Wall clock time and date at job start Mon Mar 30 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47135 * 2 1 4 4 C 1.53003 * 109.47101 * 119.99966 * 2 1 3 5 5 C 1.52997 * 109.47073 * 60.00053 * 4 2 1 6 6 C 1.52994 * 109.47123 * 299.99641 * 4 2 1 7 7 C 1.53003 * 109.46886 * 179.97438 * 4 2 1 8 8 N 1.46905 * 109.47188 * 189.31339 * 7 4 2 9 9 C 1.46851 * 110.99664 * 82.67061 * 8 7 4 10 10 C 1.53037 * 109.51137 * 174.15948 * 9 8 7 11 11 C 1.53120 * 109.28074 * 59.18309 * 10 9 8 12 12 C 1.53000 * 109.52155 * 182.37716 * 11 10 9 13 13 C 1.50699 * 109.46800 * 185.00580 * 12 11 10 14 14 H 1.07999 * 120.00303 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99955 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00181 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99917 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47491 * 90.00122 * 17 15 13 19 19 H 1.48504 * 109.47329 * 210.00406 * 17 15 13 20 20 H 1.48500 * 109.46987 * 330.00085 * 17 15 13 21 21 C 1.53117 * 109.16262 * 302.34540 * 11 10 9 22 22 C 1.46850 * 110.99136 * 318.47156 * 8 7 4 23 23 H 1.09001 * 109.46809 * 299.99927 * 1 2 3 24 24 H 1.08994 * 109.47090 * 59.99911 * 1 2 3 25 25 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47263 * 239.99792 * 2 1 3 27 27 H 1.08991 * 109.47325 * 60.00349 * 3 2 1 28 28 H 1.09002 * 109.46941 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47064 * 299.99526 * 3 2 1 30 30 H 1.09003 * 109.46688 * 186.63175 * 5 4 2 31 31 H 1.08992 * 109.47107 * 306.63186 * 5 4 2 32 32 H 1.08999 * 109.47041 * 66.63546 * 5 4 2 33 33 H 1.09002 * 109.47704 * 263.29614 * 6 4 2 34 34 H 1.08997 * 109.47168 * 23.29409 * 6 4 2 35 35 H 1.09007 * 109.46974 * 143.29420 * 6 4 2 36 36 H 1.09009 * 109.47232 * 69.31995 * 7 4 2 37 37 H 1.09001 * 109.47435 * 309.31640 * 7 4 2 38 38 H 1.08997 * 109.45909 * 54.14835 * 9 8 7 39 39 H 1.09003 * 109.46095 * 294.16741 * 9 8 7 40 40 H 1.08997 * 109.49909 * 179.13141 * 10 9 8 41 41 H 1.09004 * 109.50165 * 299.24221 * 10 9 8 42 42 H 1.09008 * 109.51859 * 62.25188 * 11 10 9 43 43 H 1.09002 * 109.47333 * 305.00070 * 12 11 10 44 44 H 1.08992 * 109.47432 * 65.00177 * 12 11 10 45 45 H 0.97000 * 119.99868 * 179.97438 * 16 15 13 46 46 H 1.09002 * 109.50349 * 177.58902 * 21 11 10 47 47 H 1.08994 * 109.50320 * 297.71589 * 21 11 10 48 48 H 1.09002 * 109.46783 * 65.82447 * 22 8 7 49 49 H 1.09003 * 109.45368 * 305.85655 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 1.5301 0.0000 2.4985 7 6 3.5700 -0.7218 1.2489 8 7 4.0597 -1.5993 2.3205 9 6 4.0696 -3.0027 1.8881 10 6 4.7189 -3.8667 2.9716 11 6 3.9296 -3.7204 4.2755 12 6 4.6082 -4.5356 5.3781 13 6 3.7656 -4.4909 6.6267 14 1 2.8389 -3.9362 6.6333 15 6 4.1781 -5.1572 7.7611 16 7 3.4430 -5.1178 8.8509 17 14 5.7813 -6.1160 7.7500 18 1 6.8935 -5.2258 8.1693 19 1 5.6806 -7.2597 8.6919 20 1 6.0442 -6.6249 6.3799 21 6 3.8931 -2.2435 4.6779 22 6 3.2677 -1.4265 3.5450 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.7932 -2.6421 2.1927 31 1 0.4466 -2.1660 1.1306 32 1 1.9871 -2.7107 0.4246 33 1 2.2989 0.6806 2.8644 34 1 0.6322 0.5660 2.2502 35 1 1.2958 -0.7326 3.2708 36 1 3.9338 0.2923 1.4151 37 1 3.9331 -1.0850 0.2875 38 1 4.6376 -3.0934 0.9623 39 1 3.0461 -3.3383 1.7208 40 1 4.7122 -4.9104 2.6571 41 1 5.7468 -3.5403 3.1298 42 1 2.9122 -4.0831 4.1280 43 1 4.7178 -5.5694 5.0506 44 1 5.5915 -4.1149 5.5881 45 1 3.7331 -5.5869 9.6488 46 1 3.2963 -2.1275 5.5826 47 1 4.9079 -1.8916 4.8629 48 1 2.2481 -1.7697 3.3696 49 1 3.2534 -0.3725 3.8224 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713342724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:18 Heat of formation + Delta-G solvation = -8.036376 kcal Electronic energy + Delta-G solvation = -22368.299495 eV Core-core repulsion = 19522.913521 eV Total energy + Delta-G solvation = -2845.385974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68616 -38.52992 -35.85053 -34.24762 -32.28996 -31.45359 -30.55837 -28.84691 -27.97077 -26.97080 -24.78215 -23.57143 -22.84226 -21.86675 -20.42654 -19.15033 -18.85463 -16.87573 -16.42267 -16.35469 -16.28992 -15.66948 -15.24932 -15.02039 -14.77267 -14.48406 -14.38973 -14.08002 -13.82679 -13.50705 -13.35353 -13.10008 -12.89837 -12.81119 -12.63182 -12.53925 -12.37004 -12.21745 -12.02393 -11.92988 -11.73255 -11.66064 -11.53432 -11.43990 -11.28441 -11.15267 -11.01682 -10.78958 -10.72148 -10.64845 -8.78768 -8.26453 -6.28201 1.35105 1.36131 1.48419 2.37318 3.08570 3.15766 3.79287 3.82709 3.87243 4.08721 4.11913 4.15215 4.28881 4.38530 4.45526 4.48826 4.61620 4.66193 4.70904 4.74894 4.77731 4.80023 4.87092 4.88533 4.96160 5.00492 5.04020 5.06192 5.10460 5.11394 5.13783 5.17333 5.25283 5.27447 5.29333 5.34754 5.40073 5.45429 5.48637 5.54175 5.61382 5.68365 5.73491 5.79171 6.30513 6.34941 6.40490 6.78744 7.35499 8.90248 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.004224 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.553898 B = 6627.107498 C = 6896.241585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.162 4.162 6 C -0.160 4.160 7 C 0.066 3.934 8 N -0.540 5.540 9 C 0.037 3.963 10 C -0.109 4.109 11 C -0.068 4.068 12 C -0.006 4.006 13 C -0.517 4.517 14 H 0.035 0.965 15 C 0.003 3.997 16 N -0.953 5.953 17 Si 0.946 3.054 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.249 1.249 21 C -0.102 4.102 22 C 0.044 3.956 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.264 0.736 46 H 0.041 0.959 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 10.796 -21.461 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.084 4.084 5 C -0.218 4.218 6 C -0.217 4.217 7 C -0.061 4.061 8 N -0.263 5.263 9 C -0.090 4.090 10 C -0.147 4.147 11 C -0.086 4.086 12 C -0.044 4.044 13 C -0.555 4.555 14 H 0.053 0.947 15 C -0.193 4.193 16 N -0.595 5.595 17 Si 0.770 3.230 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.173 1.173 21 C -0.140 4.140 22 C -0.083 4.083 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.714 10.868 -21.186 23.872 hybrid contribution -0.338 -0.817 0.803 1.194 sum -2.053 10.051 -20.383 22.819 Atomic orbital electron populations 1.21990 0.95291 1.01775 1.01843 1.21055 0.95758 0.96258 0.96549 1.21885 1.01252 0.95538 1.01805 1.21134 0.96272 0.95050 0.95909 1.22537 1.01543 0.96088 1.01639 1.22704 1.01363 1.00469 0.97120 1.22446 0.91983 0.97540 0.94156 1.62132 1.53286 1.06515 1.04368 1.22658 1.01111 0.87937 0.97332 1.21647 0.99399 0.99282 0.94360 1.20932 0.98050 0.95227 0.94426 1.19577 0.95458 0.95529 0.93795 1.21464 1.07135 1.30485 0.96440 0.94711 1.25972 1.00813 0.97527 0.95036 1.70070 1.40741 1.45458 1.03192 0.85715 0.79727 0.78546 0.79001 1.19484 1.21017 1.17261 1.21517 1.00273 0.94848 0.97322 1.23021 0.95923 0.99779 0.89593 0.92544 0.92195 0.92741 0.91121 0.92812 0.92341 0.92296 0.92474 0.92043 0.91941 0.92280 0.91917 0.92556 0.90474 0.90504 0.90055 0.91892 0.91594 0.92449 0.93778 0.96772 0.97094 0.92703 0.93994 0.93356 0.91791 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.60 71.98 0.62 -1.57 16 2 C -0.08 -1.14 2.24 -10.79 -0.02 -1.17 16 3 C -0.15 -2.01 8.60 71.98 0.62 -1.39 16 4 C -0.08 -1.49 0.32 -52.18 -0.02 -1.51 16 5 C -0.16 -3.27 6.26 71.98 0.45 -2.82 16 6 C -0.16 -3.21 6.14 71.98 0.44 -2.76 16 7 C 0.07 1.33 4.27 86.30 0.37 1.70 16 8 N -0.54 -14.06 4.86 -896.30 -4.35 -18.41 16 9 C 0.04 0.95 4.78 86.32 0.41 1.36 16 10 C -0.11 -3.48 5.38 30.65 0.16 -3.32 16 11 C -0.07 -2.70 2.20 -10.71 -0.02 -2.73 16 12 C -0.01 -0.30 3.52 29.85 0.11 -0.20 16 13 C -0.52 -30.36 9.00 25.60 0.23 -30.13 16 14 H 0.03 2.23 7.32 -2.91 -0.02 2.21 16 15 C 0.00 0.16 5.47 84.65 0.46 0.62 16 16 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 17 Si 0.95 45.71 27.47 68.60 1.88 47.60 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 21 C -0.10 -3.91 5.15 30.65 0.16 -3.75 16 22 C 0.04 1.29 3.44 86.32 0.30 1.58 16 23 H 0.06 0.85 6.02 -2.39 -0.01 0.84 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.82 6.29 -2.39 -0.02 0.80 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.77 7.00 -2.39 -0.02 0.76 16 28 H 0.06 0.79 6.65 -2.39 -0.02 0.77 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 1.43 3.77 -2.39 -0.01 1.42 16 31 H 0.06 1.17 6.10 -2.39 -0.01 1.16 16 32 H 0.06 1.17 7.29 -2.39 -0.02 1.15 16 33 H 0.06 1.20 6.14 -2.39 -0.01 1.18 16 34 H 0.06 1.13 5.23 -2.39 -0.01 1.11 16 35 H 0.06 1.33 5.16 -2.38 -0.01 1.32 16 36 H 0.08 1.51 6.71 -2.38 -0.02 1.49 16 37 H 0.08 1.38 7.72 -2.39 -0.02 1.37 16 38 H 0.08 1.80 7.92 -2.39 -0.02 1.79 16 39 H 0.06 1.58 3.77 -2.39 -0.01 1.57 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 44 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 45 H 0.26 15.80 8.31 -92.71 -0.77 15.02 16 46 H 0.04 1.85 7.06 -2.39 -0.02 1.83 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.06 1.86 2.77 -2.39 -0.01 1.86 16 49 H 0.08 2.21 5.97 -2.39 -0.01 2.20 16 Total: -1.00 -64.78 331.38 2.95 -61.82 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.86 Total: 15.74 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 4.27 Total: -46.08 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -4.06 Total: -79.09 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.60 kcal Total: -64.78 2.95 -61.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713342724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.785 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds