087 3.46662 4.22510 4.50767 4.59695 4.63962 4.70164 5.01081 5.19404 5.20047 5.35225 5.36863 5.42692 5.45112 5.48549 5.52495 5.56564 5.61548 5.71542 5.75072 5.76310 5.81533 5.87887 5.89948 5.94665 5.99880 6.05420 6.06515 6.10669 6.17845 6.24071 6.29713 6.39364 6.42442 6.52122 6.59252 6.66852 6.93901 7.03195 7.12538 7.36332 7.42981 7.50697 7.58180 7.87594 8.61039 9.06726 9.65059 11.14802 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.004224 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.553898 B = 6627.107498 C = 6896.241585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.164 4.164 6 C -0.162 4.162 7 C 0.064 3.936 8 N -0.531 5.531 9 C 0.033 3.967 10 C -0.115 4.115 11 C -0.071 4.071 12 C -0.009 4.009 13 C -0.512 4.512 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.907 5.907 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.266 1.266 21 C -0.105 4.105 22 C 0.031 3.969 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.013 0.987 44 H 0.011 0.989 45 H 0.261 0.739 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 10.482 -18.756 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.090 4.090 5 C -0.220 4.220 6 C -0.218 4.218 7 C -0.064 4.064 8 N -0.254 5.254 9 C -0.095 4.095 10 C -0.153 4.153 11 C -0.090 4.090 12 C -0.046 4.046 13 C -0.550 4.550 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.546 5.546 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.191 1.191 21 C -0.143 4.143 22 C -0.096 4.096 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.029 0.971 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.740 10.543 -18.456 21.431 hybrid contribution 0.072 -0.771 -0.063 0.777 sum -2.667 9.772 -18.519 21.108 Atomic orbital electron populations 1.22000 0.95592 1.01865 1.01513 1.21094 0.95556 0.96025 0.97406 1.21898 1.01205 0.96023 1.01496 1.21208 0.97000 0.95392 0.95389 1.22588 1.01034 0.95728 1.02672 1.22752 1.00893 1.00842 0.97311 1.22396 0.91347 0.97934 0.94720 1.62181 1.53083 1.06081 1.04017 1.22675 1.00642 0.88382 0.97762 1.21726 1.00169 0.97929 0.95468 1.21022 0.98585 0.95476 0.93881 1.19612 0.96013 0.94710 0.94313 1.21164 1.07888 1.31528 0.94425 0.90989 1.25028 0.96833 0.96208 0.95516 1.69919 1.38456 1.43954 1.02284 0.86806 0.84545 0.79987 0.78107 1.20391 1.21574 1.19077 1.21625 1.01242 0.94582 0.96867 1.23172 0.95955 1.00251 0.90223 0.92192 0.93187 0.92436 0.91650 0.92444 0.92436 0.93225 0.90273 0.92551 0.92686 0.92100 0.92916 0.90814 0.90955 0.91772 0.92208 0.92572 0.92472 0.92000 0.92639 0.96899 0.97090 0.92901 0.90691 0.92319 0.92331 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.60 37.16 0.32 -0.96 16 2 C -0.08 -0.72 2.24 -90.62 -0.20 -0.92 16 3 C -0.15 -1.22 8.60 37.16 0.32 -0.90 16 4 C -0.09 -0.90 0.32 -154.51 -0.05 -0.95 16 5 C -0.16 -1.81 6.26 37.16 0.23 -1.58 16 6 C -0.16 -1.72 6.14 37.15 0.23 -1.49 16 7 C 0.06 0.73 4.27 -3.82 -0.02 0.71 16 8 N -0.53 -7.41 4.86 -234.65 -1.14 -8.56 16 9 C 0.03 0.46 4.78 -3.83 -0.02 0.44 16 10 C -0.12 -1.93 5.38 -26.65 -0.14 -2.07 16 11 C -0.07 -1.41 2.20 -90.50 -0.20 -1.61 16 12 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 13 C -0.51 -14.52 9.00 -34.44 -0.31 -14.83 16 14 H 0.07 2.18 7.32 -52.49 -0.38 1.79 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.91 -28.15 13.96 55.43 0.77 -27.37 16 17 Si 0.88 22.12 27.47 -169.99 -4.67 17.46 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 20 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 21 C -0.11 -1.97 5.15 -26.65 -0.14 -2.11 16 22 C 0.03 0.45 3.44 -3.83 -0.01 0.44 16 23 H 0.06 0.51 6.02 -51.93 -0.31 0.20 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.49 6.29 -51.93 -0.33 0.17 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.48 7.00 -51.93 -0.36 0.12 16 28 H 0.06 0.47 6.65 -51.93 -0.35 0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.03 3.77 -51.93 -0.20 0.83 16 31 H 0.06 0.58 6.10 -51.93 -0.32 0.27 16 32 H 0.05 0.59 7.29 -51.93 -0.38 0.21 16 33 H 0.06 0.66 6.14 -51.93 -0.32 0.34 16 34 H 0.05 0.51 5.23 -51.93 -0.27 0.24 16 35 H 0.07 0.88 5.16 -51.92 -0.27 0.61 16 36 H 0.07 0.81 6.71 -51.92 -0.35 0.46 16 37 H 0.06 0.70 7.72 -51.93 -0.40 0.30 16 38 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 39 H 0.06 0.77 3.77 -51.93 -0.20 0.57 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.07 1.55 7.06 -51.93 -0.37 1.18 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.06 0.85 2.77 -51.93 -0.14 0.71 16 49 H 0.07 1.01 5.97 -51.93 -0.31 0.70 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -29.56 331.38 -8.78 -38.33 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.55 Total: -0.52 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -0.19 Total: -24.33 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.37 Total: -35.93 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.56 -8.78 -38.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713342724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.382 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds